Coverage Report
Test checkImportPAEForStructure
| Test | ||||
|---|---|---|---|---|
| checkImportPAEForStructure | 3FAIL | 19 Jun 11:36:45 | 1.134 |
no contact map found for AF-0000000203848083-model_v1|B expected [1] but found [0]
java.lang.AssertionError: no contact map found for AF-0000000203848083-model_v1|B expected [1] but found [0] at org.testng.Assert.fail(Assert.java:94) at org.testng.Assert.failNotEquals(Assert.java:496) at org.testng.Assert.assertEquals(Assert.java:125) at org.testng.Assert.assertEquals(Assert.java:372) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:141) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:90) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:61) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:133) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:71) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
| checkImportPAEForStructure | ||||
|---|---|---|---|---|
| com.stevesoft.pat.patInf com.stevesoft.pat.patInf | 1.0100% |
|
||
| jalview.io.DataSourceType jalview.io.DataSourceType | 1.0100% |
|
||
| jalview.renderer.ContactMapRenderer.Shading jalview.renderer.ContactMapRenderer.Shading | 1.0100% |
|
||
| jalview.renderer.ScaleRenderer.ScaleMark jalview.renderer.ScaleRenderer.ScaleMark | 1.0100% |
|
||
| jalview.ws.WSClient jalview.ws.WSClient | 1.0100% |
|
||
| jalview.datamodel.annotations.AlphaFoldAnnotationRowBuilder jalview.datamodel.annotations.AlphaFoldAnnotationRowBuilder | 1.0100% |
|
||
| jalview.datamodel.ResidueCount.SymbolCounts jalview.datamodel.ResidueCount.SymbolCounts | 1.0100% |
|
||
| jalview.jbgui.GAlignmentPanel jalview.jbgui.GAlignmentPanel | 0.9494% |
|
||
| jalview.analysis.Conservation jalview.analysis.Conservation | 0.8719806787.2% |
|
||
| jalview.datamodel.Profiles jalview.datamodel.Profiles | 0.866666786.7% |
|
||
| com.stevesoft.pat.Rthings com.stevesoft.pat.Rthings | 0.8461538684.6% |
|
||
| mc_view.Residue mc_view.Residue | 0.8461538684.6% |
|
||
| jalview.datamodel.ContactListImpl jalview.datamodel.ContactListImpl | 0.830508583.1% |
|
||
| jalview.datamodel.ContactMapHolder jalview.datamodel.ContactMapHolder | 0.826923182.7% |
|
||
| jalview.util.LinkedIdentityHashSet jalview.util.LinkedIdentityHashSet | 0.7727272577.3% |
|
||
| jalview.ws.utils.UrlDownloadClient jalview.ws.utils.UrlDownloadClient | 0.771428677.1% |
|
||
| jalview.schemes.ZappoColourScheme jalview.schemes.ZappoColourScheme | 0.7575% |
|
||
| jalview.datamodel.Profile jalview.datamodel.Profile | 0.7377049373.8% |
|
||
| jalview.gui.FeatureRenderer jalview.gui.FeatureRenderer | 0.7142857371.4% |
|
||
| jalview.util.LinkedIdentityHashSet.IdentityWrapper jalview.util.LinkedIdentityHashSet.IdentityWrapper | 0.7142857371.4% |
|
||
| jalview.workers.SecondaryStructureConsensusThread jalview.workers.SecondaryStructureConsensusThread | 0.7073170570.7% |
|
||
| jalview.workers.ConsensusThread jalview.workers.ConsensusThread | 0.702970370.3% |
|
||
