Coverage Report
Test testIdWidthChanges
| Test | ||||
|---|---|---|---|---|
| testIdWidthChanges | 3FAIL | 27 Nov 15:38:18 | 1.239 |
idWidth (221) is not narrower than 117 expected [true] but found [false]
java.lang.AssertionError: idWidth (221) is not narrower than 117 expected [true] but found [false] at org.testng.Assert.fail(Assert.java:94) at org.testng.Assert.failNotEquals(Assert.java:496) at org.testng.Assert.assertTrue(Assert.java:42) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:141) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:90) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:61) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:133) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:71) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74) |
| testIdWidthChanges | ||||
|---|---|---|---|---|
| com.stevesoft.pat.patInf com.stevesoft.pat.patInf | 1.0100% |
|
||
| jalview.io.DataSourceType jalview.io.DataSourceType | 1.0100% |
|
||
| jalview.renderer.ContactMapRenderer.Shading jalview.renderer.ContactMapRenderer.Shading | 1.0100% |
|
||
| jalview.renderer.ScaleRenderer.ScaleMark jalview.renderer.ScaleRenderer.ScaleMark | 1.0100% |
|
||
| jalview.ws.WSClient jalview.ws.WSClient | 1.0100% |
|
||
| jalview.datamodel.ResidueCount.SymbolCounts jalview.datamodel.ResidueCount.SymbolCounts | 1.0100% |
|
||
| jalview.structure.StructureImportSettings.TFType jalview.structure.StructureImportSettings.TFType | 1.0100% |
|
||
| jalview.jbgui.GAlignmentPanel jalview.jbgui.GAlignmentPanel | 0.9494% |
|
||
| jalview.analysis.Conservation jalview.analysis.Conservation | 0.881642588.2% |
|
||
| jalview.datamodel.Profiles jalview.datamodel.Profiles | 0.866666786.7% |
|
||
| com.stevesoft.pat.Rthings com.stevesoft.pat.Rthings | 0.8461538684.6% |
|
||
| mc_view.Residue mc_view.Residue | 0.8461538684.6% |
|
||
| jalview.api.AlignViewportI jalview.api.AlignViewportI | 0.833333383.3% |
|
||
| jalview.datamodel.ContactListImpl jalview.datamodel.ContactListImpl | 0.830508583.1% |
|
||
| jalview.datamodel.annotations.AlphaFoldAnnotationRowBuilder jalview.datamodel.annotations.AlphaFoldAnnotationRowBuilder | 0.8260869482.6% |
|
||
| jalview.util.LinkedIdentityHashSet jalview.util.LinkedIdentityHashSet | 0.7727272577.3% |
|
||
| jalview.ws.jws2.jabaws2.Jws2Instance jalview.ws.jws2.jabaws2.Jws2Instance | 0.7701149677% |
|
||
| jalview.ws.jws2.jabaws2.Jws2InstanceFactory jalview.ws.jws2.jabaws2.Jws2InstanceFactory | 0.7575% |
|
||
| jalview.schemes.ZappoColourScheme jalview.schemes.ZappoColourScheme | 0.7575% |
|
||
| jalview.fts.core.FTSDataColumnPreferences jalview.fts.core.FTSDataColumnPreferences | 0.745762774.6% |
|
||
| jalview.workers.ConsensusThread jalview.workers.ConsensusThread | 0.732673373.3% |
|
||
| jalview.workers.SecondaryStructureConsensusThread jalview.workers.SecondaryStructureConsensusThread | 0.715447171.5% |
|
||
| jalview.gui.FeatureRenderer jalview.gui.FeatureRenderer | 0.7142857371.4% |
|
||
| jalview.util.LinkedIdentityHashSet.IdentityWrapper jalview.util.LinkedIdentityHashSet.IdentityWrapper | 0.7142857371.4% |
|
||
