|
jalview.ws.WSClient
jalview.ws.WSClient
|
1.0100%
|
|
|
jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
|
1.0100%
|
|
|
jalview.analysis.Conservation
jalview.analysis.Conservation
|
0.8719806787.2%
|
|
|
com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
|
0.8461538684.6%
|
|
|
jalview.datamodel.Profiles
jalview.datamodel.Profiles
|
0.7333333573.3%
|
|
|
jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
|
0.678571467.9%
|
|
|
jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
|
0.673267367.3%
|
|
|
jalview.workers.ConservationThread
jalview.workers.ConservationThread
|
0.550%
|
|
|
com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
|
0.550%
|
|
|
com.stevesoft.pat.wrap.StringWrap
com.stevesoft.pat.wrap.StringWrap
|
0.550%
|
|
|
com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
|
0.485714348.6%
|
|
|
jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
|
0.4727272747.3%
|
|
|
jalview.analysis.Finder
jalview.analysis.Finder
|
0.4436363644.4%
|
|
|
jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
|
0.440%
|
|
|
jalview.util.SparseCount
jalview.util.SparseCount
|
0.440%
|
|
|
jalview.datamodel.Profile
jalview.datamodel.Profile
|
0.344262334.4%
|
|
|
jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
|
0.31531.5%
|
|
|
jalview.datamodel.SearchResults.Match
jalview.datamodel.SearchResults.Match
|
0.2878787828.8%
|
|
|
jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
|
0.285714328.6%
|
|
|
jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
|
0.2435897424.4%
|
|
|
com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
|
0.2430555524.3%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.2380952423.8%
|
|
|
jalview.ext.android.SparseShortArray
jalview.ext.android.SparseShortArray
|
0.225988722.6%
|
|
|
jalview.log.JalviewAppender
jalview.log.JalviewAppender
|
0.2222222222.2%
|
|
|
jalview.ws.rest.InputType
jalview.ws.rest.InputType
|
0.2056074720.6%
|
|
|
jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
|
0.1929824519.3%
|
|
|
jalview.workers.AlignCalcManager
jalview.workers.AlignCalcManager
|
0.190476219%
|
|
|
com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
|
0.1845454618.5%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.1564625815.6%
|
|
|
jalview.util.Format
jalview.util.Format
|
0.1490683314.9%
|
|
|
jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.132812513.3%
|
|
|
jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
|
|
|
jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
|
0.11538461611.5%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.11428571511.4%
|
|
|
jalview.ext.android.ContainerHelpers
jalview.ext.android.ContainerHelpers
|
0.1111111111.1%
|
|
|
jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
|
0.1111111111.1%
|
|
|
jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
|
|
|
com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
|
0.098639469.9%
|
|
|
jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
|
0.09523819.5%
|
|
|
jalview.util.StringUtils
jalview.util.StringUtils
|
0.094395289.4%
|
|
|
jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
|
0.086956528.7%
|
|
|
jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.0833333368.3%
|
|
|
jalview.io.FileFormats
jalview.io.FileFormats
|
0.088%
|
|
|
com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
|
0.079710158%
|
|
|
jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
|
0.0729166647.3%
|
|
|
jalview.datamodel.SearchResults
jalview.datamodel.SearchResults
|
0.0705128247.1%
|
|
|
jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.0617283966.2%
|
|
|
jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
|
0.0577777775.8%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.055118115.5%
|
|
|
jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.0540540555.4%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.0488850774.9%
|
|
|
jalview.util.ColorUtils
jalview.util.ColorUtils
|
0.0445682444.5%
|
|
|
jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.042553194.3%
|
|
|
com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
|
0.03753.8%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.029197082.9%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.028925622.9%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.0277495782.8%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.0236604032.4%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.022977942.3%
|
|
|
jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.0217821782.2%
|
|
|
jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.0210843372.1%
|
|
|
jalview.gui.Console
jalview.gui.Console
|
0.0206422022.1%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.019536022%
|
|
|
jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
|
0.0164705891.6%
|
|
|
jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.0155642021.6%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.01275510251.3%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.0127388541.3%
|
|
|
jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.01219512151.2%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.0117924531.2%
|
|
|
jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
|
0.0114942531.1%
|
|
|
jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
|
0.0085106380.9%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.0078431380.8%
|
|
|
jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.004566210.5%
|
|
|
jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.0042016810.4%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.0034090910.3%
|
|
|
com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
|
0.00278551530.3%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.0024154590.2%
|
|