| jalview.ws.SequenceFetcher jalview.ws.SequenceFetcher | 0.678571467.9% |
|
||
| jalview.renderer.ContactMapRenderer jalview.renderer.ContactMapRenderer | 0.663265366.3% |
|
||
| com.stevesoft.pat.oneChar com.stevesoft.pat.oneChar | 0.6285714562.9% |
|
||
| com.stevesoft.pat.OrMark com.stevesoft.pat.OrMark | 0.62562.5% |
|
||
| jalview.renderer.AnnotationRendererFactory jalview.renderer.AnnotationRendererFactory | 0.62562.5% |
|
||
| jalview.util.MapUtils jalview.util.MapUtils | 0.608695660.9% |
|
||
| com.stevesoft.pat.SubMark com.stevesoft.pat.SubMark | 0.660% |
|
||
| jalview.util.ParseHtmlBodyAndLinks jalview.util.ParseHtmlBodyAndLinks | 0.594202959.4% |
|
||
| jalview.jbgui.GAlignFrame jalview.jbgui.GAlignFrame | 0.571820757.2% |
|
||
| jalview.schemes.FeatureSettingsAdapter jalview.schemes.FeatureSettingsAdapter | 0.571428657.1% |
|
||
| jalview.workers.ConservationThread jalview.workers.ConservationThread | 0.568965556.9% |
|
||
| jalview.util.CaseInsensitiveString jalview.util.CaseInsensitiveString | 0.565217456.5% |
|
||
| jalview.ext.jmol.JmolParser jalview.ext.jmol.JmolParser | 0.56103956.1% |
|
||
| jalview.renderer.ScaleRenderer jalview.renderer.ScaleRenderer | 0.5656% |
|
||
| jalview.workers.AlignCalcManager jalview.workers.AlignCalcManager | 0.559523856% |
|
||
| jalview.datamodel.ContactRange jalview.datamodel.ContactRange | 0.555555655.6% |
|
||
| com.stevesoft.pat.StrPos com.stevesoft.pat.StrPos | 0.523255852.3% |
|
||
| com.stevesoft.pat.Multi_stage2 com.stevesoft.pat.Multi_stage2 | 0.5111111451.1% |
|
||
| mc_view.PDBChain mc_view.PDBChain | 0.502645550.3% |
|
||
| com.stevesoft.pat.Multi com.stevesoft.pat.Multi | 0.550% |
|
||
| com.stevesoft.pat.Bracket com.stevesoft.pat.Bracket | 0.550% |
|
||
| jalview.viewmodel.ViewportProperties jalview.viewmodel.ViewportProperties | 0.550% |
|
||
| mc_view.Bond mc_view.Bond | 0.550% |
|
||
| com.stevesoft.pat.wrap.StringWrap com.stevesoft.pat.wrap.StringWrap | 0.550% |
|
||
| jalview.datamodel.GroupSetHolder jalview.datamodel.GroupSetHolder | 0.550% |
|
||
| jalview.schemes.TaylorColourScheme jalview.schemes.TaylorColourScheme | 0.550% |
|
||
| jalview.schemes.FlowerColourScheme jalview.schemes.FlowerColourScheme | 0.550% |
|
||
| jalview.schemes.NucleotideAmbiguityColourScheme jalview.schemes.NucleotideAmbiguityColourScheme | 0.550% |
|
||
| jalview.schemes.PurinePyrimidineColourScheme jalview.schemes.PurinePyrimidineColourScheme | 0.550% |
|
||
| jalview.schemes.NucleotideColourScheme jalview.schemes.NucleotideColourScheme | 0.550% |
|
||
| jalview.schemes.BlossomColourScheme jalview.schemes.BlossomColourScheme | 0.550% |
|
||
| jalview.schemes.SunsetColourScheme jalview.schemes.SunsetColourScheme | 0.550% |
|
||
| jalview.schemes.OceanColourScheme jalview.schemes.OceanColourScheme | 0.550% |
|
||
| jalview.structure.StructureImportSettings jalview.structure.StructureImportSettings | 0.485714348.6% |
|
||
| com.stevesoft.pat.Range com.stevesoft.pat.Range | 0.4772727247.7% |
