Package	Files	Average Method Complexity	TOTAL Coverage
jalview.util jalview.util	48.0 48	3.525641 3.53	0.5235923 0.523592352.4%

Class	Methods	Average Method Complexity	TOTAL Coverage
AWTConsole AWTConsole	7.0 7	4.142857 4.14	0.0 0.00%
ArgParserUtils.BaseInfo ArgParserUtils.BaseInfo	3.0 3	1.3333334 1.33	0.0 0.00%
BrowserLauncher BrowserLauncher	6.0 6	2.5 2.5	0.0 0.00%
DBRefUtils.DbRefComp DBRefUtils.DbRefComp	1.0 1	1.0 1	0.0 0.00%
GroupUrlLink GroupUrlLink	24.0 24	4.5416665 4.54	0.0 0.00%
GroupUrlLink.UrlStringTooLongException GroupUrlLink.UrlStringTooLongException	2.0 2	1.0 1	0.0 0.00%
HMMProbabilityDistributionAnalyser HMMProbabilityDistributionAnalyser	30.0 30	3.4333334 3.43	0.0 0.00%
Pair Pair	7.0 7	1.4285715 1.43	0.0 0.00%
ProbabilityAnalyserKickstarter ProbabilityAnalyserKickstarter	1.0 1	26.0 26	0.0 0.00%
ShortcutKeyMaskExWrapper11 ShortcutKeyMaskExWrapper11	3.0 3	1.6666666 1.67	0.0 0.00%
ShortcutKeyMaskExWrapper8 ShortcutKeyMaskExWrapper8	3.0 3	1.6666666 1.67	0.0 0.00%
TableSorter TableSorter	29.0 29	1.7241379 1.72	0.0 0.00%
TableSorter.Arrow TableSorter.Arrow	4.0 4	2.25 2.25	0.0 0.00%
TableSorter.Directive TableSorter.Directive	1.0 1	1.0 1	0.0 0.00%
TableSorter.MouseHandler TableSorter.MouseHandler	1.0 1	4.0 4	0.0 0.00%
TableSorter.Row TableSorter.Row	2.0 2	4.5 4.5	0.0 0.00%
TableSorter.SortableHeaderRenderer TableSorter.SortableHeaderRenderer	2.0 2	1.5 1.5	0.0 0.00%
TableSorter.TableModelHandler TableSorter.TableModelHandler	1.0 1	7.0 7	0.0 0.00%
DigestUtils DigestUtils	4.0 4	5.0 5	0.07446808 0.074468087.4%
LaunchUtils LaunchUtils	19.0 19	6.0 6	0.27518427 0.2751842727.5%
ErrorLog ErrorLog	7.0 7	4.0 4	0.4117647 0.411764741.2%
Platform.PlatformDependentValue Platform.PlatformDependentValue	7.0 7	2.4285715 2.43	0.42222223 0.4222222342.2%
Platform Platform	57.0 57	2.7017543 2.7	0.45343137 0.4534313745.3%
HttpUtils HttpUtils	14.0 14	4.071429 4.07	0.46464646 0.4646464646.5%
ArgParserUtils ArgParserUtils	4.0 4	4.0 4	0.5180723 0.518072351.8%
Format Format	22.0 22	6.7727275 6.77	0.55693585 0.5569358555.7%
Log4j Log4j	24.0 24	1.25 1.25	0.6090909 0.609090960.9%
DBRefUtils DBRefUtils	22.0 22	7.090909 7.09	0.6130952 0.613095261.3%
ChannelProperties ChannelProperties	13.0 13	2.8461537 2.85	0.6137931 0.613793161.4%
MapList MapList	43.0 43	3.7441862 3.74	0.6288 0.628862.9%
ImageMaker.TYPE ImageMaker.TYPE	4.0 4	1.0 1	0.6363636 0.636363663.6%
FileUtils FileUtils	29.0 29	3.1724138 3.17	0.6755952 0.675595267.6%
MapUtils MapUtils	3.0 3	2.6666667 2.67	0.73913044 0.7391304473.9%
ImageMaker ImageMaker	9.0 9	4.6666665 4.67	0.74418604 0.7441860474.4%
ShiftList ShiftList	8.0 8	3.25 3.25	0.7468355 0.746835574.7%
ColorUtils ColorUtils	20.0 20	4.45 4.45	0.75414366 0.7541436675.4%
StringUtils StringUtils	24.0 24	4.5833335 4.58	0.79096043 0.7909604379.1%
Comparison Comparison	19.0 19	4.368421 4.37	0.79527557 0.7952755779.5%
UrlConstants UrlConstants	2.0 2	1.0 1	0.8 0.880%
LinkedIdentityHashSet LinkedIdentityHashSet	8.0 8	1.125 1.12	0.8181818 0.818181881.8%
MappingUtils MappingUtils	23.0 23	5.652174 5.65	0.8241309 0.824130982.4%
SparseCount SparseCount	10.0 10	1.8 1.8	0.84 0.8484%
ArrayUtils ArrayUtils	4.0 4	2.75 2.75	0.84615386 0.8461538684.6%
UrlLink UrlLink	26.0 26	3.2692308 3.27	0.8636364 0.863636486.4%
QuickSort QuickSort	22.0 22	2.5454545 2.55	0.89320385 0.8932038589.3%
MessageManager MessageManager	7.0 7	1.8571428 1.86	0.9047619 0.904761990.5%
JSONUtils JSONUtils	4.0 4	2.0 2	0.90909094 0.9090909490.9%
UserAgent UserAgent	2.0 2	3.0 3	0.9285714 0.928571492.9%
ParseHtmlBodyAndLinks ParseHtmlBodyAndLinks	7.0 7	3.142857 3.14	0.942029 0.94202994.2%
DnaUtils DnaUtils	3.0 3	4.0 4	0.9607843 0.960784396.1%
CaseInsensitiveString CaseInsensitiveString	4.0 4	2.0 2	1.0 1.0100%
Constants Constants	3.0 3	1.0 1	1.0 1.0100%
IntRangeComparator IntRangeComparator	2.0 2	1.5 1.5	1.0 1.0100%
LinkedIdentityHashSet.IdentityWrapper LinkedIdentityHashSet.IdentityWrapper	3.0 3	1.0 1	1.0 1.0100%
MathUtils MathUtils	2.0 2	1.5 1.5	1.0 1.0100%
QuickSort.DoubleComparator QuickSort.DoubleComparator	2.0 2	1.5 1.5	1.0 1.0100%
QuickSort.ExternalComparator QuickSort.ExternalComparator	2.0 2	1.5 1.5	1.0 1.0100%
QuickSort.FloatComparator QuickSort.FloatComparator	2.0 2	1.5 1.5	1.0 1.0100%
QuickSort.IntComparator QuickSort.IntComparator	2.0 2	1.5 1.5	1.0 1.0100%
ReverseListIterator ReverseListIterator	4.0 4	1.0 1	1.0 1.0100%
SetUtils SetUtils	1.0 1	7.0 7	1.0 1.0100%