Coverage Report
Test noDuplicatePdbMappingsMade
| Test | ||||
|---|---|---|---|---|
| noDuplicatePdbMappingsMade | 3FAIL | 14 Jan 14:36:51 | 1.58 |
Expected only two mappings for 1A70 expected [2] but found [0]
java.lang.AssertionError: Expected only two mappings for 1A70 expected [2] but found [0] at org.testng.Assert.fail(Assert.java:110) at org.testng.Assert.failNotEquals(Assert.java:1413) at org.testng.Assert.assertEqualsImpl(Assert.java:149) at org.testng.Assert.assertEquals(Assert.java:131) at org.testng.Assert.assertEquals(Assert.java:1240) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:139) at org.testng.internal.invokers.TestInvoker.invokeMethod(TestInvoker.java:677) at org.testng.internal.invokers.TestInvoker.invokeTestMethod(TestInvoker.java:221) at org.testng.internal.invokers.MethodRunner.runInSequence(MethodRunner.java:50) at org.testng.internal.invokers.TestInvoker$MethodInvocationAgent.invoke(TestInvoker.java:969) at org.testng.internal.invokers.TestInvoker.invokeTestMethods(TestInvoker.java:194) at org.testng.internal.invokers.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:148) at org.testng.internal.invokers.TestMethodWorker.run(TestMethodWorker.java:128) at java.base/java.util.ArrayList.forEach(ArrayList.java:1541) at org.testng.TestRunner.privateRun(TestRunner.java:829) at org.testng.TestRunner.run(TestRunner.java:602) at org.testng.SuiteRunner.runTest(SuiteRunner.java:437) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:431) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:391) at org.testng.SuiteRunner.run(SuiteRunner.java:330) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:95) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1256) at org.testng.TestNG.runSuitesLocally(TestNG.java:1176) at org.testng.TestNG.runSuites(TestNG.java:1099) at org.testng.TestNG.run(TestNG.java:1067) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:141) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:90) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:61) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:133) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:71) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
| noDuplicatePdbMappingsMade | ||||
|---|---|---|---|---|
| jalview.ws.params.simple.StringParameter.Builder jalview.ws.params.simple.StringParameter.Builder | 1.0100% |
|
||
| com.stevesoft.pat.patInf com.stevesoft.pat.patInf | 1.0100% |
|
||
| jalview.io.DataSourceType jalview.io.DataSourceType | 1.0100% |
|
||
| jalview.xml.binding.jalview.JalviewModel.JSeq.Pdbids jalview.xml.binding.jalview.JalviewModel.JSeq.Pdbids | 1.0100% |
|
||
| jalview.renderer.ScaleRenderer.ScaleMark jalview.renderer.ScaleRenderer.ScaleMark | 1.0100% |
|
||
| jalview.ws2.actions.alignment.AlignmentAction.Builder jalview.ws2.actions.alignment.AlignmentAction.Builder | 1.0100% |
|
||
| jalview.ws2.api.WebService.Builder jalview.ws2.api.WebService.Builder | 1.0100% |
|
||
| jalview.ws.params.ParamDatastoreI jalview.ws.params.ParamDatastoreI | 1.0100% |
|
||
| jalview.project.Jalview2XML.JvAnnotRow jalview.project.Jalview2XML.JvAnnotRow | 1.0100% |
|
||
| jalview.datamodel.HiddenCursorPosition jalview.datamodel.HiddenCursorPosition | 1.0100% |
|
||
| jalview.datamodel.SecondaryStructureCount.SymbolCounts jalview.datamodel.SecondaryStructureCount.SymbolCounts | 1.0100% |
|
||
| jalview.datamodel.ResidueCount.SymbolCounts jalview.datamodel.ResidueCount.SymbolCounts | 1.0100% |
|
||