| jalview.datamodel.ContactMapHolder jalview.datamodel.ContactMapHolder | 0.7115384371.2% |
|
||
| jalview.util.MapUtils jalview.util.MapUtils | 0.695652269.6% |
|
||
| jalview.renderer.ContactMapRenderer jalview.renderer.ContactMapRenderer | 0.693877669.4% |
|
||
| jalview.ws.SequenceFetcher jalview.ws.SequenceFetcher | 0.678571467.9% |
|
||
| jalview.datamodel.Profile jalview.datamodel.Profile | 0.672131167.2% |
|
||
| jalview.renderer.AnnotationRendererFactory jalview.renderer.AnnotationRendererFactory | 0.62562.5% |
|
||
| jalview.workers.AlignCalcManager jalview.workers.AlignCalcManager | 0.6071428760.7% |
|
||
| jalview.util.ParseHtmlBodyAndLinks jalview.util.ParseHtmlBodyAndLinks | 0.594202959.4% |
|
||
| jalview.jbgui.GStructureChooser.CustomComboSeparatorsRenderer jalview.jbgui.GStructureChooser.CustomComboSeparatorsRenderer | 0.583333358.3% |
|
||
| jalview.jbgui.GAlignFrame jalview.jbgui.GAlignFrame | 0.571820757.2% |
|
||
| jalview.workers.ConservationThread jalview.workers.ConservationThread | 0.568965556.9% |
|
||
| jalview.renderer.ScaleRenderer jalview.renderer.ScaleRenderer | 0.5656% |
|
||
| jalview.datamodel.ContactRange jalview.datamodel.ContactRange | 0.555555655.6% |
|
||
| jalview.gui.AssociatePdbFileWithSeq jalview.gui.AssociatePdbFileWithSeq | 0.5555% |
|
||
| mc_view.PDBChain mc_view.PDBChain | 0.5423280654.2% |
|
||
| jalview.ext.jmol.JmolParser jalview.ext.jmol.JmolParser | 0.529715853% |
|
||
| com.stevesoft.pat.StrPos com.stevesoft.pat.StrPos | 0.523255852.3% |
|
||
| jalview.ws.datamodel.alphafold.MappableContactMatrix jalview.ws.datamodel.alphafold.MappableContactMatrix | 0.5062761350.6% |
|
||
| jalview.jbgui.GStructureChooser jalview.jbgui.GStructureChooser | 0.5024752650.2% |
|
||
| jalview.gui.IdCanvas jalview.gui.IdCanvas | 0.501754450.2% |
|
||
| jalview.gui.JalviewChangeSupport jalview.gui.JalviewChangeSupport | 0.550% |
|
||
| jalview.viewmodel.ViewportProperties jalview.viewmodel.ViewportProperties | 0.550% |
|
||
| mc_view.Bond mc_view.Bond | 0.550% |
|
||
| jalview.datamodel.GroupSetHolder jalview.datamodel.GroupSetHolder | 0.550% |
|
||
| jalview.schemes.TaylorColourScheme jalview.schemes.TaylorColourScheme | 0.550% |
|
||
| jalview.schemes.FlowerColourScheme jalview.schemes.FlowerColourScheme | 0.550% |
|
||
| jalview.schemes.NucleotideAmbiguityColourScheme jalview.schemes.NucleotideAmbiguityColourScheme | 0.550% |
|
||
| jalview.schemes.PurinePyrimidineColourScheme jalview.schemes.PurinePyrimidineColourScheme | 0.550% |
|
||
| jalview.schemes.NucleotideColourScheme jalview.schemes.NucleotideColourScheme | 0.550% |
|
||
| jalview.schemes.BlossomColourScheme jalview.schemes.BlossomColourScheme | 0.550% |
|
||
| jalview.schemes.SunsetColourScheme jalview.schemes.SunsetColourScheme | 0.550% |
|
||
| jalview.schemes.OceanColourScheme jalview.schemes.OceanColourScheme | 0.550% |
|
||
| jalview.util.MessageManager jalview.util.MessageManager | 0.4761904847.6% |
|
||
| jalview.io.AlignFile jalview.io.AlignFile | 0.4589041245.9% |
|
||
| jalview.ws.jws2.MsaWSClient jalview.ws.jws2.MsaWSClient | 0.4429530244.3% |
|
||