|
||
| jalview.io.StructureFile jalview.io.StructureFile | 0.474418647.4% |
|
||
| jalview.io.FileLoader jalview.io.FileLoader | 0.4466666644.7% |
|
||
| jalview.ws.jws2.MsaWSClient jalview.ws.jws2.MsaWSClient | 0.4429530244.3% |
|
||
| com.stevesoft.pat.Pattern com.stevesoft.pat.Pattern | 0.437543.8% |
|
||
| com.stevesoft.pat.FastMulti com.stevesoft.pat.FastMulti | 0.435185243.5% |
|
||
| jalview.gui.ColourMenuHelper jalview.gui.ColourMenuHelper | 0.4322033843.2% |
|
||
| jalview.analysis.AlignSeq jalview.analysis.AlignSeq | 0.4311224543.1% |
|
||
| jalview.datamodel.HiddenCursorPosition jalview.datamodel.HiddenCursorPosition | 0.4285714342.9% |
|
||
| jalview.schemes.ResidueColourScheme jalview.schemes.ResidueColourScheme | 0.4285714342.9% |
|
||
| jalview.datamodel.FloatContactMatrix jalview.datamodel.FloatContactMatrix | 0.4242% |
|
||
| jalview.util.ShortcutKeyMaskExWrapper11 jalview.util.ShortcutKeyMaskExWrapper11 | 0.4166666641.7% |
|
||
| org.json.simple.parser.Yylex org.json.simple.parser.Yylex | 0.4108280241.1% |
|
||
| jalview.datamodel.annotations.AnnotationRowBuilder jalview.datamodel.annotations.AnnotationRowBuilder | 0.4102564241% |
|
||
| jalview.gui.SequenceRenderer jalview.gui.SequenceRenderer | 0.4086538640.9% |
|
||
| jalview.io.FileFormats jalview.io.FileFormats | 0.440% |
|
||
| jalview.ws.dbsources.EmblSource jalview.ws.dbsources.EmblSource | 0.440% |
|
||
| jalview.schemes.HydrophobicColourScheme jalview.schemes.HydrophobicColourScheme | 0.440% |
|
||
| jalview.schemes.HelixColourScheme jalview.schemes.HelixColourScheme | 0.440% |
|
||
| jalview.schemes.TurnColourScheme jalview.schemes.TurnColourScheme | 0.440% |
|
||
| jalview.schemes.StrandColourScheme jalview.schemes.StrandColourScheme | 0.440% |
|
||
| jalview.schemes.BuriedColourScheme jalview.schemes.BuriedColourScheme | 0.440% |
|
||
| jalview.ws.datamodel.alphafold.MappableContactMatrix jalview.ws.datamodel.alphafold.MappableContactMatrix | 0.3933054539.3% |
|
||
| jalview.analysis.AAFrequency jalview.analysis.AAFrequency | 0.3898635539% |
|
||
| jalview.log.JalviewAppender jalview.log.JalviewAppender | 0.388888938.9% |
|
||
| jalview.renderer.AnnotationRenderer jalview.renderer.AnnotationRenderer | 0.3866071438.7% |
|
||
| jalview.gui.AlignViewport jalview.gui.AlignViewport | 0.3767123237.7% |
|
||
| jalview.renderer.ContactGeometry jalview.renderer.ContactGeometry | 0.37537.5% |
|
||
| jalview.datamodel.PDBEntry jalview.datamodel.PDBEntry | 0.3736654837.4% |
|
||
| jalview.util.Format jalview.util.Format | 0.3685300436.9% |
|
||
| jalview.renderer.ContactGeometry.contactInterval jalview.renderer.ContactGeometry.contactInterval | 0.3571428735.7% |
|
||
| jalview.util.MessageManager jalview.util.MessageManager | 0.3571428735.7% |
|
||
| jalview.datamodel.ResidueCount jalview.datamodel.ResidueCount | 0.3563636235.6% |
|
||
| jalview.datamodel.SequenceFeature jalview.datamodel.SequenceFeature | 0.35251835.3% |
|
||