| jalview.schemes.ZappoColourScheme jalview.schemes.ZappoColourScheme | 1.0100% |
|
||
| jalview.ws2.actions.annotation.AnnotationAction.Builder jalview.ws2.actions.annotation.AnnotationAction.Builder | 1.0100% |
|
||
| jalview.jbgui.GAlignmentPanel jalview.jbgui.GAlignmentPanel | 0.9494% |
|
||
| jalview.analysis.Conservation jalview.analysis.Conservation | 0.888888988.9% |
|
||
| jalview.datamodel.Profiles jalview.datamodel.Profiles | 0.866666786.7% |
|
||
| jalview.viewmodel.styles.ViewStyle jalview.viewmodel.styles.ViewStyle | 0.858695685.9% |
|
||
| jalview.ws.params.simple.BooleanOption.Builder jalview.ws.params.simple.BooleanOption.Builder | 0.8571428785.7% |
|
||
| jalview.util.QuickSort.IntComparator jalview.util.QuickSort.IntComparator | 0.8571428785.7% |
|
||
| com.stevesoft.pat.Rthings com.stevesoft.pat.Rthings | 0.8461538684.6% |
|
||
| jalview.workers.ConsensusThread jalview.workers.ConsensusThread | 0.837583.7% |
|
||
| jalview.ws.params.simple.Option.Builder jalview.ws.params.simple.Option.Builder | 0.880% |
|
||
| com.stevesoft.pat.SubMark com.stevesoft.pat.SubMark | 0.880% |
|
||
| jalview.ws2.api.WebService jalview.ws2.api.WebService | 0.880% |
|
||
| jalview.workers.SecondaryStructureConsensusThread jalview.workers.SecondaryStructureConsensusThread | 0.792452879.2% |
|
||
| jalview.ws2.client.slivka.SlivkaWSDiscoverer jalview.ws2.client.slivka.SlivkaWSDiscoverer | 0.785234978.5% |
|
||
| jalview.util.LinkedIdentityHashSet jalview.util.LinkedIdentityHashSet | 0.7727272577.3% |
|
||
| jalview.ws2.actions.BaseAction jalview.ws2.actions.BaseAction | 0.771428677.1% |
|
||
| jalview.datamodel.StructureViewerModel jalview.datamodel.StructureViewerModel | 0.7676% |
|
||
| jalview.workers.AlignCalcManager2.WorkerManager jalview.workers.AlignCalcManager2.WorkerManager | 0.7575% |
|
||
| jalview.schemes.ResidueColourScheme jalview.schemes.ResidueColourScheme | 0.738095273.8% |
|
||
| jalview.datamodel.Profile jalview.datamodel.Profile | 0.7377049373.8% |
|
||
| jalview.xml.binding.jalview.SequenceSet jalview.xml.binding.jalview.SequenceSet | 0.736842173.7% |
|
||
| jalview.workers.AlignCalcManager2.SimpleWorkerManager jalview.workers.AlignCalcManager2.SimpleWorkerManager | 0.7142857371.4% |
|
||
| jalview.gui.FeatureRenderer jalview.gui.FeatureRenderer | 0.7142857371.4% |
|
||
| jalview.util.LinkedIdentityHashSet.IdentityWrapper jalview.util.LinkedIdentityHashSet.IdentityWrapper | 0.7142857371.4% |
|
||
| jalview.jbgui.GStructureViewer jalview.jbgui.GStructureViewer | 0.7065217570.7% |
|
||
| jalview.ws2.client.slivka.SlivkaParamStoreFactory jalview.ws2.client.slivka.SlivkaParamStoreFactory | 0.7028985670.3% |
|
||
| jalview.workers.ConservationThread jalview.workers.ConservationThread | 0.666666766.7% |
|
||
| jalview.xml.binding.jalview.JalviewModel.FeatureSettings jalview.xml.binding.jalview.JalviewModel.FeatureSettings | 0.666666766.7% |
|
||
| jalview.ws.params.simple.DoubleParameter.Builder jalview.ws.params.simple.DoubleParameter.Builder | 0.655172465.5% |
|
||
| jalview.ws.params.simple.IntegerParameter.Builder jalview.ws.params.simple.IntegerParameter.Builder | 0.655172465.5% |
|
||
| jalview.xml.binding.jalview.JalviewModel.JSeq jalview.xml.binding.jalview.JalviewModel.JSeq | 0.6538461465.4% |
|
||
| jalview.ws.api.UIinfo jalview.ws.api.UIinfo | 0.6470588464.7% |
|
||
| jalview.ws.SequenceFetcher jalview.ws.SequenceFetcher | 0.6470588464.7% |
|
||
| com.stevesoft.pat.oneChar com.stevesoft.pat.oneChar | 0.6285714562.9% |
|
||
| com.stevesoft.pat.OrMark com.stevesoft.pat.OrMark | 0.62562.5% |
