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jalview.ws2.actions.hmmer.PhmmerAction.Builder
jalview.ws2.actions.hmmer.PhmmerAction.Builder
|
1.0100%
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jalview.ws.params.simple.StringParameter.Builder
jalview.ws.params.simple.StringParameter.Builder
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1.0100%
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jalview.renderer.ScaleRenderer.ScaleMark
jalview.renderer.ScaleRenderer.ScaleMark
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1.0100%
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jalview.ws2.actions.alignment.AlignmentAction.Builder
jalview.ws2.actions.alignment.AlignmentAction.Builder
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1.0100%
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jalview.ws2.actions.secstructpred.SecStructPredAction.Builder
jalview.ws2.actions.secstructpred.SecStructPredAction.Builder
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1.0100%
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jalview.ws2.api.WebService.Builder
jalview.ws2.api.WebService.Builder
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1.0100%
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jalview.ws.params.ParamDatastoreI
jalview.ws.params.ParamDatastoreI
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1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
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1.0100%
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jalview.ws2.actions.annotation.AnnotationAction.Builder
jalview.ws2.actions.annotation.AnnotationAction.Builder
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1.0100%
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jalview.ws.params.simple.BooleanOption.Builder
jalview.ws.params.simple.BooleanOption.Builder
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0.8571428785.7%
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jalview.util.QuickSort.IntComparator
jalview.util.QuickSort.IntComparator
|
0.8571428785.7%
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jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
|
0.85234985.2%
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jalview.ws.params.simple.Option.Builder
jalview.ws.params.simple.Option.Builder
|
0.880%
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jalview.ws2.api.WebService
jalview.ws2.api.WebService
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0.880%
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jalview.ws2.actions.BaseAction
jalview.ws2.actions.BaseAction
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0.771428677.1%
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jalview.ws2.client.jpred4.JPred4WSDiscoverer
jalview.ws2.client.jpred4.JPred4WSDiscoverer
|
0.738095273.8%
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jalview.ws2.client.slivka.SlivkaParamStoreFactory
jalview.ws2.client.slivka.SlivkaParamStoreFactory
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0.7028985670.3%
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jalview.ws.params.simple.DoubleParameter.Builder
jalview.ws.params.simple.DoubleParameter.Builder
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0.655172465.5%
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jalview.ws.params.simple.IntegerParameter.Builder
jalview.ws.params.simple.IntegerParameter.Builder
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0.655172465.5%
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jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
|
0.6470588464.7%
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jalview.ws2.actions.BaseAction.Builder
jalview.ws2.actions.BaseAction.Builder
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0.6190476461.9%
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jalview.bin.HiDPISetting
jalview.bin.HiDPISetting
|
0.6140350761.4%
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jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
|
0.612244961.2%
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jalview.ws2.actions.alignment.AlignmentAction
jalview.ws2.actions.alignment.AlignmentAction
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0.660%
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jalview.util.ParseHtmlBodyAndLinks
jalview.util.ParseHtmlBodyAndLinks
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0.594202959.4%
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jalview.renderer.ScaleRenderer
jalview.renderer.ScaleRenderer
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0.5656%
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jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
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0.5142857451.4%
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jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
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0.4579439245.8%
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jalview.ws2.actions.annotation.AnnotationAction
jalview.ws2.actions.annotation.AnnotationAction
|
0.4444444544.4%
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jalview.ws2.actions.secstructpred.SecStructPredAction
jalview.ws2.actions.secstructpred.SecStructPredAction
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0.4285714342.9%
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jalview.ws.params.simple.BooleanOption
jalview.ws.params.simple.BooleanOption
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0.4242424442.4%
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org.json.JSONTokener
org.json.JSONTokener
|
0.4132841241.3%
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
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0.4038461440.4%
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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0.440%
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jalview.ws.api.UIinfo
jalview.ws.api.UIinfo
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0.3921568739.2%
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
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0.388888938.9%
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jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
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0.3867924538.7%
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jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
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0.37537.5%
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jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
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0.37537.5%
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jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
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0.3333333433.3%
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jalview.ws.jws2.PreferredServiceRegistry
jalview.ws.jws2.PreferredServiceRegistry
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0.3280423332.8%
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jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
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0.3221649532.2%
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jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
|
0.3095238231%
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jalview.ws2.actions.hmmer.PhmmerAction
jalview.ws2.actions.hmmer.PhmmerAction
|
0.2941176629.4%
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jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
|
0.2916666629.2%
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jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
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0.285714328.6%
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
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0.2783143227.8%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.2620689626.2%
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
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0.2619047826.2%
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org.json.JSONObject.Null
org.json.JSONObject.Null
|
0.2525%
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
|
0.2525%
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jalview.renderer.AnnotationRendererFactory
jalview.renderer.AnnotationRendererFactory
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0.2525%
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jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
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0.2525%
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
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0.2483443824.8%
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jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
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0.2435897424.4%
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jalview.util.MessageManager
jalview.util.MessageManager
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0.2380952423.8%
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
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0.235880423.6%
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jalview.ws.WSClient
jalview.ws.WSClient
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0.2352941223.5%
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jalview.ws.params.simple.Option
jalview.ws.params.simple.Option