| com.stevesoft.pat.patInt com.stevesoft.pat.patInt | 0.3535% |
|
||
| jalview.io.AlignFile jalview.io.AlignFile | 0.3493150834.9% |
|
||
| jalview.datamodel.Sequence jalview.datamodel.Sequence | 0.346483734.6% |
|
||
| jalview.viewmodel.styles.ViewStyle jalview.viewmodel.styles.ViewStyle | 0.3369565333.7% |
|
||
| jalview.datamodel.AlignmentAnnotation jalview.datamodel.AlignmentAnnotation | 0.3285024232.9% |
|
||
| jalview.ws.datamodel.alphafold.PAEContactMatrix jalview.ws.datamodel.alphafold.PAEContactMatrix | 0.3274336232.7% |
|
||
| jalview.datamodel.features.SequenceFeatures jalview.datamodel.features.SequenceFeatures | 0.3248407532.5% |
|
||
| jalview.io.IdentifyFile jalview.io.IdentifyFile | 0.3234421332.3% |
|
||
| jalview.util.Comparison jalview.util.Comparison | 0.3228346432.3% |
|
||
| jalview.viewmodel.ViewportRanges jalview.viewmodel.ViewportRanges | 0.3201320232% |
|
||
| jalview.ws.rest.RestServiceDescription jalview.ws.rest.RestServiceDescription | 0.31531.5% |
|
||
| org.json.simple.parser.JSONParser org.json.simple.parser.JSONParser | 0.3143564531.4% |
|
||
| jalview.gui.AlignmentPanel jalview.gui.AlignmentPanel | 0.307058830.7% |
|
||
| com.stevesoft.pat.Or com.stevesoft.pat.Or | 0.294871829.5% |
|
||
| com.stevesoft.pat.Regex com.stevesoft.pat.Regex | 0.2927272629.3% |
|
||
| jalview.ws.jws2.SequenceAnnotationWSClient jalview.ws.jws2.SequenceAnnotationWSClient | 0.2903225729% |
|
||
| jalview.ws.dbsources.EmblCdsSource jalview.ws.dbsources.EmblCdsSource | 0.285714328.6% |
|
||
| jalview.renderer.ResidueColourFinder jalview.renderer.ResidueColourFinder | 0.285714328.6% |
|
||
| jalview.datamodel.Annotation jalview.datamodel.Annotation | 0.285714328.6% |
|
||
| jalview.schemes.JalviewColourScheme jalview.schemes.JalviewColourScheme | 0.285714328.6% |
|
||
| jalview.viewmodel.AlignmentViewport jalview.viewmodel.AlignmentViewport | 0.2846207328.5% |
|
||
| jalview.ws.dbsources.EBIAlfaFold jalview.ws.dbsources.EBIAlfaFold | 0.283076928.3% |
|
||
| mc_view.Atom mc_view.Atom | 0.282051328.2% |
|
||
| jalview.gui.IdCanvas jalview.gui.IdCanvas | 0.273684227.4% |
|
||
| jalview.ws.jws2.JabaPreset jalview.ws.jws2.JabaPreset | 0.2727272827.3% |
|
||
| jalview.gui.JvSwingUtils jalview.gui.JvSwingUtils | 0.258503425.9% |
|
||
| jalview.structure.StructureSelectionManager jalview.structure.StructureSelectionManager | 0.2576312725.8% |
|
||
| jalview.datamodel.features.FeatureStore jalview.datamodel.features.FeatureStore | 0.2567975825.7% |
|
||
| jalview.ws.jws2.jabaws2.Jws2Instance jalview.ws.jws2.jabaws2.Jws2Instance | 0.2528735725.3% |
|
||
| jalview.gui.JalviewChangeSupport jalview.gui.JalviewChangeSupport | 0.2525% |
|
||
| jalview.gui.IdwidthAdjuster jalview.gui.IdwidthAdjuster | 0.2525% |
|
||
| jalview.ws.uimodel.AlignAnalysisUIText jalview.ws.uimodel.AlignAnalysisUIText | 0.2439024424.4% |
|
||
| jalview.ws.rest.params.Alignment jalview.ws.rest.params.Alignment | 0.2435897424.4% |
|
||