|
||
| com.stevesoft.pat.wrap.StringWrap com.stevesoft.pat.wrap.StringWrap | 0.62562.5% |
|
||
| jalview.datamodel.StructureViewerModel.StructureData jalview.datamodel.StructureViewerModel.StructureData | 0.62562.5% |
|
||
| jalview.ws2.actions.BaseAction.Builder jalview.ws2.actions.BaseAction.Builder | 0.6190476461.9% |
|
||
| com.stevesoft.pat.StrPos com.stevesoft.pat.StrPos | 0.6162790761.6% |
|
||
| jalview.xml.binding.jalview.Pdbentry jalview.xml.binding.jalview.Pdbentry | 0.611111161.1% |
|
||
| jalview.analysis.SequenceIdMatcher.SeqIdName jalview.analysis.SequenceIdMatcher.SeqIdName | 0.605263260.5% |
|
||
| jalview.ws2.actions.alignment.AlignmentAction jalview.ws2.actions.alignment.AlignmentAction | 0.660% |
|
||
| jalview.xml.binding.jalview.JalviewModel jalview.xml.binding.jalview.JalviewModel | 0.5961538659.6% |
|
||
| jalview.util.ParseHtmlBodyAndLinks jalview.util.ParseHtmlBodyAndLinks | 0.594202959.4% |
|
||
| jalview.xml.binding.jalview.Feature jalview.xml.binding.jalview.Feature | 0.588235358.8% |
|
||
| jalview.jbgui.GTreePanel jalview.jbgui.GTreePanel | 0.5789473757.9% |
|
||
| jalview.jbgui.GAlignFrame jalview.jbgui.GAlignFrame | 0.5741666657.4% |
|
||
| jalview.ws.jws2.PreferredServiceRegistry jalview.ws.jws2.PreferredServiceRegistry | 0.571428657.1% |
|
||
| jalview.datamodel.HiddenColumnsCursor jalview.datamodel.HiddenColumnsCursor | 0.562556.2% |
|
||
| jalview.renderer.ScaleRenderer jalview.renderer.ScaleRenderer | 0.5656% |
|
||
| jalview.gui.TreePanel.TreeLoader jalview.gui.TreePanel.TreeLoader | 0.553191555.3% |
|
||
| jalview.ws2.gui.WebServicesMenuManager jalview.ws2.gui.WebServicesMenuManager | 0.551020455.1% |
|
||
| jalview.util.MessageManager jalview.util.MessageManager | 0.5238095552.4% |
|
||
| jalview.gui.PaintRefresher jalview.gui.PaintRefresher | 0.519736852% |
|
||
| com.stevesoft.pat.Boundary com.stevesoft.pat.Boundary | 0.518518551.9% |
|
||
| jalview.gui.JalviewChangeSupport jalview.gui.JalviewChangeSupport | 0.550% |
|
||
| com.stevesoft.pat.Bracket com.stevesoft.pat.Bracket | 0.550% |
|
||
| jalview.viewmodel.ViewportProperties jalview.viewmodel.ViewportProperties | 0.550% |
|
||
| jalview.xml.binding.jalview.Feature.OtherData jalview.xml.binding.jalview.Feature.OtherData | 0.550% |
|
||
| jalview.xml.binding.jalview.AnnotationElement jalview.xml.binding.jalview.AnnotationElement | 0.550% |
|
||
| jalview.xml.binding.jalview.SequenceType jalview.xml.binding.jalview.SequenceType | 0.550% |
|
||
| jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Group jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Group | 0.550% |
|
||
| jalview.xml.binding.jalview.JalviewModel.JGroup jalview.xml.binding.jalview.JalviewModel.JGroup | 0.550% |
|
||
| jalview.xml.binding.jalview.JalviewModel.Viewport.HiddenColumns jalview.xml.binding.jalview.JalviewModel.Viewport.HiddenColumns | 0.550% |
|
||
| jalview.xml.binding.jalview.Annotation jalview.xml.binding.jalview.Annotation | 0.550% |
|
||
| jalview.xml.binding.jalview.Sequence.DBRef jalview.xml.binding.jalview.Sequence.DBRef | 0.550% |
|
||
| jalview.schemes.TaylorColourScheme jalview.schemes.TaylorColourScheme | 0.550% |
|
||
| jalview.schemes.FlowerColourScheme jalview.schemes.FlowerColourScheme | 0.550% |
|
||
| jalview.schemes.NucleotideAmbiguityColourScheme jalview.schemes.NucleotideAmbiguityColourScheme | 0.550% |
|
||
| jalview.schemes.PurinePyrimidineColourScheme jalview.schemes.PurinePyrimidineColourScheme | 0.550% |
|
||
