Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
HMMNodeTest	15	6	2	1.0100%	Show methods

Class HMMNodeTest

Class HMMNodeTest	Line # 15	Total Statements 6	Complexity 2	TOTAL Coverage 1.0100%
setUp() : void   setUp() : void	1919	2.02	1.01	1.0 1.0100%
testGetMaxMatchEmissionIdex() : void   testGetMaxMatchEmissionIdex() : void	3030	4.04	1.01	1.0 1.0100%

 

Contributing tests

Contributing tests

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	Test contribution	Test	Result	Actions
	0.625	jalview.datamodel.HMMNodeTest.testGetMaxMatchEmissionIdexjalview.datamodel.HMMNodeTest.testGetMaxMatchEmissionIdex	1PASS

 

Source view

1		package jalview.datamodel;
2
3		import static org.testng.Assert.assertEquals;
4
5		import jalview.io.DataSourceType;
6		import jalview.io.FileParse;
7		import jalview.io.HMMFile;
8
9		import java.io.IOException;
10		import java.net.MalformedURLException;
11
12		import org.testng.annotations.BeforeClass;
13		import org.testng.annotations.Test;
14
		100% Uncovered Elements: 0 (8) Complexity: 2 Complexity Density: 0.33
15		public class HMMNodeTest
16		{
17		private HiddenMarkovModel hmm;
18
		100% Uncovered Elements: 0 (2) Complexity: 1 Complexity Density: 0.5
19	1	@BeforeClass(alwaysRun = true)...
20		public void setUp() throws MalformedURLException, IOException
21		{
22		/*
23		* load hmm model of a Kinase domain to a HiddenMarkovModel
24		*/
25	1	HMMFile file = new HMMFile(new FileParse(
26		"test/jalview/io/test_PKinase_hmm.txt", DataSourceType.FILE));
27	1	hmm = file.getHMM();
28		}
29
		100% Uncovered Elements: 0 (4) Complexity: 1 Complexity Density: 0.25 1PASS
30	1	@Test(groups="Functional")...
31		public void testGetMaxMatchEmissionIdex()
32		{
33	1	assertEquals(hmm.getAlphabetType(), "amino");
34	1	String symbols = hmm.getSymbols();
35
36	1	assertEquals(hmm.getNode(1).getMaxMatchEmissionIndex(),
37		symbols.indexOf('Y'));
38
39	1	assertEquals(hmm.getNode(17).getMaxMatchEmissionIndex(),
40		symbols.indexOf('K'));
41		}
42		}