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jalview.ws2.actions.hmmer.PhmmerAction.Builder
jalview.ws2.actions.hmmer.PhmmerAction.Builder
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1.0100%
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jalview.ws2.api.WebService.Builder
jalview.ws2.api.WebService.Builder
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1.0100%
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jalview.ws.params.ParamDatastoreI
jalview.ws.params.ParamDatastoreI
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1.0100%
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jalview.json.binding.biojs.BioJSReleasePojo
jalview.json.binding.biojs.BioJSReleasePojo
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0.8461538684.6%
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jalview.ws2.api.WebService
jalview.ws2.api.WebService
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0.880%
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jalview.gui.ItemsRenderer
jalview.gui.ItemsRenderer
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0.777777877.8%
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jalview.ws.jws2.jabaws2.Jws2InstanceFactory
jalview.ws.jws2.jabaws2.Jws2InstanceFactory
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0.695652269.6%
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jalview.json.binding.biojs.BioJSRepositoryPojo
jalview.json.binding.biojs.BioJSRepositoryPojo
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jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
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0.666666766.7%
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jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
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0.6470588464.7%
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jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
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0.62562.5%
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jalview.ws2.actions.BaseAction
jalview.ws2.actions.BaseAction
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0.660%
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jalview.util.ParseHtmlBodyAndLinks
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0.594202959.4%
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jalview.io.BioJsHTMLOutput
jalview.io.BioJsHTMLOutput
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0.53653.6%
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jalview.gui.BlogReader
jalview.gui.BlogReader
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0.483425448.3%
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jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
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0.4711538647.1%
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jalview.ws.api.UIinfo
jalview.ws.api.UIinfo
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0.4313725543.1%
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jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
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0.4285714342.9%
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jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
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0.4285714342.9%
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
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0.4086538640.9%
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jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
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0.4040816440.4%
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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0.440%
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
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0.388888938.9%
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org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
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0.3853503238.5%
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jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
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0.3815789538.2%
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
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0.37537.5%
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jalview.renderer.ScaleRenderer
jalview.renderer.ScaleRenderer
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0.3636%
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
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0.3589743735.9%
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jalview.ws.api.ServiceWithParameters
jalview.ws.api.ServiceWithParameters
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0.3333333433.3%
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jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
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0.3333333433.3%
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jalview.ws.jws2.PreferredServiceRegistry
jalview.ws.jws2.PreferredServiceRegistry
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0.3280423332.8%
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jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
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0.3221649532.2%
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org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
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0.2945544429.5%
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jalview.ws2.actions.hmmer.PhmmerAction
jalview.ws2.actions.hmmer.PhmmerAction
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0.2941176629.4%
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jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
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0.285714328.6%
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
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0.285714328.6%
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jalview.util.MessageManager
jalview.util.MessageManager
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0.285714328.6%
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jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
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0.2641509526.4%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
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0.263157926.3%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.2620689626.2%
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jalview.renderer.AnnotationRendererFactory
jalview.renderer.AnnotationRendererFactory
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0.2525%
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jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
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0.2435897424.4%
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jalview.ws2.actions.BaseAction.Builder
jalview.ws2.actions.BaseAction.Builder
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0.2380952423.8%
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jalview.ws.WSClient
jalview.ws.WSClient
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0.2352941223.5%
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
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0.219269121.9%
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jalview.util.HttpUtils
jalview.util.HttpUtils
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0.2171717121.7%
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
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0.2159789421.6%
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jalview.gui.BlogReader.LaunchJvBrowserOnItem
jalview.gui.BlogReader.LaunchJvBrowserOnItem
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0.2083333320.8%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
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0.2056074720.6%
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jalview.datamodel.Profiles
jalview.datamodel.Profiles
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0.220%
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
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0.1768292617.7%
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
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0.1653543316.5%
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jalview.datamodel.Profile
jalview.datamodel.Profile
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0.1639344216.4%
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
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0.1616%
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jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
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0.1466666614.7%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
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0.1458333314.6%
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jalview.log.JLogger
jalview.log.JLogger
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0.1428571514.3%
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jalview.bin.Console
jalview.bin.Console
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0.1415094314.2%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
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0.132812513.3%
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
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0.12408759412.4%
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jalview.workers.AlignCalcManager2
jalview.workers.AlignCalcManager2
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0.1232876712.3%
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jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
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0.12318840612.3%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
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0.1215686312.2%
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jalview.ws2.params.SimpleParamDatastore
jalview.ws2.params.SimpleParamDatastore
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0.11428571511.4%
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jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
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0.10679611610.7%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
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0.10256410410.3%
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org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
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0.096774199.7%
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jalview.ws2.client.jpred4.JPred4WSDiscoverer
jalview.ws2.client.jpred4.JPred4WSDiscoverer
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0.09523819.5%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
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0.09523819.5%
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jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
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0.0939597349.4%
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jalview.util.JSONUtils
jalview.util.JSONUtils
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0.090909099.1%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.090395489%
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
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0.086956528.7%
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
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0.0848484868.5%
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
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0.0833333368.3%
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jalview.io.FileFormats
jalview.io.FileFormats
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0.088%
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jalview.workers.AlignCalcManager2.SimpleWorkerManager
jalview.workers.AlignCalcManager2.SimpleWorkerManager
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0.0714285757.1%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
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0.07135477.1%
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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0.07085027.1%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
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0.0644783156.4%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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0.062950826.3%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
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0.0623020056.2%
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
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0.061224496.1%
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
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0.0577777775.8%
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
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0.0540540555.4%
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jalview.bin.Cache
jalview.bin.Cache
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0.0487804864.9%
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
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0.0444444464.4%
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jalview.gui.WsParamSetManager
jalview.gui.WsParamSetManager
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0.0429447854.3%
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jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
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0.0408163264.1%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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0.0407013154.1%
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jalview.ws.jws2.Jws2ClientFactory
jalview.ws.jws2.Jws2ClientFactory
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0.044%
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org.json.simple.JSONObject
org.json.simple.JSONObject
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0.037735853.8%
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
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0.0323325623.2%
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
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0.0310559013.1%
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jalview.io.FileFormat
jalview.io.FileFormat
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0.0275862072.8%
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
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0.0264900662.6%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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0.0258697592.6%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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0.0208333342.1%
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jalview.util.QuickSort
jalview.util.QuickSort
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0.0194174761.9%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
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0.0186915881.9%
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
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0.018264841.8%
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jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
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0.015325671.5%
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jalview.util.Platform
jalview.util.Platform
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0.0123762381.2%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
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0.0117924531.2%
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jalview.gui.Desktop
jalview.gui.Desktop
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0.0111234711.1%
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jalview.bin.Jalview
jalview.bin.Jalview
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0.0104923321%
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jalview.ws2.client.ebi.ParamStores
jalview.ws2.client.ebi.ParamStores
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0.0102040811%
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jalview.ws2.client.ebi.PhmmerWSClient
jalview.ws2.client.ebi.PhmmerWSClient
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0.0101522841%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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0.0100418411%
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jalview.gui.IdPanel
jalview.gui.IdPanel
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0.008968610.9%
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jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
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0.0082644620.8%
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jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
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0.0081632650.8%
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org.json.simple.JSONArray
org.json.simple.JSONArray
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0.0080645160.8%
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jalview.util.Comparison
jalview.util.Comparison
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0.0078740160.8%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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0.00768245850.8%
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
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0.00687285230.7%
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