| jalview.schemes.NucleotideColourScheme jalview.schemes.NucleotideColourScheme | 0.550% |
|
||
| jalview.schemes.BlossomColourScheme jalview.schemes.BlossomColourScheme | 0.550% |
|
||
| jalview.schemes.SunsetColourScheme jalview.schemes.SunsetColourScheme | 0.550% |
|
||
| jalview.schemes.OceanColourScheme jalview.schemes.OceanColourScheme | 0.550% |
|
||
| jalview.analysis.SequenceIdMatcher jalview.analysis.SequenceIdMatcher | 0.4912280749.1% |
|
||
| jalview.gui.SequenceRenderer jalview.gui.SequenceRenderer | 0.490384649% |
|
||
| jalview.datamodel.BinaryNode jalview.datamodel.BinaryNode | 0.484848548.5% |
|
||
| jalview.xml.binding.jalview.JalviewModel.Viewport jalview.xml.binding.jalview.JalviewModel.Viewport | 0.4838709548.4% |
|
||
| com.stevesoft.pat.Range com.stevesoft.pat.Range | 0.4772727247.7% |
|
||
| jalview.ws.jws2.MsaWSClient jalview.ws.jws2.MsaWSClient | 0.4671052746.7% |
|
||
| jalview.gui.ColourMenuHelper jalview.gui.ColourMenuHelper | 0.466101746.6% |
|
||
| jalview.xml.binding.jalview.JalviewModel.JSeq.Pdbids.StructureState jalview.xml.binding.jalview.JalviewModel.JSeq.Pdbids.StructureState | 0.464285746.4% |
|
||
| jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup | 0.4579439245.8% |
|
||
| com.stevesoft.pat.FastMulti com.stevesoft.pat.FastMulti | 0.453703745.4% |
|
||
| jalview.renderer.ResidueColourFinder jalview.renderer.ResidueColourFinder | 0.4523809645.2% |
|
||
| jalview.ws2.actions.annotation.AnnotationAction jalview.ws2.actions.annotation.AnnotationAction | 0.4444444544.4% |
|
||
| jalview.datamodel.ResidueCount jalview.datamodel.ResidueCount | 0.4320557443.2% |
|
||
| jalview.analysis.AAFrequency jalview.analysis.AAFrequency | 0.4306688343.1% |
|
||
| jalview.xml.binding.jalview.Sequence jalview.xml.binding.jalview.Sequence | 0.4285714342.9% |
|
||
| jalview.bin.ApplicationSingletonProvider jalview.bin.ApplicationSingletonProvider | 0.4285714342.9% |
|
||
| jalview.ws.params.simple.BooleanOption jalview.ws.params.simple.BooleanOption | 0.4242424442.4% |
|
||
| jalview.gui.IdCanvas jalview.gui.IdCanvas | 0.415282441.5% |
|
||
| org.json.JSONTokener org.json.JSONTokener | 0.4132841241.3% |
|
||
| jalview.viewmodel.AlignmentViewport jalview.viewmodel.AlignmentViewport | 0.4065573840.7% |
|
||
| jalview.ws.dbsources.EmblSource jalview.ws.dbsources.EmblSource | 0.440% |
|
||
| jalview.schemes.HydrophobicColourScheme jalview.schemes.HydrophobicColourScheme | 0.440% |
|
||
| jalview.schemes.HelixColourScheme jalview.schemes.HelixColourScheme | 0.440% |
|
||
| jalview.schemes.TurnColourScheme jalview.schemes.TurnColourScheme | 0.440% |
|
||
| jalview.schemes.StrandColourScheme jalview.schemes.StrandColourScheme | 0.440% |
|
||
| jalview.schemes.BuriedColourScheme jalview.schemes.BuriedColourScheme | 0.440% |
|
||
| jalview.util.Comparison jalview.util.Comparison | 0.3976377839.8% |
|
||
| jalview.log.JalviewAppender jalview.log.JalviewAppender | 0.388888938.9% |
|
||
| jalview.workers.AlignCalcManager2 jalview.workers.AlignCalcManager2 | 0.3835616438.4% |
|
||
| jalview.viewmodel.ViewportRanges jalview.viewmodel.ViewportRanges | 0.380794738.1% |
|
||
| jalview.renderer.AnnotationRenderer jalview.renderer.AnnotationRenderer | 0.378402137.8% |
|
||
| jalview.analysis.TreeModel jalview.analysis.TreeModel | 0.37596937.6% |
|
||
| jalview.io.NewickFile jalview.io.NewickFile | 0.3709016437.1% |
|
||
| jalview.gui.AlignmentPanel jalview.gui.AlignmentPanel | 0.3621964236.2% |
|
||
| jalview.util.Format jalview.util.Format | 0.3602484536% |
|
||
