Coverage Report
Test testSaveAndLoadAnnotationBasedTree
| Test | ||||
|---|---|---|---|---|
| testSaveAndLoadAnnotationBasedTree | 3FAIL | 3 Dec 13:32:03 | 2.363 |
java.lang.NullPointerException at jalview.jbgui.GTreePanel$11.actionPerformed(GTreePanel.java:240) at java.desktop/javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1967) at java.desktop/javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2308) at java.desktop/javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:405) at java.desktop/javax.swing.JToggleButton$ToggleButtonModel.setPressed(JToggleButton.java:401) at java.desktop/javax.swing.AbstractButton.doClick(AbstractButton.java:369) at java.desktop/javax.swing.AbstractButton.doClick(AbstractButton.java:349) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:141) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:90) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:61) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:133) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:71) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
| testSaveAndLoadAnnotationBasedTree | ||||
|---|---|---|---|---|
| jalview.gui.FeatureRenderer jalview.gui.FeatureRenderer | 1.0100% |
|
||
| jalview.io.DataSourceType jalview.io.DataSourceType | 1.0100% |
|
||
| jalview.ws.WSClient jalview.ws.WSClient | 1.0100% |
|
||
| jalview.project.Jalview2XML.JvAnnotRow jalview.project.Jalview2XML.JvAnnotRow | 1.0100% |
|
||
| jalview.datamodel.SecondaryStructureCount.SymbolCounts jalview.datamodel.SecondaryStructureCount.SymbolCounts | 1.0100% |
|
||
| jalview.datamodel.ResidueCount.SymbolCounts jalview.datamodel.ResidueCount.SymbolCounts | 1.0100% |
|
||
| net.meyfa.sha256.Sha256 net.meyfa.sha256.Sha256 | 0.9873417698.7% |
|
||
| jalview.jbgui.GAlignmentPanel jalview.jbgui.GAlignmentPanel | 0.9494% |
|
||
| jalview.analysis.TreeEngine jalview.analysis.TreeEngine | 0.923809592.4% |
|
||
| jalview.analysis.NJTree jalview.analysis.NJTree | 0.916666791.7% |
|
||
| jalview.analysis.Conservation jalview.analysis.Conservation | 0.869565287% |
|
||
| jalview.datamodel.Profiles jalview.datamodel.Profiles | 0.866666786.7% |
|
||
| jalview.viewmodel.styles.ViewStyle jalview.viewmodel.styles.ViewStyle | 0.858695685.9% |
|
||
| jalview.util.QuickSort.IntComparator jalview.util.QuickSort.IntComparator | 0.8571428785.7% |
|
||
| jalview.viewmodel.seqfeatures.FeatureRendererSettings jalview.viewmodel.seqfeatures.FeatureRendererSettings | 0.8444444584.4% |
|
||
| jalview.xml.binding.jalview.JalviewModel.JSeq.Pdbids jalview.xml.binding.jalview.JalviewModel.JSeq.Pdbids | 0.833333383.3% |
|
||
| jalview.analysis.scoremodels.SecondaryStructureDistanceModel jalview.analysis.scoremodels.SecondaryStructureDistanceModel | 0.816455781.6% |
|
||
| jalview.datamodel.Profile jalview.datamodel.Profile | 0.770491877% |
|
||
| jalview.workers.ConsensusThread jalview.workers.ConsensusThread | 0.722772372.3% |
|
||
| jalview.workers.SecondaryStructureConsensusThread jalview.workers.SecondaryStructureConsensusThread | 0.715447171.5% |
