|
jalview.ws.params.simple.StringParameter.Builder
jalview.ws.params.simple.StringParameter.Builder
|
1.0100%
|
|
|
jalview.ws2.api.WebService.Builder
jalview.ws2.api.WebService.Builder
|
1.0100%
|
|
|
jalview.ws.params.ParamDatastoreI
jalview.ws.params.ParamDatastoreI
|
1.0100%
|
|
|
jalview.ws2.actions.annotation.AnnotationAction.Builder
jalview.ws2.actions.annotation.AnnotationAction.Builder
|
1.0100%
|
|
|
jalview.datamodel.Profiles
jalview.datamodel.Profiles
|
0.866666786.7%
|
|
|
jalview.ws.params.simple.Option.Builder
jalview.ws.params.simple.Option.Builder
|
0.880%
|
|
|
jalview.ws2.api.WebService
jalview.ws2.api.WebService
|
0.880%
|
|
|
jalview.ws.params.simple.BooleanOption.Builder
jalview.ws.params.simple.BooleanOption.Builder
|
0.7857142778.6%
|
|
|
jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
|
0.77577.5%
|
|
|
jalview.ws2.actions.alignment.AlignmentAction.Builder
jalview.ws2.actions.alignment.AlignmentAction.Builder
|
0.7575%
|
|
|
jalview.workers.SecondaryStructureConsensusThread
jalview.workers.SecondaryStructureConsensusThread
|
0.735849173.6%
|
|
|
jalview.ws2.client.slivka.SlivkaParamStoreFactory
jalview.ws2.client.slivka.SlivkaParamStoreFactory
|
0.7028985670.3%
|
|
|
jalview.datamodel.Profile
jalview.datamodel.Profile
|
0.672131167.2%
|
|
|
jalview.ws.params.simple.DoubleParameter.Builder
jalview.ws.params.simple.DoubleParameter.Builder
|
0.655172465.5%
|
|
|
jalview.ws.params.simple.IntegerParameter.Builder
jalview.ws.params.simple.IntegerParameter.Builder
|
0.655172465.5%
|
|
|
jalview.gui.AnnotationChooser
jalview.gui.AnnotationChooser
|
0.6177777661.8%
|
|
|
jalview.ws2.actions.alignment.AlignmentAction
jalview.ws2.actions.alignment.AlignmentAction
|
0.660%
|
|
|
jalview.workers.AlignCalcManager2.WorkerManager
jalview.workers.AlignCalcManager2.WorkerManager
|
0.583333358.3%
|
|
|
jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
|
0.577181257.7%
|
|
|
jalview.ws2.actions.BaseAction
jalview.ws2.actions.BaseAction
|
0.5428571754.3%
|
|
|
jalview.workers.AlignCalcManager2.SimpleWorkerManager
jalview.workers.AlignCalcManager2.SimpleWorkerManager
|
0.464285746.4%
|
|
|
jalview.ws2.actions.annotation.AnnotationAction
jalview.ws2.actions.annotation.AnnotationAction
|
0.4444444544.4%
|
|
|
jalview.analysis.Conservation
jalview.analysis.Conservation
|
0.434782643.5%
|
|
|
jalview.ws.params.simple.BooleanOption
jalview.ws.params.simple.BooleanOption
|
0.4242424442.4%
|
|
|
org.json.JSONTokener
org.json.JSONTokener
|
0.4132841241.3%
|
|
|
jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
|
0.3959183739.6%
|
|
|
jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
|
0.3428571534.3%
|
|
|
jalview.ws2.actions.BaseAction.Builder
jalview.ws2.actions.BaseAction.Builder
|
0.3333333433.3%
|
|
|
jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
|
0.3221649532.2%
|
|
|
jalview.ws.api.UIinfo
jalview.ws.api.UIinfo
|
0.313725531.4%
|
|
|
jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
|
0.2887438828.9%
|
|
|
jalview.workers.ConservationThread
jalview.workers.ConservationThread
|
0.2619047826.2%
|
|
|
org.json.JSONObject.Null
org.json.JSONObject.Null
|
0.2525%
|
|
|
jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
|
0.2439024424.4%
|
|
|
jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
|
0.2435897424.4%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.2380952423.8%
|
|
|
jalview.ws.params.simple.Option
jalview.ws.params.simple.Option
|
0.2333333323.3%
|
|
|
jalview.ws.params.simple.IntegerParameter
jalview.ws.params.simple.IntegerParameter
|
0.2142857221.4%
|
|
|
jalview.ws.rest.InputType
jalview.ws.rest.InputType
|
0.2056074720.6%
|
|
|
jalview.ws.params.simple.DoubleParameter
jalview.ws.params.simple.DoubleParameter
|
0.1956521719.6%
|
|
|
jalview.ws.params.simple.StringParameter
jalview.ws.params.simple.StringParameter
|
0.190476219%
|
|
|
jalview.log.JalviewAppender
jalview.log.JalviewAppender
|
0.1666666716.7%
|
|
|
jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
|
0.1616%
|
|
|
jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.1562515.6%
