Class AlignViewportTest

Class	Tests	Fail	Error	Time (secs)	% Tests Success
AlignViewportTest	1111	11	00	1.097	0.9090909490.9%

Tests	Started	Status	Time (secs)	Message
AlignViewportTest.testShowOrDontShowOccupancyAlignViewportTest.testShowOrDontShowOccupancy	17677537126417 Jan 02:41:52	3FAIL	0.1810.181	Expected occupancy to be non-null in column 5 expected object to not be null Expected occupancy to be non-null in column 5 expected object to not be null java.lang.AssertionError: Expected occupancy to be non-null in column 5 expected object to not be null at org.testng.Assert.fail(Assert.java:110) at org.testng.Assert.assertNotNull(Assert.java:1319) at jalview.gui.AlignViewportTest.testShowOrDontShowOccupancy(AlignViewportTest.java:482) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:139) at org.testng.internal.invokers.TestInvoker.invokeMethod(TestInvoker.java:677) at org.testng.internal.invokers.TestInvoker.invokeTestMethod(TestInvoker.java:221) at org.testng.internal.invokers.MethodRunner.runInSequence(MethodRunner.java:50) at org.testng.internal.invokers.TestInvoker$MethodInvocationAgent.invoke(TestInvoker.java:969) at org.testng.internal.invokers.TestInvoker.invokeTestMethods(TestInvoker.java:194) at org.testng.internal.invokers.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:148) at org.testng.internal.invokers.TestMethodWorker.run(TestMethodWorker.java:128) at java.base/java.util.ArrayList.forEach(ArrayList.java:1541) at org.testng.TestRunner.privateRun(TestRunner.java:829) at org.testng.TestRunner.run(TestRunner.java:602) at org.testng.SuiteRunner.runTest(SuiteRunner.java:437) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:431) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:391) at org.testng.SuiteRunner.run(SuiteRunner.java:330) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:95) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1256) at org.testng.TestNG.runSuitesLocally(TestNG.java:1176) at org.testng.TestNG.runSuites(TestNG.java:1099) at org.testng.TestNG.run(TestNG.java:1067) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:141) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:90) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:61) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:133) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:71) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74)
AlignViewportTest.testGetSelectionAsNewSequences_withContactMatricesAlignViewportTest.testGetSelectionAsNewSequences_withContactMatrices	17677537123477 Jan 02:41:52	1PASS	0.0490.049
AlignViewportTest.testSetGlobalColourSchemeAlignViewportTest.testSetGlobalColourScheme	17677537124607 Jan 02:41:52	1PASS	0.0450.045
AlignViewportTest.testUpdateConservation_qualityOnlyAlignViewportTest.testUpdateConservation_qualityOnly	17677537128597 Jan 02:41:52	1PASS	0.2080.208
AlignViewportTest.testDeregisterMapping_withNoReferenceAlignViewportTest.testDeregisterMapping_withNoReference	17677537120167 Jan 02:41:52	1PASS	0.0610.061
AlignViewportTest.testHideRevealSequencesAlignViewportTest.testHideRevealSequences	17677537123987 Jan 02:41:52	1PASS	0.0070.007
AlignViewportTest.testSetGetHasSearchResultsAlignViewportTest.testSetGetHasSearchResults	17677537124147 Jan 02:41:52	1PASS	0.0440.044
AlignViewportTest.testDeregisterMapping_withReferenceAlignViewportTest.testDeregisterMapping_withReference	17677537120797 Jan 02:41:52	1PASS	0.0350.035
AlignViewportTest.testDeregisterMapping_onCloseViewAlignViewportTest.testDeregisterMapping_onCloseView	17677537118907 Jan 02:41:51	1PASS	0.1180.118
AlignViewportTest.testGetConsensusSeqAlignViewportTest.testGetConsensusSeq	17677537121167 Jan 02:41:52	1PASS	0.2180.218
AlignViewportTest.testSetSelectionGroupAlignViewportTest.testSetSelectionGroup	17677537125077 Jan 02:41:52	1PASS	0.1310.131

Coverage Report

Class AlignViewportTest