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Coverage Report

Test pfamFileDataExtraction

Test
pfamFileDataExtraction 1PASS 6 Jan 01:33:59 0.051
 
pfamFileDataExtraction
com.stevesoft.pat.patInf   com.stevesoft.pat.patInf 1.0100%
com.stevesoft.pat.Rthings   com.stevesoft.pat.Rthings 0.8461538684.6%
com.stevesoft.pat.SubMark   com.stevesoft.pat.SubMark 0.880%
com.stevesoft.pat.StrPos   com.stevesoft.pat.StrPos 0.7558139675.6%
jalview.ws.jws2.jabaws2.Jws2InstanceFactory   jalview.ws.jws2.jabaws2.Jws2InstanceFactory 0.695652269.6%
com.stevesoft.pat.oneChar   com.stevesoft.pat.oneChar 0.6285714562.9%
com.stevesoft.pat.wrap.StringWrap   com.stevesoft.pat.wrap.StringWrap 0.62562.5%
com.stevesoft.pat.OrMark   com.stevesoft.pat.OrMark 0.57557.5%
com.stevesoft.pat.Range   com.stevesoft.pat.Range 0.5227272552.3%
com.stevesoft.pat.Skip2   com.stevesoft.pat.Skip2 0.518518551.9%
com.stevesoft.pat.FastMulti   com.stevesoft.pat.FastMulti 0.518518551.9%
com.stevesoft.pat.FastChar   com.stevesoft.pat.FastChar 0.550%
com.stevesoft.pat.Bracket   com.stevesoft.pat.Bracket 0.550%
jalview.io.AlignFile   jalview.io.AlignFile 0.486486548.6%
jalview.ws.jws2.jabaws2.Jws2Instance   jalview.ws.jws2.jabaws2.Jws2Instance 0.4519230745.2%
jalview.datamodel.HiddenCursorPosition   jalview.datamodel.HiddenCursorPosition 0.4285714342.9%
jalview.io.StockholmFile   jalview.io.StockholmFile 0.3917910539.2%
com.stevesoft.pat.Start   com.stevesoft.pat.Start 0.3636363736.4%
com.stevesoft.pat.DotMulti   com.stevesoft.pat.DotMulti 0.3623188436.2%
com.stevesoft.pat.Pattern   com.stevesoft.pat.Pattern 0.3541666635.4%
jalview.ws.api.UIinfo   jalview.ws.api.UIinfo 0.352941235.3%
jalview.bin.ApplicationSingletonProvider   jalview.bin.ApplicationSingletonProvider 0.3428571534.3%
jalview.util.Comparison   jalview.util.Comparison 0.3385826633.9%
com.stevesoft.pat.Regex   com.stevesoft.pat.Regex 0.3209090832.1%
com.stevesoft.pat.Or   com.stevesoft.pat.Or 0.294871829.5%
jalview.ws.jws2.JabaWsServerQuery   jalview.ws.jws2.JabaWsServerQuery 0.2708333427.1%
jalview.io.FileParse   jalview.io.FileParse 0.243767324.4%
jalview.datamodel.SequenceCursor   jalview.datamodel.SequenceCursor 0.2333333323.3%
jalview.io.IdentifyFile   jalview.io.IdentifyFile 0.2219020122.2%
jalview.ws.jws2.JabaPreset   jalview.ws.jws2.JabaPreset 0.2083333320.8%
com.stevesoft.pat.End   com.stevesoft.pat.End 0.2068965620.7%
com.stevesoft.pat.patInt   com.stevesoft.pat.patInt 0.220%
jalview.datamodel.Sequence   jalview.datamodel.Sequence 0.1799163218%
jalview.log.JalviewAppender   jalview.log.JalviewAppender 0.1666666716.7%
jalview.datamodel.DBRefEntry   jalview.datamodel.DBRefEntry 0.1643835616.4%
jalview.datamodel.AlignmentAnnotation   jalview.datamodel.AlignmentAnnotation 0.1617819516.2%
com.stevesoft.pat.parsePerl   com.stevesoft.pat.parsePerl 0.1598639516%
jalview.ws.api.ServiceWithParameters   jalview.ws.api.ServiceWithParameters 0.1458333314.6%
jalview.log.JLogger   jalview.log.JLogger 0.1428571514.3%
jalview.ws.jws2.JabaParamStore   jalview.ws.jws2.JabaParamStore 0.14062514.1%
com.stevesoft.pat.RegRes   com.stevesoft.pat.RegRes 0.1376811613.8%
jalview.util.DBRefUtils   jalview.util.DBRefUtils 0.11607142511.6%
jalview.ws.jws2.Jws2Discoverer   jalview.ws.jws2.Jws2Discoverer 0.1089743610.9%
jalview.log.JLoggerLog4j   jalview.log.JLoggerLog4j 0.10679611610.7%
jalview.bin.Console   jalview.bin.Console 0.09905669.9%
jalview.util.CaseInsensitiveString   jalview.util.CaseInsensitiveString 0.086956528.7%
jalview.ws2.client.api.AbstractWebServiceDiscoverer   jalview.ws2.client.api.AbstractWebServiceDiscoverer 0.07547177.5%
jalview.datamodel.Annotation   jalview.datamodel.Annotation 0.0714285757.1%
jalview.io.AppletFormatAdapter   jalview.io.AppletFormatAdapter 0.065217396.5%
com.stevesoft.pat.RegOpt   com.stevesoft.pat.RegOpt 0.06474826.5%
jalview.datamodel.PDBEntry   jalview.datamodel.PDBEntry 0.056666675.7%
com.stevesoft.pat.FastBracket   com.stevesoft.pat.FastBracket 0.0538922145.4%
jalview.datamodel.Alignment   jalview.datamodel.Alignment 0.0437109734.4%
jalview.gui.WsParamSetManager   jalview.gui.WsParamSetManager 0.0429447854.3%
jalview.util.Platform   jalview.util.Platform 0.0346534663.5%
jalview.io.FileFormat   jalview.io.FileFormat 0.0275862072.8%
com.stevesoft.pat.Skip   com.stevesoft.pat.Skip 0.0270270282.7%
jalview.bin.Cache   jalview.bin.Cache 0.0216802172.2%
jalview.datamodel.HiddenColumnsCursor   jalview.datamodel.HiddenColumnsCursor 0.0156251.6%
jalview.datamodel.features.SequenceFeatures   jalview.datamodel.features.SequenceFeatures 0.0127388541.3%
jalview.gui.BlogReader   jalview.gui.BlogReader 0.0110497241.1%
jalview.datamodel.HiddenSequences   jalview.datamodel.HiddenSequences 0.009132420.9%
jalview.schemes.ResidueProperties   jalview.schemes.ResidueProperties 0.0087583720.9%
jalview.ws2.gui.WebServicesMenuManager   jalview.ws2.gui.WebServicesMenuManager 0.0081632650.8%
jalview.bin.Jalview   jalview.bin.Jalview 0.00564971750.6%
jalview.gui.Desktop   jalview.gui.Desktop 0.00389321470.4%
com.stevesoft.pat.CaseMgr   com.stevesoft.pat.CaseMgr 0.00278551530.3%
jalview.datamodel.HiddenColumns   jalview.datamodel.HiddenColumns 0.00235849060.2%
jalview.gui.AlignFrame   jalview.gui.AlignFrame 0.00187852220.2%