|
||
| jalview.xml.binding.jalview.SequenceSet jalview.xml.binding.jalview.SequenceSet | 0.6842105468.4% |
|
||
| jalview.ws.SequenceFetcher jalview.ws.SequenceFetcher | 0.678571467.9% |
|
||
| jalview.analysis.TreeBuilder jalview.analysis.TreeBuilder | 0.6746987767.5% |
|
||
| jalview.xml.binding.jalview.JalviewModel.FeatureSettings jalview.xml.binding.jalview.JalviewModel.FeatureSettings | 0.666666766.7% |
|
||
| jalview.xml.binding.jalview.Pdbentry jalview.xml.binding.jalview.Pdbentry | 0.666666766.7% |
|
||
| jalview.xml.binding.jalview.JalviewModel jalview.xml.binding.jalview.JalviewModel | 0.6153846461.5% |
|
||
| jalview.xml.binding.jalview.JalviewModel.JSeq jalview.xml.binding.jalview.JalviewModel.JSeq | 0.604166760.4% |
|
||
| jalview.xml.binding.jalview.MapListType jalview.xml.binding.jalview.MapListType | 0.660% |
|
||
| jalview.jbgui.GTreePanel jalview.jbgui.GTreePanel | 0.5939849659.4% |
|
||
| jalview.xml.binding.jalview.Feature jalview.xml.binding.jalview.Feature | 0.588235358.8% |
|
||
| jalview.jbgui.GAlignFrame jalview.jbgui.GAlignFrame | 0.571820757.2% |
|
||
| jalview.xml.binding.jalview.Sequence jalview.xml.binding.jalview.Sequence | 0.571428657.1% |
|
||
| jalview.workers.ConservationThread jalview.workers.ConservationThread | 0.568965556.9% |
|
||
| jalview.xml.binding.jalview.MatrixType jalview.xml.binding.jalview.MatrixType | 0.5434782554.3% |
|
||
| jalview.xml.binding.jalview.Annotation jalview.xml.binding.jalview.Annotation | 0.535087753.5% |
|
||
| jalview.workers.AlignCalcManager jalview.workers.AlignCalcManager | 0.5238095552.4% |
|
||
| jalview.gui.JalviewChangeSupport jalview.gui.JalviewChangeSupport | 0.550% |
|
||
| jalview.viewmodel.ViewportProperties jalview.viewmodel.ViewportProperties | 0.550% |
|
||
| jalview.xml.binding.jalview.Feature.OtherData jalview.xml.binding.jalview.Feature.OtherData | 0.550% |
|
||
| jalview.xml.binding.jalview.AnnotationElement jalview.xml.binding.jalview.AnnotationElement | 0.550% |
|
||
| jalview.xml.binding.jalview.SequenceType jalview.xml.binding.jalview.SequenceType | 0.550% |
|
||
| jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Group jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Group | 0.550% |
|
||
| jalview.xml.binding.jalview.Sequence.DBRef jalview.xml.binding.jalview.Sequence.DBRef | 0.550% |
|
||
| jalview.xml.binding.jalview.Pdbentry.Property jalview.xml.binding.jalview.Pdbentry.Property | 0.550% |
|
||
| jalview.xml.binding.jalview.MapListType.MapListFrom jalview.xml.binding.jalview.MapListType.MapListFrom | 0.550% |
|
||
| jalview.xml.binding.jalview.MapListType.MapListTo jalview.xml.binding.jalview.MapListType.MapListTo | 0.550% |
|
||
| jalview.analysis.scoremodels.SimilarityScoreModel jalview.analysis.scoremodels.SimilarityScoreModel | 0.550% |
|
||
| jalview.datamodel.GroupSetHolder jalview.datamodel.GroupSetHolder | 0.550% |
|
||
| jalview.schemes.TaylorColourScheme jalview.schemes.TaylorColourScheme | 0.550% |
