|
jalview.datamodel.Profiles
jalview.datamodel.Profiles
|
0.866666786.7%
|
|
|
jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
|
0.77577.5%
|
|
|
jalview.workers.SecondaryStructureConsensusThread
jalview.workers.SecondaryStructureConsensusThread
|
0.735849173.6%
|
|
|
jalview.datamodel.Profile
jalview.datamodel.Profile
|
0.672131167.2%
|
|
|
jalview.ws.jws2.jabaws2.Jws2InstanceFactory
jalview.ws.jws2.jabaws2.Jws2InstanceFactory
|
0.565217456.5%
|
|
|
jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
|
0.550%
|
|
|
jalview.schemes.FlowerColourScheme
jalview.schemes.FlowerColourScheme
|
0.550%
|
|
|
jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
|
0.550%
|
|
|
jalview.schemes.NucleotideAmbiguityColourScheme
jalview.schemes.NucleotideAmbiguityColourScheme
|
0.550%
|
|
|
jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
|
0.550%
|
|
|
jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
|
0.550%
|
|
|
jalview.schemes.BlossomColourScheme
jalview.schemes.BlossomColourScheme
|
0.550%
|
|
|
jalview.schemes.SunsetColourScheme
jalview.schemes.SunsetColourScheme
|
0.550%
|
|
|
jalview.schemes.OceanColourScheme
jalview.schemes.OceanColourScheme
|
0.550%
|
|
|
jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
0.4285714342.9%
|
|
|
jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
|
0.440%
|
|
|
jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
|
0.440%
|
|
|
jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
|
0.440%
|
|
|
jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
|
0.440%
|
|
|
jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
|
0.440%
|
|
|
jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
|
0.3428571534.3%
|
|
|
jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
|
0.3173076831.7%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.3149606331.5%
|
|
|
jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
|
0.3095238231%
|
|
|
jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
|
0.285714328.6%
|
|
|
jalview.ws.api.UIinfo
jalview.ws.api.UIinfo
|
0.2745098227.5%
|
|
|
jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
|
0.2691680226.9%
|
|
|
jalview.workers.AlignCalcManager2.SimpleWorkerManager
jalview.workers.AlignCalcManager2.SimpleWorkerManager
|
0.2142857221.4%
|
|
|
jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
|
0.2055749120.6%
|
|
|
jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
|
0.1949152519.5%
|
|
|
jalview.workers.AlignCalcManager2.WorkerManager
jalview.workers.AlignCalcManager2.WorkerManager
|
0.1666666716.7%
|
|
|
jalview.log.JalviewAppender
jalview.log.JalviewAppender
|
0.1666666716.7%
|
|
|
jalview.log.JLogger
jalview.log.JLogger
|
0.1428571514.3%
|
|
|
jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.132812513.3%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.1190476211.9%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.11428571511.4%
|
|
|
jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
|
0.10679611610.7%
|
|
|
jalview.ws2.api.WebService
jalview.ws2.api.WebService
|
0.110%
|
|
|
jalview.bin.Console
jalview.bin.Console
|
0.089622649%
|
|
|
jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
|
0.086956528.7%
|
|
|
jalview.ws.api.ServiceWithParameters
jalview.ws.api.ServiceWithParameters
|
0.0833333368.3%
|
|
|
jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
|
0.066666676.7%
|
|
|
jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
|
0.061224496.1%
|
|
|
jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
|
0.058823535.9%
|
|
|
jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
|
0.0512820525.1%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.0504918025%
|
|
|
jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
|
0.0468754.7%
|
|
|
jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
|
0.0454065464.5%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.0451882854.5%
|
|
|
jalview.util.ColorUtils
jalview.util.ColorUtils
|
0.0441988974.4%
|
|
|
jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
|
0.0416666684.2%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.040142734%
|
|
|
jalview.schemes.HmmerColourScheme
jalview.schemes.HmmerColourScheme
|
0.038461543.8%
|
|
|
jalview.workers.InformationThread
jalview.workers.InformationThread
|
0.0370370373.7%
|
|
|
jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
|
0.0327868833.3%
|
|
|
jalview.analysis.AlignmentAnnotationUtils
jalview.analysis.AlignmentAnnotationUtils
|
0.0296610173%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.0284552852.8%
|
|
|
jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
|
0.027397262.7%
|
|
|
jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
|
0.0268456382.7%
|
|
|
jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.0243902432.4%
|
|
|
jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.0237849022.4%
|
|
|
jalview.util.Format
jalview.util.Format
|
0.0227743282.3%
|
|
|
jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
|
0.021739132.2%
|
|
|
jalview.schemes.HMMMatchScoreColourScheme
jalview.schemes.HMMMatchScoreColourScheme
|
0.0212765952.1%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.0204865562%
|
|
|
jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.019230771.9%
|
|
|
jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
|
0.0188679251.9%
|
|
|
jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
|
0.0156251.6%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0130975771.3%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.0127388541.3%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.0123762381.2%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.0093786630.9%
|
|
|
jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.0092378750.9%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.009132420.9%
|
|
|
jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.008968610.9%
|
|
|
jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0084745760.8%
|
|
|
jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.0066445180.7%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.00564971750.6%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.00389321470.4%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.00235849060.2%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.00219160920.2%
|
|