| jalview.io.FileLoader jalview.io.FileLoader | 0.4444% |
|
||
| jalview.gui.ColourMenuHelper jalview.gui.ColourMenuHelper | 0.4322033843.2% |
|
||
| jalview.datamodel.HiddenCursorPosition jalview.datamodel.HiddenCursorPosition | 0.4285714342.9% |
|
||
| jalview.schemes.ResidueColourScheme jalview.schemes.ResidueColourScheme | 0.4285714342.9% |
|
||
| jalview.analysis.AlignSeq jalview.analysis.AlignSeq | 0.4285714342.9% |
|
||
| jalview.io.StructureFile jalview.io.StructureFile | 0.42790742.8% |
|
||
| jalview.datamodel.FloatContactMatrix jalview.datamodel.FloatContactMatrix | 0.4242% |
|
||
| jalview.util.ShortcutKeyMaskExWrapper11 jalview.util.ShortcutKeyMaskExWrapper11 | 0.4166666641.7% |
|
||
| jalview.datamodel.annotations.AnnotationRowBuilder jalview.datamodel.annotations.AnnotationRowBuilder | 0.4102564241% |
|
||
| jalview.ws.jws2.JabaPreset jalview.ws.jws2.JabaPreset | 0.409090940.9% |
|
||
| jalview.gui.SequenceRenderer jalview.gui.SequenceRenderer | 0.4086538640.9% |
|
||
| jalview.io.FileFormats jalview.io.FileFormats | 0.440% |
|
||
| jalview.ws.dbsources.EmblSource jalview.ws.dbsources.EmblSource | 0.440% |
|
||
| jalview.ws.jws2.Jws2Discoverer jalview.ws.jws2.Jws2Discoverer | 0.440% |
|
||
| jalview.schemes.HydrophobicColourScheme jalview.schemes.HydrophobicColourScheme | 0.440% |
|
||
| jalview.schemes.HelixColourScheme jalview.schemes.HelixColourScheme | 0.440% |
|
||
| jalview.schemes.TurnColourScheme jalview.schemes.TurnColourScheme | 0.440% |
|
||
| jalview.schemes.StrandColourScheme jalview.schemes.StrandColourScheme | 0.440% |
|
||
| jalview.schemes.BuriedColourScheme jalview.schemes.BuriedColourScheme | 0.440% |
|
||
| org.json.simple.parser.Yylex org.json.simple.parser.Yylex | 0.3980891739.8% |
|
||
| jalview.datamodel.ResidueCount jalview.datamodel.ResidueCount | 0.389090938.9% |
|
||
| jalview.log.JalviewAppender jalview.log.JalviewAppender | 0.388888938.9% |
|
||
| jalview.datamodel.AlignmentAnnotation jalview.datamodel.AlignmentAnnotation | 0.376811637.7% |
|
||
| jalview.renderer.ContactGeometry jalview.renderer.ContactGeometry | 0.37537.5% |
|
||
| jalview.viewmodel.ViewportRanges jalview.viewmodel.ViewportRanges | 0.3696369537% |
|
||
| jalview.util.Format jalview.util.Format | 0.3685300436.9% |
|
||
| jalview.viewmodel.styles.ViewStyle jalview.viewmodel.styles.ViewStyle | 0.3659420336.6% |
|
||
| jalview.ws.datamodel.alphafold.PAEContactMatrix jalview.ws.datamodel.alphafold.PAEContactMatrix | 0.3628318636.3% |
|
||
| jalview.io.FastaFile jalview.io.FastaFile | 0.3603603536% |
|
||
| jalview.renderer.ContactGeometry.contactInterval jalview.renderer.ContactGeometry.contactInterval | 0.3571428735.7% |
|
||
| jalview.renderer.AnnotationRenderer jalview.renderer.AnnotationRenderer | 0.3535714135.4% |
|
||
| jalview.jbgui.GStructureChooser.AssociateSeqPanel jalview.jbgui.GStructureChooser.AssociateSeqPanel | 0.352941235.3% |
|
||
| jalview.gui.AlignmentPanel jalview.gui.AlignmentPanel | 0.3521790235.2% |
|
||
| jalview.util.Comparison jalview.util.Comparison | 0.350393735% |
|
||
| jalview.analysis.AAFrequency jalview.analysis.AAFrequency | 0.348927934.9% |
