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Coverage Report

  1. Project Clover database Wed Dec 3 2025 17:03:17 GMT

Package jalview.io

 

Code metrics

3,926
8,190
852
73
63
28,185
19,375
3,407
0.42
9.61
11.67
4
Package
jalview.io jalview.io 63.0 63 3.9988263 4 0.5950802
0.595080259.5%
 
Class
AlignmentProperties AlignmentProperties 5.0 5 3.2 3.2 0.0
0.00%
CountReader CountReader 1.0 1 5.0 5 0.0
0.00%
DBRefFile DBRefFile 2.0 2 1.0 1 0.0
0.00%
HtmlFile HtmlFile 15.0 15 1.4 1.4 0.0
0.00%
InputStreamParser InputStreamParser 2.0 2 1.0 1 0.0
0.00%
JSONFile.JSONExportSettings JSONFile.JSONExportSettings 10.0 10 1.0 1 0.0
0.00%
ModellerDescription.resCode ModellerDescription.resCode 2.0 2 1.0 1 0.0
0.00%
PContactPredictionFile PContactPredictionFile 8.0 8 1.5 1.5 0.0
0.00%
SimpleBlastFile SimpleBlastFile 6.0 6 8.0 8 0.0
0.00%
VamsasAppDatastore VamsasAppDatastore 53.0 53 7.056604 7.06 0.0
0.00%
WSWUBlastClient WSWUBlastClient 3.0 3 5.0 5 0.0
0.00%
WSWUBlastClient.BlastThread WSWUBlastClient.BlastThread 3.0 3 2.3333333 2.33 0.0
0.00%
WSWUBlastClient.ImageTwirler WSWUBlastClient.ImageTwirler 2.0 2 3.5 3.5 0.0
0.00%
ModellerDescription ModellerDescription 15.0 15 4.6 4.6 0.14285715
0.1428571514.3%
AMSAFile AMSAFile 4.0 4 3.5 3.5 0.18867925
0.1886792518.9%
AppletFormatAdapter AppletFormatAdapter 19.0 19 4.5263157 4.53 0.310559
0.31055931.1%
JalviewFileChooser JalviewFileChooser 31.0 31 3.548387 3.55 0.31062672
0.3106267231.1%
FormatAdapter FormatAdapter 17.0 17 1.7058823 1.71 0.46
0.4646%
JPredFile JPredFile 11.0 11 4.0 4 0.5168539
0.516853951.7%
HTMLOutput HTMLOutput 12.0 12 2.3333333 2.33 0.53
0.5353%
FileFormat FileFormat 67.0 67 1.0149254 1.01 0.5586207
0.558620755.9%
BioJsHTMLOutput BioJsHTMLOutput 14.0 14 2.5 2.5 0.576
0.57657.6%
FileParse FileParse 34.0 34 2.9705882 2.97 0.57894737
0.5789473757.9%
NewickFile NewickFile 28.0 28 4.571429 4.57 0.63729507
0.6372950763.7%
FastaFile FastaFile 9.0 9 3.3333333 3.33 0.6396396
0.639639664%
FileLoader FileLoader 22.0 22 4.090909 4.09 0.64329267
0.6432926764.3%
JalviewFileView JalviewFileView 6.0 6 3.3333333 3.33 0.6506024
0.650602465.1%
BackupFilenameParts BackupFilenameParts 8.0 8 3.0 3 0.6621622
0.662162266.2%
BackupFiles BackupFiles 34.0 34 3.4117646 3.41 0.666
0.66666.6%
PIRFile PIRFile 5.0 5 4.8 4.8 0.6759259
0.675925967.6%
RnamlFile RnamlFile 9.0 9 2.7777777 2.78 0.6818182
0.681818268.2%
BSMLFile BSMLFile 7.0 7 2.5714285 2.57 0.6847826
0.684782668.5%
JalviewFileFilter JalviewFileFilter 15.0 15 2.4666667 2.47 0.712963
0.71296371.3%
PDBFeatureSettings PDBFeatureSettings 4.0 4 2.25 2.25 0.71428573
0.7142857371.4%
FeaturesFile FeaturesFile 29.0 29 5.6551723 5.66 0.7195846
0.719584672%
TCoffeeScoreFile TCoffeeScoreFile 14.0 14 5.0 5 0.71984434