|
||
| jalview.schemes.FlowerColourScheme jalview.schemes.FlowerColourScheme | 0.550% |
|
||
| jalview.schemes.ZappoColourScheme jalview.schemes.ZappoColourScheme | 0.550% |
|
||
| jalview.schemes.NucleotideAmbiguityColourScheme jalview.schemes.NucleotideAmbiguityColourScheme | 0.550% |
|
||
| jalview.schemes.PurinePyrimidineColourScheme jalview.schemes.PurinePyrimidineColourScheme | 0.550% |
|
||
| jalview.schemes.NucleotideColourScheme jalview.schemes.NucleotideColourScheme | 0.550% |
|
||
| jalview.schemes.BlossomColourScheme jalview.schemes.BlossomColourScheme | 0.550% |
|
||
| jalview.schemes.SunsetColourScheme jalview.schemes.SunsetColourScheme | 0.550% |
|
||
| jalview.schemes.OceanColourScheme jalview.schemes.OceanColourScheme | 0.550% |
|
||
| jalview.xml.binding.jalview.JalviewModel.Viewport jalview.xml.binding.jalview.JalviewModel.Viewport | 0.493548449.4% |
|
||
| jalview.util.MessageManager jalview.util.MessageManager | 0.4761904847.6% |
|
||
| jalview.datamodel.SecondaryStructureCount jalview.datamodel.SecondaryStructureCount | 0.445312544.5% |
|
||
| jalview.datamodel.ResidueCount jalview.datamodel.ResidueCount | 0.4436363644.4% |
|
||
| jalview.datamodel.FloatContactMatrix jalview.datamodel.FloatContactMatrix | 0.4444% |
|
||
| jalview.gui.ColourMenuHelper jalview.gui.ColourMenuHelper | 0.4322033843.2% |
|
||
| jalview.project.Jalview2XML.forwardRef jalview.project.Jalview2XML.forwardRef | 0.4285714342.9% |
|
||
| jalview.datamodel.HiddenCursorPosition jalview.datamodel.HiddenCursorPosition | 0.4285714342.9% |
|
||
| jalview.gui.TreePanel.TreeLoader jalview.gui.TreePanel.TreeLoader | 0.4255319242.6% |
|
||
| jalview.util.ShortcutKeyMaskExWrapper11 jalview.util.ShortcutKeyMaskExWrapper11 | 0.4166666641.7% |
|
||
| jalview.ws.dbsources.EmblSource jalview.ws.dbsources.EmblSource | 0.440% |
|
||
| jalview.schemes.HydrophobicColourScheme jalview.schemes.HydrophobicColourScheme | 0.440% |
|
||
| jalview.schemes.HelixColourScheme jalview.schemes.HelixColourScheme | 0.440% |
|
||
| jalview.schemes.TurnColourScheme jalview.schemes.TurnColourScheme | 0.440% |
|
||
| jalview.schemes.StrandColourScheme jalview.schemes.StrandColourScheme | 0.440% |
|
||
| jalview.schemes.BuriedColourScheme jalview.schemes.BuriedColourScheme | 0.440% |
|
||
| jalview.log.JalviewAppender jalview.log.JalviewAppender | 0.388888938.9% |
|
||
| jalview.analysis.AAFrequency jalview.analysis.AAFrequency | 0.385964938.6% |
|
||
| jalview.datamodel.PDBEntry.Type jalview.datamodel.PDBEntry.Type | 0.37537.5% |
|
||
| jalview.util.Comparison jalview.util.Comparison | 0.3740157537.4% |
|
||
| jalview.viewmodel.AlignmentViewport jalview.viewmodel.AlignmentViewport | 0.3583855335.8% |
|
||
| jalview.schemes.ResidueColourScheme jalview.schemes.ResidueColourScheme | 0.3571428735.7% |
|
||
| jalview.ws.jws2.MsaWSClient jalview.ws.jws2.MsaWSClient | 0.348993334.9% |
|
||
| jalview.gui.AlignmentPanel jalview.gui.AlignmentPanel | 0.3458823634.6% |
|
||