|
||
| jalview.datamodel.Annotation jalview.datamodel.Annotation | 0.3428571534.3% |
|
||
| jalview.gui.IdwidthAdjuster jalview.gui.IdwidthAdjuster | 0.3289473732.9% |
|
||
| jalview.datamodel.Sequence jalview.datamodel.Sequence | 0.3267581532.7% |
|
||
| jalview.datamodel.PDBEntry jalview.datamodel.PDBEntry | 0.320284732% |
|
||
| jalview.ws.rest.RestServiceDescription jalview.ws.rest.RestServiceDescription | 0.31531.5% |
|
||
| com.stevesoft.pat.oneChar com.stevesoft.pat.oneChar | 0.3142857331.4% |
|
||
| jalview.gui.AlignViewport jalview.gui.AlignViewport | 0.3036529730.4% |
|
||
| jalview.ws.jws2.SequenceAnnotationWSClient jalview.ws.jws2.SequenceAnnotationWSClient | 0.2903225729% |
|
||
| jalview.ws.dbsources.EmblCdsSource jalview.ws.dbsources.EmblCdsSource | 0.285714328.6% |
|
||
| jalview.renderer.ResidueColourFinder jalview.renderer.ResidueColourFinder | 0.285714328.6% |
|
||
| jalview.schemes.JalviewColourScheme jalview.schemes.JalviewColourScheme | 0.285714328.6% |
|
||
| jalview.gui.SeqCanvas jalview.gui.SeqCanvas | 0.2855711328.6% |
|
||
| org.json.simple.parser.JSONParser org.json.simple.parser.JSONParser | 0.2846534628.5% |
|
||
| jalview.viewmodel.AlignmentViewport jalview.viewmodel.AlignmentViewport | 0.2828070228.3% |
|
||
| mc_view.Atom mc_view.Atom | 0.282051328.2% |
|
||
| jalview.gui.structurechooser.StructureChooserQuerySource jalview.gui.structurechooser.StructureChooserQuerySource | 0.2828% |
|
||
| jalview.io.FileParse jalview.io.FileParse | 0.2770083227.7% |
|
||
| jalview.io.IdentifyFile jalview.io.IdentifyFile | 0.2759643827.6% |
|
||
| jalview.ws.jws2.JabaWsServerQuery jalview.ws.jws2.JabaWsServerQuery | 0.2604166626% |
|
||
| jalview.structure.StructureSelectionManager jalview.structure.StructureSelectionManager | 0.2589838825.9% |
|
||
| jalview.gui.JvSwingUtils jalview.gui.JvSwingUtils | 0.258503425.9% |
|
||
| jalview.ws.uimodel.AlignAnalysisUIText jalview.ws.uimodel.AlignAnalysisUIText | 0.2439024424.4% |
|
||
| jalview.ws.rest.params.Alignment jalview.ws.rest.params.Alignment | 0.2435897424.4% |
|
||
| jalview.datamodel.SequenceCursor jalview.datamodel.SequenceCursor | 0.2333333323.3% |
|
||
| jalview.gui.AnnotationLabels jalview.gui.AnnotationLabels | 0.2324093923.2% |
|
||
| jalview.gui.PaintRefresher jalview.gui.PaintRefresher | 0.2323943723.2% |
|
||
| com.stevesoft.pat.Range com.stevesoft.pat.Range | 0.2272727322.7% |
|
||
| com.stevesoft.pat.Bracket com.stevesoft.pat.Bracket | 0.22522.5% |
|
||
| jalview.datamodel.features.FeatureAttributes jalview.datamodel.features.FeatureAttributes | 0.224806222.5% |
|
||
| jalview.util.MapList jalview.util.MapList | 0.2246153822.5% |
|
||
| jalview.ws.jws2.Jws2Client jalview.ws.jws2.Jws2Client | 0.2228915722.3% |
|
||
| jalview.datamodel.features.FeatureStore jalview.datamodel.features.FeatureStore | 0.220543822.1% |
|
||
| jalview.gui.ScalePanel jalview.gui.ScalePanel | 0.2187521.9% |
|
||
| jalview.util.QuickSort jalview.util.QuickSort | 0.2135922321.4% |
|
||
| jalview.datamodel.features.FeatureAttributes.AttributeData jalview.datamodel.features.FeatureAttributes.AttributeData | 0.2127659621.3% |