| jalview.util.Platform jalview.util.Platform | 0.2392156923.9% |
|
||
| jalview.ws.jws2.Jws2Discoverer jalview.ws.jws2.Jws2Discoverer | 0.2336633723.4% |
|
||
| jalview.datamodel.SequenceCursor jalview.datamodel.SequenceCursor | 0.2333333323.3% |
|
||
| jalview.datamodel.SecondaryStructureCount jalview.datamodel.SecondaryStructureCount | 0.2304687523% |
|
||
| jalview.datamodel.features.FeatureAttributes jalview.datamodel.features.FeatureAttributes | 0.224806222.5% |
|
||
| jalview.ws.jws2.Jws2Client jalview.ws.jws2.Jws2Client | 0.2228915722.3% |
|
||
| jalview.viewmodel.seqfeatures.FeaturesDisplayed jalview.viewmodel.seqfeatures.FeaturesDisplayed | 0.2187521.9% |
|
||
| jalview.analysis.AlignmentAnnotationUtils jalview.analysis.AlignmentAnnotationUtils | 0.2169811321.7% |
|
||
| jalview.gui.ScalePanel jalview.gui.ScalePanel | 0.2148437521.5% |
|
||
| jalview.io.PDBFeatureSettings jalview.io.PDBFeatureSettings | 0.2142857221.4% |
|
||
| jalview.gui.AnnotationLabels jalview.gui.AnnotationLabels | 0.214057521.4% |
|
||
| jalview.viewmodel.seqfeatures.FeatureRendererModel jalview.viewmodel.seqfeatures.FeatureRendererModel | 0.2128325621.3% |
|
||
| jalview.datamodel.features.FeatureAttributes.AttributeData jalview.datamodel.features.FeatureAttributes.AttributeData | 0.2127659621.3% |
|
||
| jalview.analysis.scoremodels.ScoreModels jalview.analysis.scoremodels.ScoreModels | 0.2115384621.2% |
|
||
| jalview.ws.rest.InputType jalview.ws.rest.InputType | 0.2056074720.6% |
|
||
| jalview.io.FileParse jalview.io.FileParse | 0.1743119217.4% |
|
||
| jalview.schemes.IdColourScheme jalview.schemes.IdColourScheme | 0.1739130517.4% |
|
||
| jalview.util.MapList jalview.util.MapList | 0.1738461617.4% |
|
||
| com.stevesoft.pat.RegOpt com.stevesoft.pat.RegOpt | 0.1726618717.3% |
|
||
| jalview.datamodel.Alignment jalview.datamodel.Alignment | 0.1681985316.8% |
|
||
| jalview.analysis.AnnotationSorter jalview.analysis.AnnotationSorter | 0.1679687516.8% |
|
||
| jalview.io.AppletFormatAdapter jalview.io.AppletFormatAdapter | 0.1677018716.8% |
|
||
| jalview.log.JLogger jalview.log.JLogger | 0.1648351716.5% |
|
||
| jalview.ws.jws1.WS1Client jalview.ws.jws1.WS1Client | 0.1616% |
|
||
| jalview.gui.PaintRefresher jalview.gui.PaintRefresher | 0.1549295815.5% |
|
||
| jalview.schemes.TCoffeeColourScheme jalview.schemes.TCoffeeColourScheme | 0.1475409914.8% |
|
||
| jalview.gui.Desktop.MyDesktopPane jalview.gui.Desktop.MyDesktopPane | 0.1428571514.3% |
|
||
| jalview.util.HttpUtils jalview.util.HttpUtils | 0.1345029213.5% |
|
||
| jalview.datamodel.GroupSet jalview.datamodel.GroupSet | 0.1293103412.9% |
|
||
| jalview.ws.rest.params.SeqGroupIndexVector jalview.ws.rest.params.SeqGroupIndexVector | 0.12408759412.4% |
|
||
| jalview.io.FormatAdapter jalview.io.FormatAdapter | 0.1212% |
|
||
| jalview.util.ColorUtils jalview.util.ColorUtils | 0.1197771612% |
|
||
| jalview.schemes.Blosum62ColourScheme jalview.schemes.Blosum62ColourScheme | 0.1176470611.8% |