| jalview.gui.AlignViewport jalview.gui.AlignViewport | 0.3424657634.2% |
|
||
| jalview.xml.binding.jalview.VAMSAS jalview.xml.binding.jalview.VAMSAS | 0.3333333433.3% |
|
||
| jalview.viewmodel.ViewportRanges jalview.viewmodel.ViewportRanges | 0.33003333% |
|
||
| jalview.util.ColorUtils jalview.util.ColorUtils | 0.3175487531.8% |
|
||
| jalview.ws.rest.RestServiceDescription jalview.ws.rest.RestServiceDescription | 0.31531.5% |
|
||
| jalview.io.FileLoader jalview.io.FileLoader | 0.3133333331.3% |
|
||
| jalview.datamodel.SequenceFeature jalview.datamodel.SequenceFeature | 0.3093525230.9% |
|
||
| jalview.datamodel.CigarArray jalview.datamodel.CigarArray | 0.2959183829.6% |
|
||
| jalview.ws.dbsources.EmblCdsSource jalview.ws.dbsources.EmblCdsSource | 0.285714328.6% |
|
||
| jalview.schemes.JalviewColourScheme jalview.schemes.JalviewColourScheme | 0.285714328.6% |
|
||
| jalview.gui.IdCanvas jalview.gui.IdCanvas | 0.2807017628.1% |
|
||
| jalview.datamodel.SeqCigar jalview.datamodel.SeqCigar | 0.280487828% |
|
||
| jalview.datamodel.Sequence jalview.datamodel.Sequence | 0.2753001727.5% |
|
||
| jalview.ws.jws2.JabaPreset jalview.ws.jws2.JabaPreset | 0.2727272827.3% |
|
||
| jalview.analysis.AlignmentAnnotationUtils jalview.analysis.AlignmentAnnotationUtils | 0.268867926.9% |
|
||
| jalview.util.QuickSort jalview.util.QuickSort | 0.2653721626.5% |
|
||
| jalview.gui.PaintRefresher jalview.gui.PaintRefresher | 0.253521125.4% |
|
||
| jalview.ws.rest.params.Alignment jalview.ws.rest.params.Alignment | 0.2435897424.4% |
|
||
| jalview.io.FileFormats jalview.io.FileFormats | 0.2424% |
|
||
| jalview.project.Jalview2XML jalview.project.Jalview2XML | 0.2349277623.5% |
|
||
| jalview.datamodel.SequenceCursor jalview.datamodel.SequenceCursor | 0.2333333323.3% |
|
||
| jalview.gui.JvSwingUtils jalview.gui.JvSwingUtils | 0.2312925223.1% |
|
||
| jalview.analysis.scoremodels.ScoreModels jalview.analysis.scoremodels.ScoreModels | 0.2307692323.1% |
|
||
| jalview.datamodel.features.FeatureStore jalview.datamodel.features.FeatureStore | 0.226586122.7% |
|
||
| jalview.datamodel.DBRefEntry jalview.datamodel.DBRefEntry | 0.226027422.6% |
|
||
| jalview.datamodel.features.FeatureAttributes jalview.datamodel.features.FeatureAttributes | 0.224806222.5% |
|
||
| jalview.gui.IdwidthAdjuster jalview.gui.IdwidthAdjuster | 0.223684222.4% |
|
||
| jalview.xml.binding.jalview.MapOnAMatrixType jalview.xml.binding.jalview.MapOnAMatrixType | 0.2222222222.2% |
|
||
| jalview.datamodel.features.FeatureAttributes.AttributeData jalview.datamodel.features.FeatureAttributes.AttributeData | 0.2127659621.3% |
|
||
| jalview.datamodel.ContactMapHolder jalview.datamodel.ContactMapHolder | 0.2115384621.2% |
|
||
| jalview.datamodel.PDBEntry jalview.datamodel.PDBEntry | 0.2099644121% |
|
||
| jalview.ws.jws2.jabaws2.Jws2Instance jalview.ws.jws2.jabaws2.Jws2Instance | 0.2068965620.7% |
|
||
| jalview.datamodel.AlignmentAnnotation jalview.datamodel.AlignmentAnnotation | 0.2065217320.7% |
|
||