| jalview.renderer.ResidueShader jalview.renderer.ResidueShader | 0.3536585335.4% |
|
||
| jalview.util.QuickSort jalview.util.QuickSort | 0.352750835.3% |
|
||
| com.stevesoft.pat.Pattern com.stevesoft.pat.Pattern | 0.340277834% |
|
||
| jalview.ws.jws2.Jws2Client jalview.ws.jws2.Jws2Client | 0.3333333433.3% |
|
||
| jalview.xml.binding.jalview.VAMSAS jalview.xml.binding.jalview.VAMSAS | 0.3333333433.3% |
|
||
| jalview.gui.AlignViewport jalview.gui.AlignViewport | 0.3325635233.3% |
|
||
| jalview.gui.JvSwingUtils jalview.gui.JvSwingUtils | 0.3310344833.1% |
|
||
| jalview.datamodel.features.FeatureAttributes.AttributeData jalview.datamodel.features.FeatureAttributes.AttributeData | 0.327272732.7% |
|
||
| jalview.ws.rest.RestServiceDescription jalview.ws.rest.RestServiceDescription | 0.3221649532.2% |
|
||
| jalview.datamodel.PDBEntry.Type jalview.datamodel.PDBEntry.Type | 0.312531.2% |
|
||
| com.stevesoft.pat.Regex com.stevesoft.pat.Regex | 0.3072727330.7% |
|
||
| jalview.io.FileLoader jalview.io.FileLoader | 0.295731729.6% |
|
||
| com.stevesoft.pat.Or com.stevesoft.pat.Or | 0.294871829.5% |
|
||
| jalview.datamodel.HiddenSequences jalview.datamodel.HiddenSequences | 0.2876712428.8% |
|
||
| jalview.ws.dbsources.EmblCdsSource jalview.ws.dbsources.EmblCdsSource | 0.285714328.6% |
|
||
| jalview.ws.sifts.SiftsSettings jalview.ws.sifts.SiftsSettings | 0.285714328.6% |
|
||
| jalview.schemes.JalviewColourScheme jalview.schemes.JalviewColourScheme | 0.285714328.6% |
|
||
| jalview.xml.binding.jalview.JalviewModel.Tree jalview.xml.binding.jalview.JalviewModel.Tree | 0.2692307826.9% |
|
||
| jalview.ws.jws2.SequenceAnnotationWSClient jalview.ws.jws2.SequenceAnnotationWSClient | 0.2654867226.5% |
|
||
| jalview.schemes.IdColourScheme jalview.schemes.IdColourScheme | 0.2608695626.1% |
|
||
| jalview.ws.jws2.Jws2ClientFactory jalview.ws.jws2.Jws2ClientFactory | 0.25625.6% |
|
||
| jalview.ws2.client.api.AbstractWebServiceDiscoverer jalview.ws2.client.api.AbstractWebServiceDiscoverer | 0.25471725.5% |
|
||
| org.json.JSONObject.Null org.json.JSONObject.Null | 0.2525% |
|
||
| jalview.gui.IdwidthAdjuster jalview.gui.IdwidthAdjuster | 0.2525% |
|
||
| jalview.ws.api.ServiceWithParameters jalview.ws.api.ServiceWithParameters | 0.2525% |
|
||
| jalview.ws.jws2.JabaPreset jalview.ws.jws2.JabaPreset | 0.2525% |
|
||
| jalview.renderer.AnnotationRendererFactory jalview.renderer.AnnotationRendererFactory | 0.2525% |
|
||
| jalview.structures.models.SequenceStructureBindingModel jalview.structures.models.SequenceStructureBindingModel | 0.2525% |
|
||
| jalview.schemes.ColourSchemeProperty jalview.schemes.ColourSchemeProperty | 0.2525% |
|
||
| jalview.project.Jalview2XML jalview.project.Jalview2XML | 0.2467722324.7% |
|
||
| jalview.ws.rest.params.Alignment jalview.ws.rest.params.Alignment | 0.2435897424.4% |
|
||
| jalview.io.FileFormats jalview.io.FileFormats | 0.2424% |
|
||
| jalview.ws.uimodel.AlignAnalysisUIText jalview.ws.uimodel.AlignAnalysisUIText | 0.2424% |
|
||
| jalview.datamodel.features.FeatureStore jalview.datamodel.features.FeatureStore | 0.2386706923.9% |
|
||
| jalview.ws.WSClient jalview.ws.WSClient | 0.2352941223.5% |
|
||
| jalview.ws.params.simple.Option jalview.ws.params.simple.Option | 0.2333333323.3% |
|
||
| jalview.datamodel.SequenceNode jalview.datamodel.SequenceNode | 0.2307692323.1% |
|
||
| jalview.gui.ScalePanel jalview.gui.ScalePanel | 0.2235294122.4% |
|
||
| jalview.datamodel.SequenceGroup jalview.datamodel.SequenceGroup | 0.2168674821.7% |
