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Coverage Report

Test testLoadVCFContig

Test
testLoadVCFContig 1PASS 12 Dec 14:20:51 0.005
 
testLoadVCFContig
jalview.datamodel.Profiles   jalview.datamodel.Profiles 0.866666786.7%
jalview.datamodel.features.FeatureSources   jalview.datamodel.features.FeatureSources 0.7575%
jalview.datamodel.features.FeatureSource   jalview.datamodel.features.FeatureSource 0.7142857371.4%
jalview.workers.SecondaryStructureConsensusThread   jalview.workers.SecondaryStructureConsensusThread 0.6747967667.5%
jalview.ext.htsjdk.VCFReader   jalview.ext.htsjdk.VCFReader 0.674418667.4%
jalview.io.vcf.VCFLoader.VCFMap   jalview.io.vcf.VCFLoader.VCFMap 0.660%
jalview.datamodel.features.FeatureAttributes.AttributeData   jalview.datamodel.features.FeatureAttributes.AttributeData 0.531914953.2%
jalview.io.vcf.VCFLoader   jalview.io.vcf.VCFLoader 0.3758064537.6%
jalview.datamodel.Profile   jalview.datamodel.Profile 0.3278688532.8%
jalview.ext.htsjdk.HtsContigDb   jalview.ext.htsjdk.HtsContigDb 0.3076923230.8%
jalview.datamodel.features.FeatureAttributes   jalview.datamodel.features.FeatureAttributes 0.2403100724%
jalview.datamodel.features.FeatureStore   jalview.datamodel.features.FeatureStore 0.220543822.1%
jalview.datamodel.features.SequenceFeatures   jalview.datamodel.features.SequenceFeatures 0.2101910921%
jalview.workers.AlignCalcManager   jalview.workers.AlignCalcManager 0.190476219%
jalview.util.MapList   jalview.util.MapList 0.1661538516.6%
jalview.datamodel.SequenceFeature   jalview.datamodel.SequenceFeature 0.1546762615.5%
jalview.analysis.AAFrequency   jalview.analysis.AAFrequency 0.153996115.4%
jalview.analysis.AnnotationSorter   jalview.analysis.AnnotationSorter 0.132812513.3%
jalview.datamodel.Annotation   jalview.datamodel.Annotation 0.0714285757.1%
jalview.datamodel.Sequence   jalview.datamodel.Sequence 0.0514579755.1%
jalview.gui.AlignmentPanel   jalview.gui.AlignmentPanel 0.0482352934.8%
jalview.viewmodel.AlignmentViewport   jalview.viewmodel.AlignmentViewport 0.04801674.8%
jalview.datamodel.SecondaryStructureCount   jalview.datamodel.SecondaryStructureCount 0.0468754.7%
jalview.util.StringUtils   jalview.util.StringUtils 0.0442477874.4%
jalview.gui.Console   jalview.gui.Console 0.0366972463.7%
jalview.analysis.AlignmentAnnotationUtils   jalview.analysis.AlignmentAnnotationUtils 0.033018873.3%
jalview.bin.Cache   jalview.bin.Cache 0.0275482092.8%
jalview.util.MappingUtils   jalview.util.MappingUtils 0.0237068962.4%
jalview.util.Platform   jalview.util.Platform 0.0235849062.4%
jalview.viewmodel.styles.ViewStyle   jalview.viewmodel.styles.ViewStyle 0.021739132.2%
jalview.gui.AnnotationPanel   jalview.gui.AnnotationPanel 0.0199579842%
jalview.datamodel.Alignment   jalview.datamodel.Alignment 0.019301471.9%
jalview.analysis.AlignmentUtils   jalview.analysis.AlignmentUtils 0.0132978731.3%
jalview.renderer.ResidueShader   jalview.renderer.ResidueShader 0.01219512151.2%
jalview.datamodel.AlignmentAnnotation   jalview.datamodel.AlignmentAnnotation 0.0096618361%
jalview.gui.IdPanel   jalview.gui.IdPanel 0.008968610.9%
jalview.util.Comparison   jalview.util.Comparison 0.0078740160.8%
jalview.gui.IdCanvas   jalview.gui.IdCanvas 0.0070175440.7%
jalview.gui.AlignViewport   jalview.gui.AlignViewport 0.004566210.5%