|
jalview.io.gff.Gff2Helper
jalview.io.gff.Gff2Helper
|
1.0100%
|
|
|
jalview.datamodel.SequenceDummy
jalview.datamodel.SequenceDummy
|
1.0100%
|
|
|
jalview.datamodel.Profiles
jalview.datamodel.Profiles
|
0.866666786.7%
|
|
|
jalview.io.gff.GffHelperFactory
jalview.io.gff.GffHelperFactory
|
0.7575%
|
|
|
jalview.workers.SecondaryStructureConsensusThread
jalview.workers.SecondaryStructureConsensusThread
|
0.735849173.6%
|
|
|
jalview.io.gff.ExonerateHelper
jalview.io.gff.ExonerateHelper
|
0.6190476461.9%
|
|
|
jalview.io.gff.SequenceOntologyFactory
jalview.io.gff.SequenceOntologyFactory
|
0.660%
|
|
|
jalview.ws.params.ParamDatastoreI
jalview.ws.params.ParamDatastoreI
|
0.550%
|
|
|
jalview.analysis.SequenceIdMatcher.SeqIdName
jalview.analysis.SequenceIdMatcher.SeqIdName
|
0.550%
|
|
|
jalview.io.gff.GffHelperBase
jalview.io.gff.GffHelperBase
|
0.4834123348.3%
|
|
|
jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
|
0.4727272747.3%
|
|
|
jalview.analysis.SequenceIdMatcher
jalview.analysis.SequenceIdMatcher
|
0.447368444.7%
|
|
|
jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
0.4285714342.9%
|
|
|
jalview.datamodel.MappingType
jalview.datamodel.MappingType
|
0.440%
|
|
|
jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
|
0.3959183739.6%
|
|
|
jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
|
0.3428571534.3%
|
|
|
jalview.io.FastaFile
jalview.io.FastaFile
|
0.3423423534.2%
|
|
|
jalview.datamodel.Profile
jalview.datamodel.Profile
|
0.3278688532.8%
|
|
|
jalview.ws2.api.WebService
jalview.ws2.api.WebService
|
0.330%
|
|
|
jalview.ext.so.SequenceOntology
jalview.ext.so.SequenceOntology
|
0.2687526.9%
|
|
|
jalview.io.AlignFile
jalview.io.AlignFile
|
0.263513526.4%
|
|
|
jalview.analysis.CodingUtils
jalview.analysis.CodingUtils
|
0.2586206825.9%
|
|
|
jalview.datamodel.AlignedCodonFrame
jalview.datamodel.AlignedCodonFrame
|
0.2559726825.6%
|
|
|
jalview.ws2.actions.BaseAction
jalview.ws2.actions.BaseAction
|
0.2285714322.9%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.2216066422.2%
|
|
|
jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
|
0.2183098621.8%
|
|
|
jalview.workers.AlignCalcManager2.SimpleWorkerManager
jalview.workers.AlignCalcManager2.SimpleWorkerManager
|
0.2142857221.4%
|
|
|
jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
|
0.2024169120.2%
|
|
|
jalview.io.gff.InterProScanHelper
jalview.io.gff.InterProScanHelper
|
0.220%
|
|
|
jalview.io.FeaturesFile
jalview.io.FeaturesFile
|
0.1973293719.7%
|
|
|
jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
|
0.1957585719.6%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.1847133818.5%
|
|
|
jalview.util.MapList
jalview.util.MapList
|
0.171217.1%
|
|
|
jalview.workers.AlignCalcManager2.WorkerManager
jalview.workers.AlignCalcManager2.WorkerManager
|
0.1666666716.7%
|
|
|
jalview.log.JalviewAppender
jalview.log.JalviewAppender
|
0.1666666716.7%
|
|
|
jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.1582733815.8%
|
|
|
jalview.log.JLogger
jalview.log.JLogger
|
0.1428571514.3%
|
|
|
jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.132812513.3%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.128870312.9%
|
|
|
jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
|
0.10679611610.7%
|
|
|
jalview.bin.Console
jalview.bin.Console
|
0.09905669.9%
|
|
|
jalview.util.StringUtils
jalview.util.StringUtils
|
0.093220349.3%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.0883140048.8%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0766208257.7%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.0714285757.1%
|
|
|
jalview.util.QuickSort
jalview.util.QuickSort
|
0.0614886736.1%
|
|
|
jalview.ws2.params.SimpleParamDatastore
jalview.ws2.params.SimpleParamDatastore
|
0.055%
|
|
|
jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
|
0.0468754.7%
|
|
|
jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
|
0.0454065464.5%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.04524594.5%
|
|
|
jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
|
0.03753.8%
|
|
|
jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.0346320353.5%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.0314960633.1%
|
|
|
jalview.analysis.AlignmentAnnotationUtils
jalview.analysis.AlignmentAnnotationUtils
|
0.0296610173%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.0284552852.8%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.027397262.7%
|
|
|
jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
|
0.0268456382.7%
|
|
|
jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping
jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping
|
0.0267857152.7%
|
|
|
jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.0248190282.5%
|
|
|
jalview.util.MappingUtils
jalview.util.MappingUtils
|
0.0224948882.2%
|
|
|
jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
|
0.021739132.2%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.0204865562%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.019801982%
|
|
|
jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
|
0.0188679251.9%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.01275510251.3%
|
|
|
jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.01219512151.2%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.0093786630.9%
|
|
|
jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.0092378750.9%
|
|
|
jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.008968610.9%
|
|
|
jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.0066445180.7%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.00564971750.6%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.00281778330.3%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.00235849060.2%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.00166852060.2%
|
|