|
|
|
jalview.util.Format
jalview.util.Format
|
0.1490683314.9%
|
|
|
jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
|
0.1466666614.7%
|
|
|
jalview.log.JLogger
jalview.log.JLogger
|
0.1428571514.3%
|
|
|
org.json.JSONObject
org.json.JSONObject
|
0.1322549913.2%
|
|
|
jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
|
|
|
jalview.workers.AlignCalcManager2
jalview.workers.AlignCalcManager2
|
0.1232876712.3%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.1172413811.7%
|
|
|
jalview.ws2.params.SimpleParamDatastore
jalview.ws2.params.SimpleParamDatastore
|
0.11428571511.4%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.11428571511.4%
|
|
|
jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
|
0.1111111111.1%
|
|
|
jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
|
0.10679611610.7%
|
|
|
jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
|
|
|
org.json.JSONArray
org.json.JSONArray
|
0.1010638310.1%
|
|
|
jalview.ws.WSClient
jalview.ws.WSClient
|
0.098039229.8%
|
|
|
jalview.ws2.client.jpred4.JPred4WSDiscoverer
jalview.ws2.client.jpred4.JPred4WSDiscoverer
|
0.09523819.5%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.0918032759.2%
|
|
|
jalview.util.StringUtils
jalview.util.StringUtils
|
0.090395489%
|
|
|
jalview.bin.Console
jalview.bin.Console
|
0.089622649%
|
|
|
jalview.ws2.client.slivka.SlivkaAlignmentWSClient
jalview.ws2.client.slivka.SlivkaAlignmentWSClient
|
0.086956528.7%
|
|
|
jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0848484868.5%
|
|
|
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
|
0.081632658.2%
|
|
|
jalview.io.FileFormats
jalview.io.FileFormats
|
0.088%
|
|
|
ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
|
|
|
jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
|
0.0566037745.7%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.055118115.5%
|
|
|
jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
|
0.0538542755.4%
|
|
|
jalview.ws2.client.slivka.SlivkaAnnotationWSClient
jalview.ws2.client.slivka.SlivkaAnnotationWSClient
|
0.055%
|
|
|
jalview.util.ColorUtils
jalview.util.ColorUtils
|
0.0497237565%
|
|
|
jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.0493827164.9%
|
|
|
jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
|
0.0468754.7%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.038932153.9%
|
|
|
jalview.workers.InformationThread
jalview.workers.InformationThread
|
0.0370370373.7%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.0346534663.5%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.0338983053.4%
|
|
|
jalview.datamodel.SequenceGroup
jalview.datamodel.SequenceGroup
|
0.0313253033.1%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.0311653113.1%
|
|
|
jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
|
|
|
jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.0304878063%
|
|
|
jalview.ws2.client.slivka.SlivkaWSClient
jalview.ws2.client.slivka.SlivkaWSClient
|
0.033%
|
|
|
jalview.analysis.AlignmentAnnotationUtils
jalview.analysis.AlignmentAnnotationUtils
|
0.0296610173%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.0275862072.8%
|
|
|
jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.026887282.7%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.0241077022.4%
|
|
|
jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
|
0.021739132.2%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.0204865562%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0203012452%
|
|
|
jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.019230771.9%
|
|
|
jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.0138568131.4%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.0117154811.2%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.0093786630.9%
|
|
|
jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.008968610.9%
|
|
|
jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.0066445180.7%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.00564971750.6%
|
|
|
jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.0029527560.3%
|
|