|
||
| jalview.analysis.scoremodels.ScoreModels jalview.analysis.scoremodels.ScoreModels | 0.2115384621.2% |
|
||
| com.stevesoft.pat.Regex com.stevesoft.pat.Regex | 0.2072727220.7% |
|
||
| jalview.ws.rest.InputType jalview.ws.rest.InputType | 0.2056074720.6% |
|
||
| jalview.datamodel.SequenceFeature jalview.datamodel.SequenceFeature | 0.2014388420.1% |
|
||
| jalview.datamodel.features.SequenceFeatures jalview.datamodel.features.SequenceFeatures | 0.191082819.1% |
|
||
| jalview.fts.core.FTSDataColumnPreferences.FTSDataColumnPrefsTableModel jalview.fts.core.FTSDataColumnPreferences.FTSDataColumnPrefsTableModel | 0.1857142918.6% |
|
||
| com.stevesoft.pat.Pattern com.stevesoft.pat.Pattern | 0.1805555518.1% |
|
||
| com.stevesoft.pat.patInt com.stevesoft.pat.patInt | 0.17517.5% |
|
||
| jalview.schemes.IdColourScheme jalview.schemes.IdColourScheme | 0.1739130517.4% |
|
||
| jalview.datamodel.Alignment jalview.datamodel.Alignment | 0.1654411716.5% |
|
||
| jalview.ws.jws1.WS1Client jalview.ws.jws1.WS1Client | 0.1616% |
|
||
| jalview.analysis.AnnotationSorter jalview.analysis.AnnotationSorter | 0.1562515.6% |
|
||
| jalview.gui.Desktop.MyDesktopManager jalview.gui.Desktop.MyDesktopManager | 0.1555555615.6% |
|
||
| jalview.gui.AnnotationPanel jalview.gui.AnnotationPanel | 0.1491596714.9% |
|
||
| jalview.schemes.TCoffeeColourScheme jalview.schemes.TCoffeeColourScheme | 0.1475409914.8% |
|
||
| jalview.fts.core.FTSRestClient jalview.fts.core.FTSRestClient | 0.1467181414.7% |
|
||
| jalview.ws.jws2.JabaParamStore jalview.ws.jws2.JabaParamStore | 0.1458333314.6% |
|
||
| jalview.workers.AlignCalcWorker jalview.workers.AlignCalcWorker | 0.1428571514.3% |
|
||
| jalview.log.JLogger jalview.log.JLogger | 0.1428571514.3% |
|
||
| jalview.gui.Desktop.MyDesktopPane jalview.gui.Desktop.MyDesktopPane | 0.1428571514.3% |
|
||
| jalview.io.AppletFormatAdapter jalview.io.AppletFormatAdapter | 0.1428571514.3% |
|
||
| jalview.ws.dbsources.EBIAlfaFold jalview.ws.dbsources.EBIAlfaFold | 0.1314878913.1% |
|
||
| jalview.datamodel.GroupSet jalview.datamodel.GroupSet | 0.1293103412.9% |
|
||
| jalview.gui.AlignFrame jalview.gui.AlignFrame | 0.12452306612.5% |
|
||
| jalview.ws.rest.params.SeqGroupIndexVector jalview.ws.rest.params.SeqGroupIndexVector | 0.12408759412.4% |
|
||
| jalview.io.FormatAdapter jalview.io.FormatAdapter | 0.1212% |
|
||
| jalview.schemes.Blosum62ColourScheme jalview.schemes.Blosum62ColourScheme | 0.1176470611.8% |
|
||
| jalview.ws.rest.RestClient jalview.ws.rest.RestClient | 0.11538461611.5% |
|
||
| jalview.util.StringUtils jalview.util.StringUtils | 0.1130434811.3% |
|
||
| jalview.util.ShortcutKeyMaskExWrapper jalview.util.ShortcutKeyMaskExWrapper | 0.1111111111.1% |
|
||
| jalview.ws.sifts.SiftsSettings jalview.ws.sifts.SiftsSettings | 0.1111111111.1% |
|
||
| jalview.schemes.ColourSchemeProperty jalview.schemes.ColourSchemeProperty | 0.1111111111.1% |
|
||
| jalview.util.ColorUtils jalview.util.ColorUtils | 0.108635110.9% |
|
||
| jalview.util.Platform jalview.util.Platform | 0.10849056410.8% |
|
||