| jalview.ws.rest.InputType jalview.ws.rest.InputType | 0.2056074720.6% |
|
||
| jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Setting jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Setting | 0.1935483819.4% |
|
||
| jalview.datamodel.features.SequenceFeatures jalview.datamodel.features.SequenceFeatures | 0.191082819.1% |
|
||
| jalview.datamodel.BinaryNode jalview.datamodel.BinaryNode | 0.1893939418.9% |
|
||
| jalview.io.FileParse jalview.io.FileParse | 0.1855955718.6% |
|
||
| jalview.schemes.IdColourScheme jalview.schemes.IdColourScheme | 0.1739130517.4% |
|
||
| jalview.analysis.scoremodels.SimilarityParams jalview.analysis.scoremodels.SimilarityParams | 0.17187517.2% |
|
||
| jalview.datamodel.CigarBase jalview.datamodel.CigarBase | 0.1710914517.1% |
|
||
| jalview.io.IdentifyFile jalview.io.IdentifyFile | 0.1691394616.9% |
|
||
| jalview.analysis.AnnotationSorter jalview.analysis.AnnotationSorter | 0.1679687516.8% |
|
||
| jalview.log.JLogger jalview.log.JLogger | 0.1648351716.5% |
|
||
| jalview.datamodel.Alignment jalview.datamodel.Alignment | 0.1617647116.2% |
|
||
| jalview.ws.jws1.WS1Client jalview.ws.jws1.WS1Client | 0.1616% |
|
||
| jalview.gui.Desktop.MyDesktopManager jalview.gui.Desktop.MyDesktopManager | 0.1555555615.6% |
|
||
| jalview.util.Format jalview.util.Format | 0.1490683314.9% |
|
||
| jalview.schemes.TCoffeeColourScheme jalview.schemes.TCoffeeColourScheme | 0.1475409914.8% |
|
||
| jalview.datamodel.ContactMatrix jalview.datamodel.ContactMatrix | 0.1470588314.7% |
|
||
| jalview.gui.Desktop.MyDesktopPane jalview.gui.Desktop.MyDesktopPane | 0.1428571514.3% |
|
||
| jalview.ws.jws2.Jws2Discoverer jalview.ws.jws2.Jws2Discoverer | 0.1425742514.3% |
|
||
| jalview.analysis.CrossRef jalview.analysis.CrossRef | 0.1372950813.7% |
|
||
| jalview.gui.TreePanel jalview.gui.TreePanel | 0.132553613.3% |
|
||
| jalview.renderer.ResidueShader jalview.renderer.ResidueShader | 0.1280487812.8% |
|
||
| jalview.viewmodel.seqfeatures.FeaturesDisplayed jalview.viewmodel.seqfeatures.FeaturesDisplayed | 0.12512.5% |
|
||
| jalview.gui.AlignFrame jalview.gui.AlignFrame | 0.12487309412.5% |
|
||
| jalview.ws.rest.params.SeqGroupIndexVector jalview.ws.rest.params.SeqGroupIndexVector | 0.12408759412.4% |
|
||
| jalview.schemes.Blosum62ColourScheme jalview.schemes.Blosum62ColourScheme | 0.1176470611.8% |
|
||
| jalview.datamodel.Annotation jalview.datamodel.Annotation | 0.11428571511.4% |
|
||
| jalview.util.ShortcutKeyMaskExWrapper jalview.util.ShortcutKeyMaskExWrapper | 0.1111111111.1% |
|
||
| jalview.analysis.scoremodels.ScoreMatrix jalview.analysis.scoremodels.ScoreMatrix | 0.1111111111.1% |
|
||
| jalview.schemes.ColourSchemeProperty jalview.schemes.ColourSchemeProperty | 0.1111111111.1% |
|
||
| jalview.ws.rest.RestClient jalview.ws.rest.RestClient | 0.1111111111.1% |
|
||
| jalview.analysis.SeqsetUtils jalview.analysis.SeqsetUtils | 0.1095890411% |
|
||
| jalview.util.StringUtils jalview.util.StringUtils | 0.10914454610.9% |
