|
jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
|
0.7727272577.3%
|
|
|
jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
|
0.7142857371.4%
|
|
|
jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping
jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping
|
0.4910714349.1%
|
|
|
jalview.datamodel.RangeIterator
jalview.datamodel.RangeIterator
|
0.4594594545.9%
|
|
|
jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
0.4285714342.9%
|
|
|
jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
|
0.37537.5%
|
|
|
jalview.io.FastaFile
jalview.io.FastaFile
|
0.3603603536%
|
|
|
jalview.io.AlignFile
jalview.io.AlignFile
|
0.3513513535.1%
|
|
|
jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
|
0.3221649532.2%
|
|
|
jalview.ws.api.UIinfo
jalview.ws.api.UIinfo
|
0.313725531.4%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.3110236231.1%
|
|
|
jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
|
0.2435897424.4%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.2380952423.8%
|
|
|
jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.2275862122.8%
|
|
|
jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.2240184722.4%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.2108786621.1%
|
|
|
jalview.ws.rest.InputType
jalview.ws.rest.InputType
|
0.2056074720.6%
|
|
|
jalview.datamodel.SearchResults.Match
jalview.datamodel.SearchResults.Match
|
0.1818181918.2%
|
|
|
jalview.util.MapList
jalview.util.MapList
|
0.180818.1%
|
|
|
jalview.log.JalviewAppender
jalview.log.JalviewAppender
|
0.1666666716.7%
|
|
|
jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
|
0.1666666716.7%
|
|
|
jalview.io.FormatAdapter
jalview.io.FormatAdapter
|
0.1515%
|
|
|
jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
|
0.1466666614.7%
|
|
|
jalview.util.MappingUtils
jalview.util.MappingUtils
|
0.1431492914.3%
|
|
|
jalview.log.JLogger
jalview.log.JLogger
|
0.1428571514.3%
|
|
|
jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
|
0.1413043414.1%
|
|
|
jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.1401869214%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.1357340713.6%
|
|
|
jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
|
|
|
jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
|
0.1111111111.1%
|
|
|
jalview.util.StringUtils
jalview.util.StringUtils
|
0.1101694911%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.1070472810.7%
|
|
|
jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
|
0.10679611610.7%
|
|
|
jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
|
|
|
jalview.ws2.api.WebService
jalview.ws2.api.WebService
|
0.110%
|
|
|
jalview.ws.WSClient
jalview.ws.WSClient
|
0.098039229.8%
|
|
|
jalview.bin.Console
jalview.bin.Console
|
0.089622649%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.0878688548.8%
|
|
|
jalview.datamodel.AlignedCodonFrame
jalview.datamodel.AlignedCodonFrame
|
0.0819112668.2%
|
|
|
jalview.io.FileFormats
jalview.io.FileFormats
|
0.088%
|
|
|
jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
|
0.0789473657.9%
|
|
|
jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
|
0.065217396.5%
|
|
|
jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
|
0.061224496.1%
|
|
|
jalview.datamodel.SearchResults
jalview.datamodel.SearchResults
|
0.0576923085.8%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.056271985.6%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.0551724145.5%
|
|
|
jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.0432900454.3%
|
|
|
jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.0426829274.3%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.033875343.4%
|
|
|
jalview.analysis.AlignmentAnnotationUtils
jalview.analysis.AlignmentAnnotationUtils
|
0.0296610173%
|
|
|
jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
|
0.0268456382.7%
|
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.0240549842.4%
|
|
|
jalview.ws.api.ServiceWithParameters
jalview.ws.api.ServiceWithParameters
|
0.0208333342.1%
|
|
|
jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
|
0.019867552%
|
|
|
jalview.util.ColorUtils
jalview.util.ColorUtils
|
0.0193370171.9%
|
|
|
jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
|
0.0188679251.9%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.016539441.7%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.0141509441.4%
|
|
|
jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.0128205131.3%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.01275510251.3%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.0127388541.3%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.0122549021.2%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0111329411.1%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.0097056981%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.009132420.9%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.0056588520.6%
|
|
|
jalview.ws.jws2.PreferredServiceRegistry
jalview.ws.jws2.PreferredServiceRegistry
|
0.0052910050.5%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.00167224080.2%
|
|