|
||
| jalview.gui.AlignFrame jalview.gui.AlignFrame | 0.114382411.4% |
|
||
| jalview.gui.AnnotationPanel jalview.gui.AnnotationPanel | 0.1113445411.1% |
|
||
| jalview.gui.Desktop.MyDesktopManager jalview.gui.Desktop.MyDesktopManager | 0.1111111111.1% |
|
||
| jalview.util.ShortcutKeyMaskExWrapper jalview.util.ShortcutKeyMaskExWrapper | 0.1111111111.1% |
|
||
| jalview.ws.sifts.SiftsSettings jalview.ws.sifts.SiftsSettings | 0.1111111111.1% |
|
||
| jalview.schemes.ColourSchemeProperty jalview.schemes.ColourSchemeProperty | 0.1111111111.1% |
|
||
| jalview.ws.rest.RestClient jalview.ws.rest.RestClient | 0.1111111111.1% |
|
||
| jalview.log.JLoggerLog4j jalview.log.JLoggerLog4j | 0.10679611610.7% |
|
||
| jalview.util.QuickSort jalview.util.QuickSort | 0.10679611610.7% |
|
||
| jalview.analysis.scoremodels.ScoreMatrix jalview.analysis.scoremodels.ScoreMatrix | 0.1028806610.3% |
|
||
| jalview.datamodel.DBRefEntry jalview.datamodel.DBRefEntry | 0.1027397310.3% |
|
||
| jalview.ws.rest.params.AnnotationFile jalview.ws.rest.params.AnnotationFile | 0.10256410410.3% |
|
||
| com.stevesoft.pat.parsePerl com.stevesoft.pat.parsePerl | 0.098639469.9% |
|
||
| jalview.gui.SeqCanvas jalview.gui.SeqCanvas | 0.097804399.8% |
|
||
| jalview.datamodel.ContactMatrixI jalview.datamodel.ContactMatrixI | 0.0970873769.7% |
|
||
| org.json.simple.parser.Yytoken org.json.simple.parser.Yytoken | 0.096774199.7% |
|
||
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|
||
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|
||
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|
||
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|
||
| jalview.util.DBRefUtils jalview.util.DBRefUtils | 0.08734948.7% |
|
||
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|
||
| jalview.renderer.ResidueShader jalview.renderer.ResidueShader | 0.0853658548.5% |
|
||
| jalview.ext.ensembl.EnsemblSequenceFetcher jalview.ext.ensembl.EnsemblSequenceFetcher | 0.0833333368.3% |
|
||
| jalview.gui.Console jalview.gui.Console | 0.082568818.3% |
|
||
| jalview.schemes.RNAHelicesColour jalview.schemes.RNAHelicesColour | 0.082191788.2% |
|
||
| jalview.gui.ProgressBar jalview.gui.ProgressBar | 0.081300818.1% |
|
||
| jalview.ws.seqfetcher.DbSourceProxyImpl jalview.ws.seqfetcher.DbSourceProxyImpl | 0.081081088.1% |
|
||
| jalview.schemes.FeatureColour jalview.schemes.FeatureColour | 0.077894747.8% |
|
||
| jalview.datamodel.ColumnSelection.IntList jalview.datamodel.ColumnSelection.IntList | 0.074766357.5% |
|
||
| jalview.schemes.ColourSchemes jalview.schemes.ColourSchemes | 0.070175447% |
|
||
| jalview.gui.Desktop jalview.gui.Desktop | 0.067613646.8% |
|
||
| jalview.gui.IdPanel jalview.gui.IdPanel | 0.067264576.7% |
|
||
| jalview.schemes.PIDColourScheme jalview.schemes.PIDColourScheme | 0.066666676.7% |
|
||
| jalview.analysis.AlignmentUtils jalview.analysis.AlignmentUtils | 0.063618296.4% |
|
||
| jalview.analysis.CrossRef jalview.analysis.CrossRef | 0.063524596.4% |