| jalview.log.JLoggerLog4j jalview.log.JLoggerLog4j | 0.10679611610.7% |
|
||
| jalview.datamodel.Mapping jalview.datamodel.Mapping | 0.10389610410.4% |
|
||
| jalview.analysis.scoremodels.ScoreMatrix jalview.analysis.scoremodels.ScoreMatrix | 0.1028806610.3% |
|
||
| jalview.ws.rest.params.AnnotationFile jalview.ws.rest.params.AnnotationFile | 0.10256410410.3% |
|
||
| jalview.io.FileFormat jalview.io.FileFormat | 0.1021897810.2% |
|
||
| com.stevesoft.pat.parsePerl com.stevesoft.pat.parsePerl | 0.098639469.9% |
|
||
| jalview.datamodel.ContactMatrixI jalview.datamodel.ContactMatrixI | 0.0970873769.7% |
|
||
| org.json.simple.parser.Yytoken org.json.simple.parser.Yytoken | 0.096774199.7% |
|
||
| jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient | 0.093759.4% |
|
||
| com.stevesoft.pat.Or com.stevesoft.pat.Or | 0.089743599% |
|
||
| jalview.ws.dbsources.Xfam jalview.ws.dbsources.Xfam | 0.086956528.7% |
|
||
| jalview.util.CaseInsensitiveString jalview.util.CaseInsensitiveString | 0.086956528.7% |
|
||
| jalview.renderer.ResidueShader jalview.renderer.ResidueShader | 0.0853658548.5% |
|
||
| jalview.ext.ensembl.EnsemblSequenceFetcher jalview.ext.ensembl.EnsemblSequenceFetcher | 0.0833333368.3% |
|
||
| jalview.gui.Console jalview.gui.Console | 0.082568818.3% |
|
||
| jalview.schemes.RNAHelicesColour jalview.schemes.RNAHelicesColour | 0.082191788.2% |
|
||
| jalview.gui.ProgressBar jalview.gui.ProgressBar | 0.081300818.1% |
|
||
| jalview.gui.Desktop jalview.gui.Desktop | 0.080296138% |
|
||
| jalview.bin.Console jalview.bin.Console | 0.078817737.9% |
|
||
| com.stevesoft.pat.OrMark com.stevesoft.pat.OrMark | 0.0757.5% |
|
||
| jalview.datamodel.ColumnSelection.IntList jalview.datamodel.ColumnSelection.IntList | 0.074766357.5% |
|
||
| com.stevesoft.pat.FastMulti com.stevesoft.pat.FastMulti | 0.0740740757.4% |
|
||
| jalview.gui.StructureChooser jalview.gui.StructureChooser | 0.071829417.2% |
|
||
| jalview.schemes.ColourSchemes jalview.schemes.ColourSchemes | 0.070175447% |
|
||
| jalview.gui.IdPanel jalview.gui.IdPanel | 0.067264576.7% |
|
||
| jalview.schemes.PIDColourScheme jalview.schemes.PIDColourScheme | 0.066666676.7% |
|
||
| jalview.fts.service.pdb.PDBFTSRestClient jalview.fts.service.pdb.PDBFTSRestClient | 0.065502186.6% |
|
||
| com.stevesoft.pat.RegOpt com.stevesoft.pat.RegOpt | 0.06474826.5% |
|
||
| jalview.analysis.CrossRef jalview.analysis.CrossRef | 0.063524596.4% |
|
||
| jalview.datamodel.DBRefEntry jalview.datamodel.DBRefEntry | 0.0616438356.2% |
|
||
| ext.vamsas.ServiceHandle ext.vamsas.ServiceHandle | 0.061224496.1% |
|
||
| jalview.gui.ViewSelectionMenu jalview.gui.ViewSelectionMenu | 0.059405945.9% |
|
||
| jalview.ws.seqfetcher.ASequenceFetcher jalview.ws.seqfetcher.ASequenceFetcher | 0.0577777775.8% |
|
||
| jalview.structure.StructureImportSettings jalview.structure.StructureImportSettings | 0.0571428575.7% |
|
||
| jalview.analysis.AlignmentUtils jalview.analysis.AlignmentUtils | 0.0555927685.6% |
|
||
| jalview.ws.seqfetcher.DbSourceProxyImpl jalview.ws.seqfetcher.DbSourceProxyImpl | 0.0540540555.4% |
|
||
