|
jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
|
1.0100%
|
|
|
jalview.analysis.Conservation
jalview.analysis.Conservation
|
0.875878287.6%
|
|
|
jalview.datamodel.Profiles
jalview.datamodel.Profiles
|
0.866666786.7%
|
|
|
com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
|
0.8461538684.6%
|
|
|
jalview.workers.SecondaryStructureConsensusThread
jalview.workers.SecondaryStructureConsensusThread
|
0.736842173.7%
|
|
|
com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
|
0.6285714562.9%
|
|
|
jalview.workers.ConservationThread
jalview.workers.ConservationThread
|
0.5909090659.1%
|
|
|
jalview.analysis.Finder
jalview.analysis.Finder
|
0.578181857.8%
|
|
|
com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
|
0.550%
|
|
|
com.stevesoft.pat.wrap.StringWrap
com.stevesoft.pat.wrap.StringWrap
|
0.550%
|
|
|
jalview.util.SparseCount
jalview.util.SparseCount
|
0.440%
|
|
|
jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
|
0.3449477334.5%
|
|
|
jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
|
0.3428571534.3%
|
|
|
jalview.datamodel.Profile
jalview.datamodel.Profile
|
0.3278688532.8%
|
|
|
jalview.datamodel.SearchResults.Match
jalview.datamodel.SearchResults.Match
|
0.2575757525.8%
|
|
|
com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
|
0.2430555524.3%
|
|
|
jalview.datamodel.VisibleContigsIterator
jalview.datamodel.VisibleContigsIterator
|
0.2340425623.4%
|
|
|
jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
|
|
|
jalview.ext.android.SparseShortArray
jalview.ext.android.SparseShortArray
|
0.225988722.6%
|
|
|
jalview.workers.AlignCalcManager2.SimpleWorkerManager
jalview.workers.AlignCalcManager2.SimpleWorkerManager
|
0.2142857221.4%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.1866108818.7%
|
|
|
com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
|
0.1845454618.5%
|
|
|
jalview.workers.AlignCalcManager2.WorkerManager
jalview.workers.AlignCalcManager2.WorkerManager
|
0.1666666716.7%
|
|
|
jalview.log.JalviewAppender
jalview.log.JalviewAppender
|
0.1666666716.7%
|
|
|
jalview.log.JLogger
jalview.log.JLogger
|
0.1428571514.3%
|
|
|
jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
|
0.1372549113.7%
|
|
|
jalview.datamodel.SearchResults
jalview.datamodel.SearchResults
|
0.1346153913.5%
|
|
|
jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
|
0.1337683513.4%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.1337579613.4%
|
|
|
jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.132812513.3%
|
|
|
jalview.util.Format
jalview.util.Format
|
0.12629412.6%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.11428571511.4%
|
|
|
jalview.ext.android.ContainerHelpers
jalview.ext.android.ContainerHelpers
|
0.1111111111.1%
|
|
|
jalview.bin.Cache.VersionChecker
jalview.bin.Cache.VersionChecker
|
0.1111111111.1%
|
|
|
jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
|
0.10679611610.7%
|
|
|
com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
|
0.098639469.9%
|
|
|
jalview.ws2.client.jpred4.JPred4WSDiscoverer
jalview.ws2.client.jpred4.JPred4WSDiscoverer
|
0.09523819.5%
|
|
|
jalview.bin.Console
jalview.bin.Console
|
0.089622649%
|
|
|
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
|
0.081632658.2%
|
|
|
jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
|
0.0734693867.3%
|
|
|
jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.069958857%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.058860765.9%
|
|
|
jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
|
0.0566037745.7%
|
|
|
jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
|
0.0468754.7%
|
|
|
jalview.util.MapList
jalview.util.MapList
|
0.04644.6%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.0433604344.3%
|
|
|
com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
|
0.03753.8%
|
|
|
jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
|
0.0362537763.6%
|
|
|
com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
|
0.0362318833.6%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.0346534663.5%
|
|
|
jalview.analysis.AlignmentAnnotationUtils
jalview.analysis.AlignmentAnnotationUtils
|
0.0296610173%
|
|
|
jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
|
0.0285110882.9%
|
|
|
jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
|
0.0268456382.7%
|
|
|
jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.0243902432.4%
|
|
|
jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0242424232.4%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.0242.4%
|
|
|
jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.0237849022.4%
|
|
|
jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
|
0.021739132.2%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.0212264152.1%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.0194174761.9%
|
|
|
jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.014388491.4%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.01275510251.3%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0124843951.2%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.0106482931.1%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.0093786630.9%
|
|
|
jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.0086393090.9%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.0078740160.8%
|
|
|
jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.00641025650.6%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.00564971750.6%
|
|
|
com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
|
0.00278551530.3%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.00166852060.2%
|
|