|
||
| jalview.ws.params.simple.IntegerParameter jalview.ws.params.simple.IntegerParameter | 0.2142857221.4% |
|
||
| jalview.io.FileParse jalview.io.FileParse | 0.213296421.3% |
|
||
| jalview.gui.SeqCanvas jalview.gui.SeqCanvas | 0.2074898820.7% |
|
||
| jalview.gui.AppJmol jalview.gui.AppJmol | 0.2065217320.7% |
|
||
| jalview.ws.rest.InputType jalview.ws.rest.InputType | 0.2056074720.6% |
|
||
| jalview.datamodel.DBRefEntry jalview.datamodel.DBRefEntry | 0.2054794620.5% |
|
||
| jalview.datamodel.Alignment jalview.datamodel.Alignment | 0.204281920.4% |
|
||
| jalview.datamodel.features.FeatureAttributes jalview.datamodel.features.FeatureAttributes | 0.2042253520.4% |
|
||
| com.stevesoft.pat.patInt com.stevesoft.pat.patInt | 0.220% |
|
||
| jalview.structure.StructureCommand jalview.structure.StructureCommand | 0.220% |
|
||
| jalview.ws.params.simple.DoubleParameter jalview.ws.params.simple.DoubleParameter | 0.1956521719.6% |
|
||
| jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Setting jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Setting | 0.1935483819.4% |
|
||
| jalview.datamodel.SecondaryStructureCount jalview.datamodel.SecondaryStructureCount | 0.1914062519.1% |
|
||
| jalview.ws.params.simple.StringParameter jalview.ws.params.simple.StringParameter | 0.190476219% |
|
||
| jalview.gui.TreeCanvas jalview.gui.TreeCanvas | 0.1904296919% |
|
||
| jalview.schemes.TCoffeeColourScheme jalview.schemes.TCoffeeColourScheme | 0.1803278618% |
|
||
| jalview.schemes.ColourSchemes jalview.schemes.ColourSchemes | 0.1794871817.9% |
|
||
| jalview.schemes.Blosum62ColourScheme jalview.schemes.Blosum62ColourScheme | 0.176470617.6% |
|
||
| jalview.gui.AnnotationLabels jalview.gui.AnnotationLabels | 0.1751968617.5% |
|
||
| jalview.log.JLogger jalview.log.JLogger | 0.1648351716.5% |
|
||
| jalview.io.IdentifyFile jalview.io.IdentifyFile | 0.1642651316.4% |
|
||
| jalview.datamodel.SequenceFeature jalview.datamodel.SequenceFeature | 0.1618705116.2% |
|
||
| jalview.datamodel.AlignmentAnnotation jalview.datamodel.AlignmentAnnotation | 0.1617819516.2% |
|
||
| jalview.ws.jws1.WS1Client jalview.ws.jws1.WS1Client | 0.1616% |
|
||
| com.stevesoft.pat.parsePerl com.stevesoft.pat.parsePerl | 0.1598639516% |
|
||
| com.stevesoft.pat.RegRes com.stevesoft.pat.RegRes | 0.159420315.9% |
|
||
| jalview.util.StringUtils jalview.util.StringUtils | 0.1581920815.8% |
|
||
| jalview.analysis.AnnotationSorter jalview.analysis.AnnotationSorter | 0.1562515.6% |
|
||
| jalview.gui.Desktop.MyDesktopManager jalview.gui.Desktop.MyDesktopManager | 0.1555555615.6% |
|
||
| jalview.viewmodel.seqfeatures.FeatureRendererSettings jalview.viewmodel.seqfeatures.FeatureRendererSettings | 0.1555555615.6% |
|
||
| jalview.structure.StructureImportSettings jalview.structure.StructureImportSettings | 0.1538461615.4% |
|
||
| jalview.gui.TreePanel jalview.gui.TreePanel | 0.1478599214.8% |
|
||
| jalview.ws.rest.RestClient jalview.ws.rest.RestClient | 0.1466666614.7% |
|
||
| jalview.gui.Desktop.MyDesktopPane jalview.gui.Desktop.MyDesktopPane | 0.1428571514.3% |
|
||
| jalview.gui.AlignFrame jalview.gui.AlignFrame | 0.1390106413.9% |
|
||
| jalview.workers.AlignCalcWorker jalview.workers.AlignCalcWorker | 0.1333333413.3% |
|
||
| jalview.schemes.HmmerGlobalBackground jalview.schemes.HmmerGlobalBackground | 0.1333333413.3% |
|
||
| jalview.schemes.PIDColourScheme jalview.schemes.PIDColourScheme | 0.1333333413.3% |
|
||
| org.json.JSONObject org.json.JSONObject | 0.1322549913.2% |