|
0.2333333323.3%
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jalview.ws.params.simple.IntegerParameter
jalview.ws.params.simple.IntegerParameter
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0.2142857221.4%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
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0.2056074720.6%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
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0.2039215720.4%
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jalview.datamodel.Profiles
jalview.datamodel.Profiles
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0.220%
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jalview.ws.params.simple.DoubleParameter
jalview.ws.params.simple.DoubleParameter
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0.1956521719.6%
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jalview.ws.params.simple.StringParameter
jalview.ws.params.simple.StringParameter
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0.190476219%
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jalview.ws.api.ServiceWithParameters
jalview.ws.api.ServiceWithParameters
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0.187518.8%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
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0.1842105218.4%
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
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0.1829268318.3%
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jalview.util.QuickSort
jalview.util.QuickSort
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0.1779935217.8%
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
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0.1643700716.4%
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
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0.1616%
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jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
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0.1466666614.7%
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jalview.log.JLogger
jalview.log.JLogger
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0.1428571514.3%
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jalview.bin.Console
jalview.bin.Console
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0.1415094314.2%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
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0.1351636813.5%
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org.json.JSONObject
org.json.JSONObject
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0.1322549913.2%
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jalview.ws2.client.jpred4.JPred4WSClient
jalview.ws2.client.jpred4.JPred4WSClient
|
0.1290322512.9%
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
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0.12408759412.4%
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jalview.workers.AlignCalcManager2
jalview.workers.AlignCalcManager2
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0.1232876712.3%
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
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0.1219512212.2%
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jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
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0.1159420311.6%
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jalview.ws2.params.SimpleParamDatastore
jalview.ws2.params.SimpleParamDatastore
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0.11428571511.4%
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jalview.gui.BlogReader
jalview.gui.BlogReader
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0.11325966611.3%
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jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
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0.10679611610.7%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
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0.10256410410.3%
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org.json.JSONArray
org.json.JSONArray
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0.1010638310.1%
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.096153859.6%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
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0.09523819.5%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.090395489%
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jalview.ws2.client.slivka.SlivkaAlignmentWSClient
jalview.ws2.client.slivka.SlivkaAlignmentWSClient
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0.086956528.7%
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
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0.086956528.7%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
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0.085832478.6%
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0848484868.5%
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.0833333368.3%
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jalview.io.FileFormats
jalview.io.FileFormats
|
0.088%
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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0.0789473657.9%
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jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
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0.076923087.7%
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jalview.workers.AlignCalcManager2.SimpleWorkerManager
jalview.workers.AlignCalcManager2.SimpleWorkerManager
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0.0714285757.1%
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jalview.datamodel.Profile
jalview.datamodel.Profile
|
0.065573776.6%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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0.063606566.4%
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
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0.0577777775.8%
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
|
0.0554649275.5%
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.0540540555.4%
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jalview.ws2.client.slivka.SlivkaAnnotationWSClient
jalview.ws2.client.slivka.SlivkaAnnotationWSClient
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0.055%
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jalview.bin.Cache
jalview.bin.Cache
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0.0487804864.9%
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
|
0.0444444464.4%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.0419536644.2%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
|
0.0416666684.2%
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jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
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0.0408163264.1%
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jalview.ws.jws2.Jws2ClientFactory
jalview.ws.jws2.Jws2ClientFactory
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0.044%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.037466553.7%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.0353773573.5%
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
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jalview.ws2.client.slivka.SlivkaWSClient
jalview.ws2.client.slivka.SlivkaWSClient
|
0.033%
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jalview.io.FileFormat
jalview.io.FileFormat
|
0.0275862072.8%
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.0254041572.5%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.0208333342.1%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.0186915881.9%
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.018264841.8%
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jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.015325671.5%
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jalview.datamodel.SearchResults
jalview.datamodel.SearchResults
|
0.0128205131.3%
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jalview.util.Platform
jalview.util.Platform
|
0.0122549021.2%
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jalview.ws2.client.ebi.ParamStores
jalview.ws2.client.ebi.ParamStores
|
0.0102040811%
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jalview.ws2.client.ebi.PhmmerWSClient
jalview.ws2.client.ebi.PhmmerWSClient
|
0.0101522841%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.0100418411%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.0093786630.9%
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jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.008968610.9%
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jalview.bin.Jalview
jalview.bin.Jalview
|
0.0088924820.9%
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jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
|
0.0082644620.8%
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jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
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jalview.util.Comparison
jalview.util.Comparison
|
0.0078740160.8%
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.00687285230.7%
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jalview.gui.Desktop
jalview.gui.Desktop
|
0.006131550.6%
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jalview.util.HttpUtils
jalview.util.HttpUtils
|
0.0050505050.5%
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