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Coverage Report

Class AlignmentUtilsTests

 
AlignmentUtilsTests 5858 00 00 0.124
1.0100%
 
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 176840126387814 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testMakeCdsAlignment_multipleProteinsAlignmentUtilsTests.testMakeCdsAlignment_multipleProteins 176840126380514 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testHaveCrossRefAlignmentUtilsTests.testHaveCrossRef 176840126378614 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 176840126388114 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testExpandContextAlignmentUtilsTests.testExpandContext 176840126375414 Jan 14:34:23 1PASS 0.0110.011  
AlignmentUtilsTests.testMakeCdsAlignmentAlignmentUtilsTests.testMakeCdsAlignment 176840126379514 Jan 14:34:23 1PASS 0.0030.003  
AlignmentUtilsTests.testSecondaryStructureAnnotationColourAlignmentUtilsTests.testSecondaryStructureAnnotationColour 176840126387114 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_mappedProteinProteinAlignmentUtilsTests.testAlignSequenceAs_mappedProteinProtein 176840126374514 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testFindCdsForProteinAlignmentUtilsTests.testFindCdsForProtein 176840126377014 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_withIntronsAlignmentUtilsTests.testAlignSequenceAs_withMapping_withIntrons 176840126374914 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testIsMappableAlignmentUtilsTests.testIsMappable 176840126378814 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testAddReferenceAnnotationsAlignmentUtilsTests.testAddReferenceAnnotations 176840126371314 Jan 14:34:23 1PASS 0.0030.003  
AlignmentUtilsTests.testMapCdnaToProtein_forSubsequenceAlignmentUtilsTests.testMapCdnaToProtein_forSubsequence 176840126380714 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testA3mInsertShiftsAlignmentUtilsTests.testA3mInsertShifts 176840126370614 Jan 14:34:23 1PASS 0.0010.001  
AlignmentUtilsTests.testFindCdsPositionsAlignmentUtilsTests.testFindCdsPositions 176840126377514 Jan 14:34:23 1PASS 0.0010.001  
AlignmentUtilsTests.testSecondaryStructureAnnotationColourAlignmentUtilsTests.testSecondaryStructureAnnotationColour 176840126387314 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_prioritiseXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_prioritiseXrefs 176840126381414 Jan 14:34:23 1PASS 0.0010.001  
AlignmentUtilsTests.testShowOrHideSequenceAnnotationsAlignmentUtilsTests.testShowOrHideSequenceAnnotations 176840126388314 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testTransferFeatures_withOmitAlignmentUtilsTests.testTransferFeatures_withOmit 176840126389114 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testIsSSAnnotationPresentAlignmentUtilsTests.testIsSSAnnotationPresent 176840126379314 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_withUnmappedProteinAlignmentUtilsTests.testAlignSequenceAs_withMapping_withUnmappedProtein 176840126375114 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testExpandContext_annotationAlignmentUtilsTests.testExpandContext_annotation 176840126376714 Jan 14:34:23 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignAsSameSequencesAlignmentUtilsTests.testAlignAsSameSequences 176840126372314 Jan 14:34:23 1PASS 0.0030.003  
AlignmentUtilsTests.testIsSSAnnotationPresentAlignmentUtilsTests.testIsSSAnnotationPresent 176840126379214 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testAlignAs_alternateTranscriptsUngappedAlignmentUtilsTests.testAlignAs_alternateTranscriptsUngapped 176840126373114 Jan 14:34:23 1PASS 0.0020.002  
AlignmentUtilsTests.testAlignProteinAsDnaAlignmentUtilsTests.testAlignProteinAsDna 176840126373514 Jan 14:34:23 1PASS 0.0020.002  
AlignmentUtilsTests.testAddMappedPositions_withStopCodonAlignmentUtilsTests.testAddMappedPositions_withStopCodon 176840126371114 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testAddMappedPositionsAlignmentUtilsTests.testAddMappedPositions 176840126370914 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testGetSequencesByNameAlignmentUtilsTests.testGetSequencesByName 176840126378214 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 176840126387714 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testa3mToMSAAlignmentUtilsTests.testa3mToMSA 176840126392714 Jan 14:34:23 1PASS 0.0010.001  