|
||
| jalview.gui.AnnotationPanel jalview.gui.AnnotationPanel | 0.1313340213.1% |
|
||
| jalview.datamodel.Sequence jalview.datamodel.Sequence | 0.128870312.9% |
|
||
| jalview.gui.Desktop jalview.gui.Desktop | 0.1251390412.5% |
|
||
| jalview.viewmodel.seqfeatures.FeaturesDisplayed jalview.viewmodel.seqfeatures.FeaturesDisplayed | 0.12512.5% |
|
||
| jalview.ws.rest.params.SeqGroupIndexVector jalview.ws.rest.params.SeqGroupIndexVector | 0.12408759412.4% |
|
||
| jalview.analysis.CrossRef jalview.analysis.CrossRef | 0.12320328512.3% |
|
||
| jalview.bin.Console jalview.bin.Console | 0.1179245311.8% |
|
||
| jalview.datamodel.PDBEntry jalview.datamodel.PDBEntry | 0.1166666711.7% |
|
||
| jalview.ws2.params.SimpleParamDatastore jalview.ws2.params.SimpleParamDatastore | 0.11428571511.4% |
|
||
| jalview.datamodel.Annotation jalview.datamodel.Annotation | 0.11428571511.4% |
|
||
| jalview.schemes.RNAHelicesColour jalview.schemes.RNAHelicesColour | 0.1095890411% |
|
||
| jalview.gui.StructureViewerBase jalview.gui.StructureViewerBase | 0.1082251110.8% |
|
||
| jalview.log.JLoggerLog4j jalview.log.JLoggerLog4j | 0.10679611610.7% |
|
||
| jalview.ext.jmol.JalviewJmolBinding jalview.ext.jmol.JalviewJmolBinding | 0.10441767410.4% |
|
||
| jalview.util.DBRefUtils jalview.util.DBRefUtils | 0.10416666410.4% |
|
||
| jalview.ws.rest.params.AnnotationFile jalview.ws.rest.params.AnnotationFile | 0.10256410410.3% |
|
||
| org.json.JSONArray org.json.JSONArray | 0.1010638310.1% |
|
||
| jalview.util.Platform jalview.util.Platform | 0.0965346549.7% |
|
||
| jalview.ws2.client.jpred4.JPred4WSDiscoverer jalview.ws2.client.jpred4.JPred4WSDiscoverer | 0.09523819.5% |
|
||
| jalview.datamodel.HiddenColumns jalview.datamodel.HiddenColumns | 0.089622649% |
|
||
| jalview.ws2.client.slivka.SlivkaAlignmentWSClient jalview.ws2.client.slivka.SlivkaAlignmentWSClient | 0.086956528.7% |
|
||
| jalview.ws.dbsources.Xfam jalview.ws.dbsources.Xfam | 0.086956528.7% |
|
||
| jalview.structures.models.AAStructureBindingModel jalview.structures.models.AAStructureBindingModel | 0.0850574758.5% |
|
||
| jalview.ws.jws1.Discoverer jalview.ws.jws1.Discoverer | 0.0848484868.5% |
|
||
| jalview.ext.ensembl.EnsemblSequenceFetcher jalview.ext.ensembl.EnsemblSequenceFetcher | 0.0833333368.3% |
|
||
| jalview.analysis.scoremodels.ScoreModels jalview.analysis.scoremodels.ScoreModels | 0.0833333368.3% |
|
||
| jalview.ws2.client.ebi.JobDispatcherWSDiscoverer jalview.ws2.client.ebi.JobDispatcherWSDiscoverer | 0.081632658.2% |
|
||
| jalview.schemes.FeatureColour jalview.schemes.FeatureColour | 0.077894747.8% |
|
||
| jalview.ws.jws2.jabaws2.Jws2Instance jalview.ws.jws2.jabaws2.Jws2Instance | 0.076923087.7% |
|
||
| jalview.schemes.HmmerLocalBackground jalview.schemes.HmmerLocalBackground | 0.076923087.7% |
|
||
| jalview.schemes.HmmerColourScheme jalview.schemes.HmmerColourScheme | 0.076923087.7% |
|
||
| jalview.analysis.AlignmentAnnotationUtils jalview.analysis.AlignmentAnnotationUtils | 0.0762711847.6% |
|
||
| jalview.datamodel.ColumnSelection.IntList jalview.datamodel.ColumnSelection.IntList | 0.074766357.5% |
|
||
| jalview.datamodel.features.SequenceFeatures jalview.datamodel.features.SequenceFeatures | 0.0700636957% |
|
||
| jalview.util.ColorUtils jalview.util.ColorUtils | 0.069060776.9% |
|
||
| jalview.gui.ProgressBar jalview.gui.ProgressBar | 0.068965526.9% |
|
||
| jalview.gui.IdPanel jalview.gui.IdPanel | 0.067264576.7% |
|
||
| jalview.gui.AppJmolBinding jalview.gui.AppJmolBinding | 0.065420566.5% |
