|
jalview.ws.params.ParamDatastoreI
jalview.ws.params.ParamDatastoreI
|
1.0100%
|
|
|
jalview.io.gff.Gff2Helper
jalview.io.gff.Gff2Helper
|
1.0100%
|
|
|
jalview.datamodel.SequenceDummy
jalview.datamodel.SequenceDummy
|
1.0100%
|
|
|
jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
|
1.0100%
|
|
|
jalview.analysis.Conservation
jalview.analysis.Conservation
|
0.881642588.2%
|
|
|
jalview.datamodel.Profiles
jalview.datamodel.Profiles
|
0.866666786.7%
|
|
|
jalview.workers.ComplementConsensusThread
jalview.workers.ComplementConsensusThread
|
0.833333383.3%
|
|
|
jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
|
0.77577.5%
|
|
|
jalview.io.gff.GffHelperFactory
jalview.io.gff.GffHelperFactory
|
0.7575%
|
|
|
jalview.workers.SecondaryStructureConsensusThread
jalview.workers.SecondaryStructureConsensusThread
|
0.735849173.6%
|
|
|
jalview.analysis.CodingUtils
jalview.analysis.CodingUtils
|
0.7068965470.7%
|
|
|
jalview.datamodel.Profile
jalview.datamodel.Profile
|
0.672131167.2%
|
|
|
jalview.ws.api.UIinfo
jalview.ws.api.UIinfo
|
0.6470588464.7%
|
|
|
jalview.io.gff.ExonerateHelper
jalview.io.gff.ExonerateHelper
|
0.6190476461.9%
|
|
|
jalview.io.gff.SequenceOntologyFactory
jalview.io.gff.SequenceOntologyFactory
|
0.660%
|
|
|
jalview.workers.ConservationThread
jalview.workers.ConservationThread
|
0.595238159.5%
|
|
|
jalview.ws.jws2.PreferredServiceRegistry
jalview.ws.jws2.PreferredServiceRegistry
|
0.576719657.7%
|
|
|
jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
|
0.5061224750.6%
|
|
|
jalview.analysis.SequenceIdMatcher.SeqIdName
jalview.analysis.SequenceIdMatcher.SeqIdName
|
0.550%
|
|
|
jalview.io.gff.GffHelperBase
jalview.io.gff.GffHelperBase
|
0.4834123348.3%
|
|
|
jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
|
0.4727272747.3%
|
|
|
jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
|
0.4671052746.7%
|
|
|
jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
|
0.4579439245.8%
|
|
|
jalview.analysis.SequenceIdMatcher
jalview.analysis.SequenceIdMatcher
|
0.447368444.7%
|
|
|
jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
|
0.4355628243.6%
|
|
|
jalview.util.QuickSort.IntComparator
jalview.util.QuickSort.IntComparator
|
0.4285714342.9%
|
|
|
jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
0.4285714342.9%
|
|
|
jalview.datamodel.MappingType
jalview.datamodel.MappingType
|
0.440%
|
|
|
jalview.ws2.actions.BaseAction
jalview.ws2.actions.BaseAction
|
0.440%
|
|
|
jalview.log.JalviewAppender
jalview.log.JalviewAppender
|
0.388888938.9%
|
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|
jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
|
0.3588850235.9%
|
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|
jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
|
0.3428571534.3%
|
|
|
jalview.io.FastaFile
jalview.io.FastaFile
|
0.3423423534.2%
|
|
|
jalview.datamodel.AlignedCodonFrame
jalview.datamodel.AlignedCodonFrame
|
0.3378839533.8%
|
|
|
jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
|
0.3333333433.3%
|
|
|
jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
|
0.3221649532.2%
|
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|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.3103448231%
|
|
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jalview.ws2.api.WebService
jalview.ws2.api.WebService
|
0.330%
|
|
|
jalview.util.QuickSort
jalview.util.QuickSort
|
0.2847896528.5%
|
|
|
jalview.ext.so.SequenceOntology
jalview.ext.so.SequenceOntology
|
0.2687526.9%
|
|
|
jalview.ws.jws2.SequenceAnnotationWSClient
jalview.ws.jws2.SequenceAnnotationWSClient
|
0.2654867226.5%
|
|
|
jalview.io.AlignFile
jalview.io.AlignFile
|
0.263513526.4%
|
|
|
jalview.ws.api.ServiceWithParameters
jalview.ws.api.ServiceWithParameters
|
0.2525%
|
|
|
jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
|
0.2525%
|
|
|
jalview.ws.jws2.Jws2ClientFactory
jalview.ws.jws2.Jws2ClientFactory
|
0.24824.8%
|
|
|
jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
|
0.2435897424.4%
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|
jalview.ws.uimodel.AlignAnalysisUIText
jalview.ws.uimodel.AlignAnalysisUIText
|
0.2424%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.2380952423.8%
|
|
|
jalview.ws.WSClient
jalview.ws.WSClient
|
0.2352941223.5%
|
|
|
jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.2216066422.2%
|
|
|
jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
|
0.2183098621.8%
|
|
|
jalview.workers.AlignCalcManager2.SimpleWorkerManager
jalview.workers.AlignCalcManager2.SimpleWorkerManager
|
0.2142857221.4%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.2066945620.7%
|
|
|
jalview.ws.rest.InputType
jalview.ws.rest.InputType
|
0.2056074720.6%
|
|
