Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
LogarithmicParameter	12	24	13	0.00%	Show methods
LogarithmicParameter.Builder	14	13	12	0.00%	Show methods

Class LogarithmicParameter

Class LogarithmicParameter	Line # 12	Total Statements 24	Complexity 13	TOTAL Coverage 0.00%
getType() : ValueType   getType() : ValueType	9292	1.01	1.01	0.0 0.00%
getMin() : Number   getMin() : Number	9898	1.01	2.02	0.0 0.00%
getMax() : Number   getMax() : Number	104104	1.01	2.02	0.0 0.00%
getValidValue() : ValueConstrainI   getValidValue() : ValueConstrainI	8686	1.01	1.01	0.0 0.00%
newBuilder() : Builder   newBuilder() : Builder	112112	1.01	1.01	0.0 0.00%
LogarithmicParameter(Builder)   LogarithmicParameter(Builder)	117117	6.06	2.02	0.0 0.00%
LogarithmicParameter(LogarithmicParameter)   LogarithmicParameter(LogarithmicParameter)	128128	4.04	1.01	0.0 0.00%
LogarithmicParameter(String,String,boolean,Double,double,double)   LogarithmicParameter(String,String,boolean,Double,double,double)	136136	4.04	1.01	0.0 0.00%
LogarithmicParameter(String,String,boolean,Double,double,double,double)   LogarithmicParameter(String,String,boolean,Double,double,double,double)	146146	4.04	1.01	0.0 0.00%
copy() : LogarithmicParameter   copy() : LogarithmicParameter	157157	1.01	1.01	0.0 0.00%

 

Class LogarithmicParameter.Builder

Class LogarithmicParameter.Builder	Line # 14	Total Statements 13	Complexity 12	TOTAL Coverage 0.00%
setValue(String) : void   setValue(String) : void	2525	1.01	1.01	0.0 0.00%
setValue(Double) : void   setValue(Double) : void	3131	3.03	2.02	0.0 0.00%
setDefaultValue(String) : void   setDefaultValue(String) : void	4343	1.01	1.01	0.0 0.00%
setDefaultValue(Double) : void   setDefaultValue(Double) : void	4949	3.03	2.02	0.0 0.00%
setMin(Double) : void   setMin(Double) : void	5757	1.01	2.02	0.0 0.00%
setMax(Double) : void   setMax(Double) : void	6262	1.01	2.02	0.0 0.00%
setBounds(Double,Double) : void   setBounds(Double,Double) : void	6767	2.02	1.01	0.0 0.00%
build() : LogarithmicParameter   build() : LogarithmicParameter	7373	1.01	1.01	0.0 0.00%

 