AlignmentUtilsTests.testSecondaryStructureAnnotationColourAlignmentUtilsTests.testSecondaryStructureAnnotationColour 176840126387014 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testTransferFeatures_withSelectAlignmentUtilsTests.testTransferFeatures_withSelect 176840126389514 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testTransferGeneLociAlignmentUtilsTests.testTransferGeneLoci 176840126390114 Jan 14:34:23 1PASS 0.0020.002  
AlignmentUtilsTests.testAlignProteinAsDna_incompleteStartCodonAlignmentUtilsTests.testAlignProteinAsDna_incompleteStartCodon 176840126374014 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 176840126387914 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_noIntronsAlignmentUtilsTests.testAlignSequenceAs_withMapping_noIntrons 176840126374714 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testGetAlignmentAnnotationForSourceAlignmentUtilsTests.testGetAlignmentAnnotationForSource 176840126378014 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testa3mToMSA_byfileAlignmentUtilsTests.testa3mToMSA_byfile 176840126393014 Jan 14:34:23 1PASS 0.0340.034  
AlignmentUtilsTests.testSecondaryStructureAnnotationColourAlignmentUtilsTests.testSecondaryStructureAnnotationColour 176840126387214 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testFindCdsPositions_fivePrimeIncompleteAlignmentUtilsTests.testFindCdsPositions_fivePrimeIncomplete 176840126377814 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testMapCdsToProteinAlignmentUtilsTests.testMapCdsToProtein 176840126380914 Jan 14:34:23 1PASS 0.0010.001  
AlignmentUtilsTests.testMakeCdsAlignment_filterProductsAlignmentUtilsTests.testMakeCdsAlignment_filterProducts 176840126380214 Jan 14:34:23 1PASS 0.0010.001  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_withStartAndStopCodonsAlignmentUtilsTests.testMapProteinAlignmentToCdna_withStartAndStopCodons 176840126381614 Jan 14:34:23 1PASS 0.0410.041  
AlignmentUtilsTests.testAddReferenceContactMapAlignmentUtilsTests.testAddReferenceContactMap 176840126371814 Jan 14:34:23 1PASS 0.0030.003  
AlignmentUtilsTests.testIsSSAnnotationPresentAlignmentUtilsTests.testIsSSAnnotationPresent 176840126379114 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testIsSSAnnotationPresentAlignmentUtilsTests.testIsSSAnnotationPresent 176840126379014 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testAlignAsSameSequencesMultipleSubSeqAlignmentUtilsTests.testAlignAsSameSequencesMultipleSubSeq 176840126372914 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_withXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_withXrefs 176840126386014 Jan 14:34:23 1PASS 0.0010.001  
AlignmentUtilsTests.testMakeCdsAlignment_alternativeTranscriptsAlignmentUtilsTests.testMakeCdsAlignment_alternativeTranscripts 176840126380014 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_noXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_noXrefs 176840126381214 Jan 14:34:23 1PASS 0.0010.001  
AlignmentUtilsTests.testTranslatesAsAlignmentUtilsTests.testTranslatesAs 176840126391814 Jan 14:34:23 1PASS 0.0070.007  
AlignmentUtilsTests.testAlignSequenceAs_keepIntronGapsOnlyAlignmentUtilsTests.testAlignSequenceAs_keepIntronGapsOnly 176840126374214 Jan 14:34:23 1PASS 0.0010.001  
AlignmentUtilsTests.testTransferFeaturesAlignmentUtilsTests.testTransferFeatures 176840126388814 Jan 14:34:23 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignSequenceAs_withTrailingPeptideAlignmentUtilsTests.testAlignSequenceAs_withTrailingPeptide 176840126375314 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testFindCdsForProtein_noUTRAlignmentUtilsTests.testFindCdsForProtein_noUTR 176840126377114 Jan 14:34:23 1PASS 0.0020.002  
AlignmentUtilsTests.testHasCrossRefAlignmentUtilsTests.testHasCrossRef 176840126378414 Jan 14:34:23 1PASS 0.00  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 176840126388014 Jan 14:34:23 1PASS 0.00