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jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
|
0.2024169120.2%
|
|
|
jalview.io.gff.InterProScanHelper
jalview.io.gff.InterProScanHelper
|
0.220%
|
|
|
jalview.io.FeaturesFile
jalview.io.FeaturesFile
|
0.1973293719.7%
|
|
|
jalview.util.MapList
jalview.util.MapList
|
0.19219.2%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.1847133818.5%
|
|
|
jalview.util.StringUtils
jalview.util.StringUtils
|
0.1836158218.4%
|
|
|
jalview.workers.AlignCalcManager2.WorkerManager
jalview.workers.AlignCalcManager2.WorkerManager
|
0.1666666716.7%
|
|
|
jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
|
0.1616%
|
|
|
jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.1582733815.8%
|
|
|
jalview.util.Format
jalview.util.Format
|
0.1490683314.9%
|
|
|
jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
|
0.1466666614.7%
|
|
|
jalview.log.JLogger
jalview.log.JLogger
|
0.1428571514.3%
|
|
|
jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.132812513.3%
|
|
|
jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.11428571511.4%
|
|
|
jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
|
0.10679611610.7%
|
|
|
jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
|
|
|
jalview.bin.Console
jalview.bin.Console
|
0.09905669.9%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.0972346149.7%
|
|
|
jalview.ws2.client.jpred4.JPred4WSDiscoverer
jalview.ws2.client.jpred4.JPred4WSDiscoverer
|
0.09523819.5%
|
|
|
jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
|
0.09523819.5%
|
|
|
jalview.util.MappingUtils
jalview.util.MappingUtils
|
0.089979559%
|
|
|
jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0848484868.5%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.082677168.3%
|
|
|
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
|
0.081632658.2%
|
|
|
jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
|
0.081632658.2%
|
|
|
jalview.io.FileFormats
jalview.io.FileFormats
|
0.088%
|
|
|
jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
|
0.076923087.7%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.07652067.7%
|
|
|
jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
|
0.07547177.5%
|
|
|
jalview.workers.AlignCalcManager2
jalview.workers.AlignCalcManager2
|
0.068493156.8%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.063606566.4%
|
|
|
jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.0617283966.2%
|
|
|
ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
|
|
|
jalview.ws2.params.SimpleParamDatastore
jalview.ws2.params.SimpleParamDatastore
|
0.055%
|
|
|
jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
|
0.0468754.7%
|
|
|
jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
|
0.0454065464.5%
|
|
|
jalview.util.ColorUtils
jalview.util.ColorUtils
|
0.0441988974.4%
|
|
|
jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.0432900454.3%
|
|
|
jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
|
0.0416666684.2%
|
|
|
jalview.workers.InformationThread
jalview.workers.InformationThread
|
0.0370370373.7%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.0311653113.1%
|
|
|
jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
|
|
|
jalview.analysis.AlignmentAnnotationUtils
jalview.analysis.AlignmentAnnotationUtils
|
0.0296610173%
|
|
|
jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.0288461542.9%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.0275862072.8%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.027397262.7%
|
|
|
jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
|
0.0268456382.7%
|
|
|
jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping
jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping
|
0.0267857152.7%
|
|
|
jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.0247167872.5%
|
|
|
jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.0243902432.4%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.0228553542.3%
|
|
|
jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
|
0.021739132.2%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.0204865562%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.019801982%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.01275510251.3%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.0093786630.9%
|
|
|
jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.0092378750.9%
|
|
|
jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.008968610.9%
|
|
|
jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.0066445180.7%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.00611790870.6%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.00564971750.6%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.00235849060.2%
|
|