| jalview.ws.jws1.Discoverer jalview.ws.jws1.Discoverer | 0.0512820525.1% |
|
||
| jalview.analysis.GeneticCodes jalview.analysis.GeneticCodes | 0.0496894425% |
|
||
| jalview.bin.Cache jalview.bin.Cache | 0.0482093654.8% |
|
||
| jalview.datamodel.SecondaryStructureCount jalview.datamodel.SecondaryStructureCount | 0.0468754.7% |
|
||
| jalview.structure.StructureMapping jalview.structure.StructureMapping | 0.0466321264.7% |
|
||
| jalview.util.DBRefUtils jalview.util.DBRefUtils | 0.0451807234.5% |
|
||
| jalview.datamodel.ColumnSelection jalview.datamodel.ColumnSelection | 0.044673544.5% |
|
||
| jalview.gui.WsParamSetManager jalview.gui.WsParamSetManager | 0.0429447854.3% |
|
||
| jalview.ws.dbsources.Pdb jalview.ws.dbsources.Pdb | 0.042553194.3% |
|
||
| org.json.simple.JSONObject org.json.simple.JSONObject | 0.037735853.8% |
|
||
| jalview.datamodel.HiddenColumns jalview.datamodel.HiddenColumns | 0.037735853.8% |
|
||
| jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource | 0.0339943363.4% |
|
||
| jalview.analysis.AlignmentAnnotationUtils jalview.analysis.AlignmentAnnotationUtils | 0.033018873.3% |
|
||
| jalview.ws.jws1.JPredClient jalview.ws.jws1.JPredClient | 0.0310559013.1% |
|
||
| jalview.datamodel.HiddenSequences jalview.datamodel.HiddenSequences | 0.027397262.7% |
|
||
| jalview.util.MappingUtils jalview.util.MappingUtils | 0.0237068962.4% |
|
||
| jalview.gui.structurechooser.PDBStructureChooserQuerySource jalview.gui.structurechooser.PDBStructureChooserQuerySource | 0.017751481.8% |
|
||
| jalview.schemes.ClustalxColourScheme jalview.schemes.ClustalxColourScheme | 0.0169491531.7% |
|
||
| jalview.datamodel.HiddenColumnsCursor jalview.datamodel.HiddenColumnsCursor | 0.0156251.6% |
|
||
| jalview.ws.dbsources.Uniprot jalview.ws.dbsources.Uniprot | 0.0155642021.6% |
|
||
| jalview.controller.AlignViewController jalview.controller.AlignViewController | 0.0135593221.4% |
|
||
| jalview.gui.StructureViewer jalview.gui.StructureViewer | 0.0135135141.4% |
|
||
| jalview.datamodel.SearchResults jalview.datamodel.SearchResults | 0.0128205131.3% |
|
||
| jalview.gui.SeqPanel jalview.gui.SeqPanel | 0.0125082291.3% |
|
||
| jalview.io.SequenceAnnotationReport jalview.io.SequenceAnnotationReport | 0.0122699381.2% |
|
||
| jalview.gui.SequenceFetcher jalview.gui.SequenceFetcher | 0.0085106380.9% |
|
||
| jalview.ext.ensembl.EnsemblGene jalview.ext.ensembl.EnsemblGene | 0.0081632650.8% |
|
||
| jalview.bin.Jalview jalview.bin.Jalview | 0.0080935250.8% |
|
||
| org.json.simple.JSONArray org.json.simple.JSONArray | 0.0080645160.8% |
|
||
| jalview.renderer.seqfeatures.FeatureRenderer jalview.renderer.seqfeatures.FeatureRenderer | 0.007547170.8% |
|
||
| com.stevesoft.pat.RegRes com.stevesoft.pat.RegRes | 0.0072463770.7% |
|
||
| jalview.gui.QuitHandler jalview.gui.QuitHandler | 0.00722021660.7% |
|
||
| jalview.ext.jmol.JalviewJmolBinding jalview.ext.jmol.JalviewJmolBinding | 0.0040485830.4% |
|
||
| com.stevesoft.pat.CaseMgr com.stevesoft.pat.CaseMgr | 0.00278551530.3% |
|
||
| jalview.schemes.ResidueProperties jalview.schemes.ResidueProperties | 0.00105042020.1% |
|
||