|
||
| com.stevesoft.pat.RegOpt com.stevesoft.pat.RegOpt | 0.06474826.5% |
|
||
| jalview.schemes.HMMMatchScoreColourScheme jalview.schemes.HMMMatchScoreColourScheme | 0.063829796.4% |
|
||
| jalview.analysis.scoremodels.ScoreMatrix jalview.analysis.scoremodels.ScoreMatrix | 0.0617283966.2% |
|
||
| ext.vamsas.ServiceHandle ext.vamsas.ServiceHandle | 0.061224496.1% |
|
||
| jalview.gui.ViewSelectionMenu jalview.gui.ViewSelectionMenu | 0.059405945.9% |
|
||
| jalview.ws.seqfetcher.ASequenceFetcher jalview.ws.seqfetcher.ASequenceFetcher | 0.0577777775.8% |
|
||
| jalview.workers.InformationThread jalview.workers.InformationThread | 0.0555555565.6% |
|
||
| jalview.io.FileFormat jalview.io.FileFormat | 0.0551724145.5% |
|
||
| jalview.structure.StructureSelectionManager jalview.structure.StructureSelectionManager | 0.055057625.5% |
|
||
| jalview.ws.seqfetcher.DbSourceProxyImpl jalview.ws.seqfetcher.DbSourceProxyImpl | 0.0540540555.4% |
|
||
| jalview.bin.Cache jalview.bin.Cache | 0.05013555% |
|
||
| jalview.ws2.client.slivka.SlivkaAnnotationWSClient jalview.ws2.client.slivka.SlivkaAnnotationWSClient | 0.055% |
|
||
| jalview.analysis.GeneticCodes jalview.analysis.GeneticCodes | 0.0496894425% |
|
||
| jalview.ws.jws2.Jws2Discoverer jalview.ws.jws2.Jws2Discoverer | 0.0416666684.2% |
|
||
| jalview.ws.jws2.JabaParamStore jalview.ws.jws2.JabaParamStore | 0.0416666684.2% |
|
||
| jalview.ws.dbsources.Pdb jalview.ws.dbsources.Pdb | 0.0408163264.1% |
|
||
| jalview.gui.SliderPanel jalview.gui.SliderPanel | 0.0348837233.5% |
|
||
| jalview.ws.jws1.JPredClient jalview.ws.jws1.JPredClient | 0.0310559013.1% |
|
||
| jalview.ws2.client.slivka.SlivkaWSClient jalview.ws2.client.slivka.SlivkaWSClient | 0.033% |
|
||
| jalview.util.FileUtils jalview.util.FileUtils | 0.0267857152.7% |
|
||
| jalview.ext.jmol.JmolCommands jalview.ext.jmol.JmolCommands | 0.0267175572.7% |
|
||
| jalview.schemes.ClustalxColourScheme jalview.schemes.ClustalxColourScheme | 0.0254237282.5% |
|
||
| jalview.controller.AlignViewController jalview.controller.AlignViewController | 0.0237288142.4% |
|
||
| jalview.gui.StructureViewer jalview.gui.StructureViewer | 0.0232558142.3% |
|
||
| jalview.datamodel.ColumnSelection jalview.datamodel.ColumnSelection | 0.017182131.7% |
|
||
| jalview.analysis.AlignmentUtils jalview.analysis.AlignmentUtils | 0.0170268511.7% |
|
||
| jalview.bin.Jalview jalview.bin.Jalview | 0.0153349481.5% |
|
||
| jalview.ws.dbsources.Uniprot jalview.ws.dbsources.Uniprot | 0.015325671.5% |
|
||
| jalview.hmmer.HmmerCommand jalview.hmmer.HmmerCommand | 0.0141509441.4% |
|
||
| jalview.gui.SeqPanel jalview.gui.SeqPanel | 0.0129954521.3% |
|
||
| jalview.datamodel.SearchResults jalview.datamodel.SearchResults | 0.0128205131.3% |
|
||
| jalview.analysis.AlignSeq jalview.analysis.AlignSeq | 0.01275510251.3% |
|
||
| jalview.io.SequenceAnnotationReport jalview.io.SequenceAnnotationReport | 0.0112359551.1% |
|
||
| jalview.util.HttpUtils jalview.util.HttpUtils | 0.010101011% |
|
||
| jalview.viewmodel.seqfeatures.FeatureRendererModel jalview.viewmodel.seqfeatures.FeatureRendererModel | 0.00938967150.9% |
|
||
| jalview.ext.ensembl.EnsemblGene jalview.ext.ensembl.EnsemblGene | 0.0081632650.8% |
|
||
| jalview.renderer.seqfeatures.FeatureRenderer jalview.renderer.seqfeatures.FeatureRenderer | 0.007547170.8% |
|
||
| jalview.gui.QuitHandler jalview.gui.QuitHandler | 0.00722021660.7% |
|
||
| com.stevesoft.pat.CaseMgr com.stevesoft.pat.CaseMgr | 0.00278551530.3% |
|
||