|
||
| jalview.log.JLoggerLog4j jalview.log.JLoggerLog4j | 0.10679611610.7% |
|
||
| jalview.util.DBRefUtils jalview.util.DBRefUtils | 0.10542168510.5% |
|
||
| jalview.datamodel.AlignmentView.ScGroup jalview.datamodel.AlignmentView.ScGroup | 0.1052631610.5% |
|
||
| jalview.ws.rest.params.AnnotationFile jalview.ws.rest.params.AnnotationFile | 0.10256410410.3% |
|
||
| jalview.structure.StructureSelectionManager jalview.structure.StructureSelectionManager | 0.099132599.9% |
|
||
| jalview.bin.Console jalview.bin.Console | 0.0985221649.9% |
|
||
| jalview.gui.Desktop jalview.gui.Desktop | 0.097380419.7% |
|
||
| jalview.workers.AlignCalcWorker jalview.workers.AlignCalcWorker | 0.09523819.5% |
|
||
| jalview.datamodel.AlignmentView jalview.datamodel.AlignmentView | 0.090638939.1% |
|
||
| jalview.ws.dbsources.Xfam jalview.ws.dbsources.Xfam | 0.086956528.7% |
|
||
| jalview.schemes.FeatureColour jalview.schemes.FeatureColour | 0.086315798.6% |
|
||
| jalview.ws.jws2.Jws2Client jalview.ws.jws2.Jws2Client | 0.0843373468.4% |
|
||
| jalview.ext.ensembl.EnsemblSequenceFetcher jalview.ext.ensembl.EnsemblSequenceFetcher | 0.0833333368.3% |
|
||
| jalview.gui.Console jalview.gui.Console | 0.082568818.3% |
|
||
| jalview.datamodel.SequenceGroup jalview.datamodel.SequenceGroup | 0.082337328.2% |
|
||
| jalview.schemes.RNAHelicesColour jalview.schemes.RNAHelicesColour | 0.082191788.2% |
|
||
| jalview.gui.ProgressBar jalview.gui.ProgressBar | 0.081300818.1% |
|
||
| jalview.math.Matrix jalview.math.Matrix | 0.0784313757.8% |
|
||
| jalview.datamodel.SequenceNode jalview.datamodel.SequenceNode | 0.076923087.7% |
|
||
| jalview.schemes.ColourSchemes jalview.schemes.ColourSchemes | 0.070175447% |
|
||
| jalview.gui.IdPanel jalview.gui.IdPanel | 0.067264576.7% |
|
||
| jalview.schemes.PIDColourScheme jalview.schemes.PIDColourScheme | 0.066666676.7% |
|
||
| jalview.analysis.AlignmentUtils jalview.analysis.AlignmentUtils | 0.063829796.4% |
|
||
| ext.vamsas.ServiceHandle ext.vamsas.ServiceHandle | 0.061224496.1% |
|
||
| jalview.gui.AnnotationPanel jalview.gui.AnnotationPanel | 0.059873956% |
|
||
| jalview.gui.ViewSelectionMenu jalview.gui.ViewSelectionMenu | 0.059405945.9% |
|
||
| jalview.io.FileFormat jalview.io.FileFormat | 0.058394165.8% |
|
||
| jalview.ws.seqfetcher.ASequenceFetcher jalview.ws.seqfetcher.ASequenceFetcher | 0.0577777775.8% |
|
||
| jalview.util.Platform jalview.util.Platform | 0.0566037745.7% |
|
||
| jalview.ws.seqfetcher.DbSourceProxyImpl jalview.ws.seqfetcher.DbSourceProxyImpl | 0.0540540555.4% |
|
||
| jalview.ws.datamodel.alphafold.PAEContactMatrix jalview.ws.datamodel.alphafold.PAEContactMatrix | 0.0530973455.3% |
|
||
| jalview.datamodel.GroupSet jalview.datamodel.GroupSet | 0.051724145.2% |
|
||
| jalview.ws.jws1.Discoverer jalview.ws.jws1.Discoverer | 0.0512820525.1% |
|
||
| jalview.ws.datamodel.alphafold.MappableContactMatrix jalview.ws.datamodel.alphafold.MappableContactMatrix | 0.0502092065% |
|
||