0.7198443472%
HtmlSvgOutput HtmlSvgOutput 9.0 9 2.4444444 2.44 0.72
0.7272%
A3mFile A3mFile 5.0 5 1.2 1.2 0.73333335
0.7333333573.3%
SequenceAnnotationReport SequenceAnnotationReport 13.0 13 7.6923075 7.69 0.73595506
0.7359550673.6%
StructureFile StructureFile 41.0 41 1.7073171 1.71 0.74883723
0.7488372374.9%
BLCFile BLCFile 6.0 6 5.6666665 5.67 0.7557252
0.755725275.6%
Jalview2xmlBase Jalview2xmlBase 5.0 5 2.2 2.2 0.76666665
0.7666666576.7%
StockholmFile StockholmFile 18.0 18 10.666667 10.67 0.77487564
0.7748756477.5%
IdentifyFile IdentifyFile 12.0 12 9.083333 9.08 0.778098
0.77809877.8%
AnnotationFile AnnotationFile 31.0 31 10.83871 10.84 0.78785604
0.7878560478.8%
PhylipFile PhylipFile 7.0 7 3.7142856 3.71 0.8108108
0.810810881.1%
ClustalFile ClustalFile 6.0 6 6.1666665 6.17 0.821192
0.82119282.1%
EMBLLikeFlatFile EMBLLikeFlatFile 15.0 15 5.4 5.4 0.83286905
0.8328690583.3%
JSONFile JSONFile 25.0 25 4.4 4.4 0.8329718
0.832971883.3%
TCoffeeScoreFile.Header TCoffeeScoreFile.Header 2.0 2 1.5 1.5 0.8333333
0.833333383.3%
PfamFile PfamFile 6.0 6 4.1666665 4.17 0.83838385
0.8383838583.8%
AlignFile AlignFile 33.0 33 1.5757576 1.58 0.8445946
0.844594684.5%
JalviewFileChooser.recentlyOpenedCellRenderer JalviewFileChooser.recentlyOpenedCellRenderer 1.0 1 10.0 10 0.8695652
0.869565287%
GenBankFile GenBankFile 6.0 6 3.6666667 3.67 0.87341774
0.8734177487.3%
EmblFlatFile EmblFlatFile 6.0 6 4.0 4 0.8924731
0.892473189.2%
MSFfile MSFfile 6.0 6 8.166667 8.17 0.8967136
0.896713689.7%
BackupFilesPresetEntry BackupFilesPresetEntry 6.0 6 2.3333333 2.33 0.9117647
0.911764791.2%
PileUpfile PileUpfile 4.0 4 5.0 5 0.9222222
0.922222292.2%
JnetAnnotationMaker JnetAnnotationMaker 2.0 2 21.0 21 0.92741936
0.9274193692.7%
BackupFilenameFilter BackupFilenameFilter 2.0 2 2.0 2 0.9285714
0.928571492.9%
JalviewFileChooser.RecentlyOpened JalviewFileChooser.RecentlyOpened 3.0 3 1.6666666 1.67 0.93333334
0.9333333493.3%
HMMFile HMMFile 27.0 27 2.3703704 2.37 0.93448275
0.9344827593.4%
ScoreMatrixFile ScoreMatrixFile 9.0 9 5.7777777 5.78 0.959596
0.95959696%
FileFormats FileFormats 11.0 11 1.6363636 1.64 0.98
0.9898%
AnnotationFile.ViewDef AnnotationFile.ViewDef 1.0 1 1.0 1 1.0
1.0100%
DataSourceType DataSourceType 2.0 2 1.0 1 1.0
1.0100%
FileFormatException FileFormatException 1.0 1 1.0 1 1.0
1.0100%
IntKeyStringValueEntry IntKeyStringValueEntry 2.0 2 1.0 1 1.0
1.0100%
TCoffeeScoreFile.Block TCoffeeScoreFile.Block 3.0 3 1.0 1 1.0
1.0100%
This package contains 4 empty classes or interfaces which are not listed.
  • Report generated by OpenClover v 4.4.1 on Wed Dec 3 2025 17:13:21 GMT using coverage data from Wed Dec 3 2025 17:13:06 GMT.
  • OpenClover is free and open-source software.