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Coverage Report

Class AlignmentUtilsTests

 
AlignmentUtilsTests 5858 00 00 0.072
1.0100%
 
AlignmentUtilsTests.testAddMappedPositions_withStopCodonAlignmentUtilsTests.testAddMappedPositions_withStopCodon 17677541851187 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testFindCdsForProtein_noUTRAlignmentUtilsTests.testFindCdsForProtein_noUTR 17677541851757 Jan 02:49:45 1PASS 0.0020.002  
AlignmentUtilsTests.testFindCdsForProteinAlignmentUtilsTests.testFindCdsForProtein 17677541851737 Jan 02:49:45 1PASS 0.0010.001  
AlignmentUtilsTests.testMakeCdsAlignment_alternativeTranscriptsAlignmentUtilsTests.testMakeCdsAlignment_alternativeTranscripts 17677541852017 Jan 02:49:45 1PASS 0.0010.001  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 17677541852287 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testAlignAs_alternateTranscriptsUngappedAlignmentUtilsTests.testAlignAs_alternateTranscriptsUngapped 17677541851377 Jan 02:49:45 1PASS 0.0020.002  
AlignmentUtilsTests.testSecondaryStructureAnnotationColourAlignmentUtilsTests.testSecondaryStructureAnnotationColour 17677541852257 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testAddReferenceContactMapAlignmentUtilsTests.testAddReferenceContactMap 17677541851257 Jan 02:49:45 1PASS 0.0030.003  
AlignmentUtilsTests.testShowOrHideSequenceAnnotationsAlignmentUtilsTests.testShowOrHideSequenceAnnotations 17677541852337 Jan 02:49:45 1PASS 0.0010.001  
AlignmentUtilsTests.testTranslatesAsAlignmentUtilsTests.testTranslatesAs 17677541852437 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 17677541852307 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_withIntronsAlignmentUtilsTests.testAlignSequenceAs_withMapping_withIntrons 17677541851537 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testIsSSAnnotationPresentAlignmentUtilsTests.testIsSSAnnotationPresent 17677541851947 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testTransferFeatures_withOmitAlignmentUtilsTests.testTransferFeatures_withOmit 17677541852377 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_withTrailingPeptideAlignmentUtilsTests.testAlignSequenceAs_withTrailingPeptide 17677541851567 Jan 02:49:45 1PASS 0.0010.001  
AlignmentUtilsTests.testFindCdsPositions_fivePrimeIncompleteAlignmentUtilsTests.testFindCdsPositions_fivePrimeIncomplete 17677541851817 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_withUnmappedProteinAlignmentUtilsTests.testAlignSequenceAs_withMapping_withUnmappedProtein 17677541851557 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testTransferFeatures_withSelectAlignmentUtilsTests.testTransferFeatures_withSelect 17677541852387 Jan 02:49:45 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignProteinAsDnaAlignmentUtilsTests.testAlignProteinAsDna 17677541851417 Jan 02:49:45 1PASS 0.0020.002  
AlignmentUtilsTests.testHaveCrossRefAlignmentUtilsTests.testHaveCrossRef 17677541851887 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testAlignAsSameSequencesAlignmentUtilsTests.testAlignAsSameSequences 17677541851307 Jan 02:49:45 1PASS 0.0030.003  
AlignmentUtilsTests.testMakeCdsAlignment_filterProductsAlignmentUtilsTests.testMakeCdsAlignment_filterProducts 17677541852047 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testSecondaryStructureAnnotationColourAlignmentUtilsTests.testSecondaryStructureAnnotationColour 17677541852267 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_withStartAndStopCodonsAlignmentUtilsTests.testMapProteinAlignmentToCdna_withStartAndStopCodons 17677541852167 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testMakeCdsAlignmentAlignmentUtilsTests.testMakeCdsAlignment 17677541851967 Jan 02:49:45 1PASS 0.0040.004  
AlignmentUtilsTests.testGetSequencesByNameAlignmentUtilsTests.testGetSequencesByName 17677541851857 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_withXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_withXrefs 17677541852187 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testAddMappedPositionsAlignmentUtilsTests.testAddMappedPositions 17677541851167 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_noXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_noXrefs 17677541852127 Jan 02:49:45 1PASS 0.0010.001  