|
||
| ext.vamsas.ServiceHandle ext.vamsas.ServiceHandle | 0.061224496.1% |
|
||
| jalview.gui.ViewSelectionMenu jalview.gui.ViewSelectionMenu | 0.059405945.9% |
|
||
| jalview.ws.seqfetcher.ASequenceFetcher jalview.ws.seqfetcher.ASequenceFetcher | 0.0577777775.8% |
|
||
| jalview.ws.jws1.Discoverer jalview.ws.jws1.Discoverer | 0.0512820525.1% |
|
||
| jalview.analysis.GeneticCodes jalview.analysis.GeneticCodes | 0.0496894425% |
|
||
| jalview.bin.Cache jalview.bin.Cache | 0.0482093654.8% |
|
||
| jalview.structure.StructureMapping jalview.structure.StructureMapping | 0.0466321264.7% |
|
||
| jalview.datamodel.ColumnSelection jalview.datamodel.ColumnSelection | 0.044673544.5% |
|
||
| jalview.ws.dbsources.Pdb jalview.ws.dbsources.Pdb | 0.042553194.3% |
|
||
| jalview.ws.jws2.JabaParamStore jalview.ws.jws2.JabaParamStore | 0.0416666684.2% |
|
||
| org.json.simple.JSONObject org.json.simple.JSONObject | 0.037735853.8% |
|
||
| jalview.datamodel.HiddenColumns jalview.datamodel.HiddenColumns | 0.037735853.8% |
|
||
| jalview.ws.jws1.JPredClient jalview.ws.jws1.JPredClient | 0.0310559013.1% |
|
||
| com.stevesoft.pat.RegRes com.stevesoft.pat.RegRes | 0.0289855082.9% |
|
||
| jalview.datamodel.HiddenSequences jalview.datamodel.HiddenSequences | 0.027397262.7% |
|
||
| jalview.util.MappingUtils jalview.util.MappingUtils | 0.0237068962.4% |
|
||
| jalview.datamodel.Mapping jalview.datamodel.Mapping | 0.0216450232.2% |
|
||
| jalview.schemes.ClustalxColourScheme jalview.schemes.ClustalxColourScheme | 0.0169491531.7% |
|
||
| jalview.datamodel.HiddenColumnsCursor jalview.datamodel.HiddenColumnsCursor | 0.0156251.6% |
|
||
| jalview.ws.dbsources.Uniprot jalview.ws.dbsources.Uniprot | 0.0155642021.6% |
|
||
| mc_view.PDBfile mc_view.PDBfile | 0.0150375941.5% |
|
||
| jalview.controller.AlignViewController jalview.controller.AlignViewController | 0.0135593221.4% |
|
||
| jalview.datamodel.SearchResults jalview.datamodel.SearchResults | 0.0128205131.3% |
|
||
| jalview.gui.SeqPanel jalview.gui.SeqPanel | 0.0125082291.3% |
|
||
| jalview.io.SequenceAnnotationReport jalview.io.SequenceAnnotationReport | 0.0122699381.2% |
|
||
| jalview.gui.SequenceFetcher jalview.gui.SequenceFetcher | 0.0085106380.9% |
|
||
| jalview.ext.ensembl.EnsemblGene jalview.ext.ensembl.EnsemblGene | 0.0081632650.8% |
|
||
| jalview.bin.Jalview jalview.bin.Jalview | 0.0080935250.8% |
|
||
| org.json.simple.JSONArray org.json.simple.JSONArray | 0.0080645160.8% |
|
||
| jalview.renderer.seqfeatures.FeatureRenderer jalview.renderer.seqfeatures.FeatureRenderer | 0.007547170.8% |
|
||
| jalview.gui.QuitHandler jalview.gui.QuitHandler | 0.00722021660.7% |
|
||
| jalview.ext.jmol.JalviewJmolBinding jalview.ext.jmol.JalviewJmolBinding | 0.0040160640.4% |
|
||
| com.stevesoft.pat.CaseMgr com.stevesoft.pat.CaseMgr | 0.00278551530.3% |
|
||
| jalview.schemes.ResidueProperties jalview.schemes.ResidueProperties | 0.00105042020.1% |
|
||