| jalview.analysis.GeneticCodes jalview.analysis.GeneticCodes | 0.0496894425% |
|
||
| jalview.bin.Cache jalview.bin.Cache | 0.0482093654.8% |
|
||
| jalview.datamodel.HiddenSequences jalview.datamodel.HiddenSequences | 0.04566214.6% |
|
||
| jalview.gui.PCAPanel jalview.gui.PCAPanel | 0.043307094.3% |
|
||
| jalview.ws.dbsources.Pdb jalview.ws.dbsources.Pdb | 0.042553194.3% |
|
||
| jalview.ws.jws2.JabaParamStore jalview.ws.jws2.JabaParamStore | 0.0416666684.2% |
|
||
| jalview.util.MapList jalview.util.MapList | 0.038461543.8% |
|
||
| jalview.datamodel.ColumnSelection.IntList jalview.datamodel.ColumnSelection.IntList | 0.0373831763.7% |
|
||
| jalview.gui.ScalePanel jalview.gui.ScalePanel | 0.035156253.5% |
|
||
| jalview.ws.jws1.JPredClient jalview.ws.jws1.JPredClient | 0.0310559013.1% |
|
||
| jalview.viewmodel.seqfeatures.FeatureRendererModel jalview.viewmodel.seqfeatures.FeatureRendererModel | 0.029733963% |
|
||
| jalview.gui.SeqCanvas jalview.gui.SeqCanvas | 0.0289421162.9% |
|
||
| jalview.renderer.ResidueColourFinder jalview.renderer.ResidueColourFinder | 0.0238095242.4% |
|
||
| jalview.gui.TreeCanvas jalview.gui.TreeCanvas | 0.0215475022.2% |
|
||
| jalview.util.DigestUtils jalview.util.DigestUtils | 0.0212765952.1% |
|
||
| jalview.datamodel.HiddenColumns jalview.datamodel.HiddenColumns | 0.0188679251.9% |
|
||
| jalview.schemes.ClustalxColourScheme jalview.schemes.ClustalxColourScheme | 0.0169491531.7% |
|
||
| jalview.datamodel.HiddenColumnsCursor jalview.datamodel.HiddenColumnsCursor | 0.0156251.6% |
|
||
| jalview.ws.dbsources.Uniprot jalview.ws.dbsources.Uniprot | 0.0155642021.6% |
|
||
| jalview.gui.SequenceRenderer jalview.gui.SequenceRenderer | 0.0144230771.4% |
|
||
| jalview.controller.AlignViewController jalview.controller.AlignViewController | 0.0135593221.4% |
|
||
| jalview.datamodel.SearchResults jalview.datamodel.SearchResults | 0.0128205131.3% |
|
||
| jalview.analysis.AlignSeq jalview.analysis.AlignSeq | 0.01275510251.3% |
|
||
| jalview.gui.SeqPanel jalview.gui.SeqPanel | 0.0125082291.3% |
|
||
| jalview.io.SequenceAnnotationReport jalview.io.SequenceAnnotationReport | 0.0122699381.2% |
|
||
| jalview.util.HttpUtils jalview.util.HttpUtils | 0.01169590651.2% |
|
||
| jalview.renderer.AnnotationRenderer jalview.renderer.AnnotationRenderer | 0.0116071431.2% |
|
||
| jalview.gui.AnnotationLabels jalview.gui.AnnotationLabels | 0.0106496271.1% |
|
||
| jalview.bin.Jalview jalview.bin.Jalview | 0.00989208651% |
|
||
| jalview.gui.SequenceFetcher jalview.gui.SequenceFetcher | 0.0085106380.9% |
|
||
| jalview.ext.ensembl.EnsemblGene jalview.ext.ensembl.EnsemblGene | 0.0081632650.8% |
|
||
| jalview.renderer.seqfeatures.FeatureRenderer jalview.renderer.seqfeatures.FeatureRenderer | 0.007547170.8% |
|
||
| jalview.gui.QuitHandler jalview.gui.QuitHandler | 0.00722021660.7% |
|
||
| jalview.gui.RotatableCanvas jalview.gui.RotatableCanvas | 0.0051679590.5% |
|
||
| jalview.datamodel.ColumnSelection jalview.datamodel.ColumnSelection | 0.00343642620.3% |
|
||