Contributing tests

Source view

1		package jalview.ws.params.simple;
2
3		import jalview.ws.params.ParameterI;
4		import jalview.ws.params.ValueConstrainI;
5
6		/**
7		* A model for a numeric-valued parameter which should be displayed using a
8		* logarithmic scale
9		*
10		* @author TZVanaalten
11		*/
		0% Uncovered Elements: 40 (40) Complexity: 13 Complexity Density: 0.54
12		public class LogarithmicParameter extends Option implements ParameterI
13		{
		0% Uncovered Elements: 29 (29) Complexity: 12 Complexity Density: 0.92
14		public static class Builder extends Option.Builder
15		{
16		// setting them the opposite way disables limits until both are set.
17		protected double min = Double.POSITIVE_INFINITY;
18
19		protected double max = Double.NEGATIVE_INFINITY;
20
21		/**
22		* Setting string on double parameter is not allowed, use
23		* {@link #setValue(Double)} instead.
24		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
25	0	@Override...
26		public void setValue(String value)
27		{
28	0	throw new UnsupportedOperationException();
29		}
30
		0% Uncovered Elements: 5 (5) Complexity: 2 Complexity Density: 0.67
31	0	public void setValue(Double value)...
32		{
33	0	if (value != null)
34	0	super.setValue(value.toString());
35		else
36	0	super.setValue(null);
37		}
38
39		/**
40		* Setting string on double parameter is not allowed, use
41		* {@link #setDefaultValue(Double)} instead.
42		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
43	0	@Override...
44		public void setDefaultValue(String defaultValue)
45		{
46	0	throw new UnsupportedOperationException();
47		}
48
		0% Uncovered Elements: 5 (5) Complexity: 2 Complexity Density: 0.67
49	0	public void setDefaultValue(Double defaultValue)...
50		{
51	0	if (defaultValue != null)
52	0	super.setDefaultValue(defaultValue.toString());
53		else
54	0	super.setDefaultValue(null);
55		}
56
		0% Uncovered Elements: 3 (3) Complexity: 2 Complexity Density: 2
57	0	public void setMin(Double min)...
58		{
59	0	this.min = min != null ? min : Double.POSITIVE_INFINITY;
60		}
61
		0% Uncovered Elements: 3 (3) Complexity: 2 Complexity Density: 2
62	0	public void setMax(Double max)...
63		{
64	0	this.max = max != null ? max : Double.NEGATIVE_INFINITY;
65		}
66
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
67	0	public void setBounds(Double min, Double max)...
68		{
69	0	setMin(min);
70	0	setMax(max);
71		}
72
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
73	0	@Override...
74		public LogarithmicParameter build()
75		{
76	0	return new LogarithmicParameter(this);
77		}
78		}
79
80		final double defval;
81
82		final double min;
83
84		final double max;
85
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
86	0	@Override...
87		public ValueConstrainI getValidValue()
88		{
89	0	return new ValueConstrainI()
90		{
91
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
92	0	@Override...
93		public ValueType getType()
94		{
95	0	return ValueType.Double;
96		}
97
		0% Uncovered Elements: 3 (3) Complexity: 2 Complexity Density: 2
98	0	@Override...
99		public Number getMin()
100		{
101	0	return min < max ? min : null;
102		}
103
		0% Uncovered Elements: 3 (3) Complexity: 2 Complexity Density: 2
104	0	@Override...
105		public Number getMax()
106		{
107	0	return min < max ? max : null;
108		}
109		};
110		}
111
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
112	0	public static Builder newBuilder()...
113		{
114	0	return new Builder();
115		}
116
		0% Uncovered Elements: 8 (8) Complexity: 2 Complexity Density: 0.33
117	0	public LogarithmicParameter(Builder builder)...
118		{
119	0	super(builder);
120	0	this.min = builder.min;
121	0	this.max = builder.max;
122	0	if (defvalue != null)
123	0	defval = Double.parseDouble(defvalue);
124		else
125	0	defval = 0.0;
126		}
127
		0% Uncovered Elements: 4 (4) Complexity: 1 Complexity Density: 0.25
128	0	public LogarithmicParameter(LogarithmicParameter parm)...
129		{
130	0	super(parm);
131	0	max = parm.max;
132	0	min = parm.min;
133	0	defval = 0D;
134		}
135
		0% Uncovered Elements: 4 (4) Complexity: 1 Complexity Density: 0.25
136	0	public LogarithmicParameter(String name, String description,...
137		boolean required, Double defValue, double min, double max)
138		{
139	0	super(name, description, required, String.valueOf(defValue), null, null,
140		null);
141	0	defval = defValue;
142	0	this.min = min;
143	0	this.max = max;
144		}
145
		0% Uncovered Elements: 4 (4) Complexity: 1 Complexity Density: 0.25
146	0	public LogarithmicParameter(String name, String description,...
147		boolean required, Double defValue, double value, double min,
148		double max)
149		{
150	0	super(name, description, required, String.valueOf(defValue),
151		String.valueOf(value), null, null);
152	0	defval = defValue;
153	0	this.min = min;
154	0	this.max = max;
155		}
156
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
157	0	@Override...
158		public LogarithmicParameter copy()
159		{
160	0	return new LogarithmicParameter(this);
161		}
162		}