AlignmentUtilsTests.testIsMappableAlignmentUtilsTests.testIsMappable 17677541851907 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testMapCdsToProteinAlignmentUtilsTests.testMapCdsToProtein 17677541852107 Jan 02:49:45 1PASS 0.0010.001  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_prioritiseXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_prioritiseXrefs 17677541852147 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testExpandContextAlignmentUtilsTests.testExpandContext 17677541851587 Jan 02:49:45 1PASS 0.010.01  
AlignmentUtilsTests.testA3mInsertShiftsAlignmentUtilsTests.testA3mInsertShifts 17677541851137 Jan 02:49:45 1PASS 0.0010.001  
AlignmentUtilsTests.testSecondaryStructureAnnotationColourAlignmentUtilsTests.testSecondaryStructureAnnotationColour 17677541852247 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testGetAlignmentAnnotationForSourceAlignmentUtilsTests.testGetAlignmentAnnotationForSource 17677541851837 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testMapCdnaToProtein_forSubsequenceAlignmentUtilsTests.testMapCdnaToProtein_forSubsequence 17677541852087 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 17677541852327 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testa3mToMSA_byfileAlignmentUtilsTests.testa3mToMSA_byfile 17677541852467 Jan 02:49:45 1PASS 0.0280.028  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 17677541852297 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testIsSSAnnotationPresentAlignmentUtilsTests.testIsSSAnnotationPresent 17677541851957 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_keepIntronGapsOnlyAlignmentUtilsTests.testAlignSequenceAs_keepIntronGapsOnly 17677541851477 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_noIntronsAlignmentUtilsTests.testAlignSequenceAs_withMapping_noIntrons 17677541851517 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testFindCdsPositionsAlignmentUtilsTests.testFindCdsPositions 17677541851787 Jan 02:49:45 1PASS 0.0020.002  
AlignmentUtilsTests.testAlignProteinAsDna_incompleteStartCodonAlignmentUtilsTests.testAlignProteinAsDna_incompleteStartCodon 17677541851457 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_mappedProteinProteinAlignmentUtilsTests.testAlignSequenceAs_mappedProteinProtein 17677541851497 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testTransferFeaturesAlignmentUtilsTests.testTransferFeatures 17677541852357 Jan 02:49:45 1PASS 0.0010.001  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 17677541852317 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testIsSSAnnotationPresentAlignmentUtilsTests.testIsSSAnnotationPresent 17677541851937 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testIsSSAnnotationPresentAlignmentUtilsTests.testIsSSAnnotationPresent 17677541851927 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testAddReferenceAnnotationsAlignmentUtilsTests.testAddReferenceAnnotations 17677541851207 Jan 02:49:45 1PASS 0.0030.003  
AlignmentUtilsTests.testHasCrossRefAlignmentUtilsTests.testHasCrossRef 17677541851867 Jan 02:49:45 1PASS 0.0010.001  
AlignmentUtilsTests.testa3mToMSAAlignmentUtilsTests.testa3mToMSA 17677541852457 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testMakeCdsAlignment_multipleProteinsAlignmentUtilsTests.testMakeCdsAlignment_multipleProteins 17677541852067 Jan 02:49:45 1PASS 0.0010.001  
AlignmentUtilsTests.testTransferGeneLociAlignmentUtilsTests.testTransferGeneLoci 17677541852407 Jan 02:49:45 1PASS 0.0010.001  
AlignmentUtilsTests.testSecondaryStructureAnnotationColourAlignmentUtilsTests.testSecondaryStructureAnnotationColour 17677541852237 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testExpandContext_annotationAlignmentUtilsTests.testExpandContext_annotation 17677541851717 Jan 02:49:45 1PASS 0.00  
AlignmentUtilsTests.testAlignAsSameSequencesMultipleSubSeqAlignmentUtilsTests.testAlignAsSameSequencesMultipleSubSeq 17677541851357 Jan 02:49:45 1PASS 0.0010.001