|
jalview.renderer.ScaleRenderer.ScaleMark
jalview.renderer.ScaleRenderer.ScaleMark
|
1.0100%
|
|
|
com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
|
0.8461538684.6%
|
|
|
jalview.analysis.AverageDistanceEngine
jalview.analysis.AverageDistanceEngine
|
0.8461538684.6%
|
|
|
jalview.analysis.TreeEngine
jalview.analysis.TreeEngine
|
0.7428571674.3%
|
|
|
jalview.datamodel.ContactMapHolder
jalview.datamodel.ContactMapHolder
|
0.7115384371.2%
|
|
|
jalview.datamodel.FloatContactMatrix
jalview.datamodel.FloatContactMatrix
|
0.6666%
|
|
|
com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
|
0.657142965.7%
|
|
|
com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
|
0.6565%
|
|
|
com.stevesoft.pat.wrap.StringWrap
com.stevesoft.pat.wrap.StringWrap
|
0.62562.5%
|
|
|
jalview.util.ParseHtmlBodyAndLinks
jalview.util.ParseHtmlBodyAndLinks
|
0.594202959.4%
|
|
|
com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
|
0.5930232459.3%
|
|
|
jalview.ws.datamodel.alphafold.MappableContactMatrix
jalview.ws.datamodel.alphafold.MappableContactMatrix
|
0.5355648453.6%
|
|
|
com.stevesoft.pat.FastChar
com.stevesoft.pat.FastChar
|
0.550%
|
|
|
jalview.datamodel.GroupSetHolder
jalview.datamodel.GroupSetHolder
|
0.550%
|
|
|
com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
|
0.448979644.9%
|
|
|
jalview.renderer.ScaleRenderer
jalview.renderer.ScaleRenderer
|
0.4444%
|
|
|
jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
0.4285714342.9%
|
|
|
com.stevesoft.pat.Range
com.stevesoft.pat.Range
|
0.3863636338.6%
|
|
|
com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
|
0.3680555536.8%
|
|
|
jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
|
0.3428571534.3%
|
|
|
com.stevesoft.pat.Or
com.stevesoft.pat.Or
|
0.3205128332.1%
|
|
|
com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
|
0.330%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.299212629.9%
|
|
|
jalview.datamodel.GroupSet
jalview.datamodel.GroupSet
|
0.2931034629.3%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.285714328.6%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.2736401627.4%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.2626025726.3%
|
|
|
com.stevesoft.pat.NullPattern
com.stevesoft.pat.NullPattern
|
0.2525%
|
|
|
com.stevesoft.pat.StringRule
com.stevesoft.pat.StringRule
|
0.2525%
|
|
|
com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
|
0.2454545524.5%
|
|
|
jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
|
|
|
jalview.datamodel.BinaryNode
jalview.datamodel.BinaryNode
|
0.2196969722%
|
|
|
jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.2159468421.6%
|
|
|
jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
|
0.1842105218.4%
|
|
|
jalview.util.MapList
jalview.util.MapList
|
0.179217.9%
|
|
|
jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.1725490217.3%
|
|
|
jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.1643700716.4%
|
|
|
jalview.io.NewickFile
jalview.io.NewickFile
|
0.1516393415.2%
|
|
|
jalview.ws.datamodel.alphafold.PAEContactMatrix
jalview.ws.datamodel.alphafold.PAEContactMatrix
|
0.1504424815%
|
|
|
com.stevesoft.pat.Branch
com.stevesoft.pat.Branch
|
0.140939614.1%
|
|
|
com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
|
0.137513.8%
|
|
|
com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
|
0.1203703712%
|
|
|
com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
|
0.1086956510.9%
|
|
|
jalview.datamodel.ContactListImpl
jalview.datamodel.ContactListImpl
|
0.1016949110.2%
|
|
|
com.stevesoft.pat.Replacer
com.stevesoft.pat.Replacer
|
0.091891899.2%
|
|
|
jalview.bin.Console
jalview.bin.Console
|
0.089622649%
|
|
|
jalview.log.JLogger
jalview.log.JLogger
|
0.087912098.8%
|
|
|
com.stevesoft.pat.ReplaceRule
com.stevesoft.pat.ReplaceRule
|
0.08771938.8%
|
|
|
jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.0779220767.8%
|
|
|
jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
|
0.0579710165.8%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.055307765.5%
|
|
|
jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
|
0.0348468833.5%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.0284552852.8%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.027397262.7%
|
|
|
jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
|
0.0264900662.6%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.0236065572.4%
|
|
|
jalview.util.MappingUtils
jalview.util.MappingUtils
|
0.0224948882.2%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.019801982%
|
|
|
jalview.math.Matrix
jalview.math.Matrix
|
0.0196078442%
|
|
|
jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.0186915881.9%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.0141509441.4%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.0127388541.3%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.011787821.2%
|
|
|
jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.0091093120.9%
|
|
|
jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.008968610.9%
|
|
|
jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.0082730090.8%
|
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.00687285230.7%
|
|
|
jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.00461893760.5%
|
|
|
com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
|
0.00278551530.3%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.0027700830.3%
|
|
