|
com.stevesoft.pat.patInf
com.stevesoft.pat.patInf
|
1.0100%
|
|
|
com.stevesoft.pat.FastChar
com.stevesoft.pat.FastChar
|
1.0100%
|
|
|
jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
|
1.0100%
|
|
|
jalview.datamodel.AlignmentAnnotation.AnnotCharSequence
jalview.datamodel.AlignmentAnnotation.AnnotCharSequence
|
0.925925992.6%
|
|
|
jalview.datamodel.Profiles
jalview.datamodel.Profiles
|
0.866666786.7%
|
|
|
com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
|
0.8585%
|
|
|
com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
|
0.8461538684.6%
|
|
|
jalview.analysis.Conservation
jalview.analysis.Conservation
|
0.840579784.1%
|
|
|
com.stevesoft.pat.SubMark
com.stevesoft.pat.SubMark
|
0.880%
|
|
|
com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
|
0.779069877.9%
|
|
|
com.stevesoft.pat.Skip2
com.stevesoft.pat.Skip2
|
0.777777877.8%
|
|
|
com.stevesoft.pat.FastBracket
com.stevesoft.pat.FastBracket
|
0.7544910375.4%
|
|
|
com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
|
0.7575%
|
|
|
com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
|
0.685714368.6%
|
|
|
com.stevesoft.pat.Range
com.stevesoft.pat.Range
|
0.681818268.2%
|
|
|
jalview.workers.SecondaryStructureConsensusThread
jalview.workers.SecondaryStructureConsensusThread
|
0.6747967667.5%
|
|
|
com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
|
0.662566.3%
|
|
|
com.stevesoft.pat.wrap.StringWrap
com.stevesoft.pat.wrap.StringWrap
|
0.62562.5%
|
|
|
com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
|
0.601851960.2%
|
|
|
com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
|
0.583333358.3%
|
|
|
com.stevesoft.pat.Or
com.stevesoft.pat.Or
|
0.564102656.4%
|
|
|
com.stevesoft.pat.Start
com.stevesoft.pat.Start
|
0.5454545654.5%
|
|
|
com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
|
0.5251798652.5%
|
|
|
jalview.datamodel.Profile
jalview.datamodel.Profile
|
0.5245901352.5%
|
|
|
com.stevesoft.pat.NullPattern
com.stevesoft.pat.NullPattern
|
0.550%
|
|
|
jalview.analysis.SecStrConsensus.SimpleBP
jalview.analysis.SecStrConsensus.SimpleBP
|
0.550%
|
|
|
jalview.io.AlignFile
jalview.io.AlignFile
|
0.4657534446.6%
|
|
|
jalview.workers.ConservationThread
jalview.workers.ConservationThread
|
0.4655172546.6%
|
|
|
com.stevesoft.pat.Branch
com.stevesoft.pat.Branch
|
0.4630872646.3%
|
|
|
com.stevesoft.pat.Skip
com.stevesoft.pat.Skip
|
0.4594594545.9%
|
|
|
jalview.io.StockholmFile
jalview.io.StockholmFile
|
0.433155143.3%
|
|
|
jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
0.4285714342.9%
|
|
|
jalview.analysis.Rna
jalview.analysis.Rna
|
0.41541.5%
|
|
|
com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
|
0.3863636338.6%
|
|
|
jalview.util.Format
jalview.util.Format
|
0.3209109632.1%
|
|
|
jalview.io.FastaFile
jalview.io.FastaFile
|
0.315315331.5%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.3140096731.4%
|
|
|
com.stevesoft.pat.End
com.stevesoft.pat.End
|
0.3103448231%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.330%
|
|
|
com.stevesoft.pat.DotMulti
com.stevesoft.pat.DotMulti
|
0.2971014429.7%
|
|
|
jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
|
0.2872727228.7%
|
|
|
jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
|
0.2525%
|
|
|
com.stevesoft.pat.StringRule
com.stevesoft.pat.StringRule
|
0.2525%
|
|
|
jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
|
|
|
jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
|
0.2183235921.8%
|
|
|
com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
|
0.217391321.7%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.2119377121.2%
|
|
|
jalview.workers.AlignCalcManager
jalview.workers.AlignCalcManager
|
0.2083333320.8%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.1968503919.7%
|
|
|
jalview.io.AnnotationFile
jalview.io.AnnotationFile
|
0.1657874916.6%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.1606648316.1%
|
|
|
com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
|
0.1598639516%
|
|
|
jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.132812513.3%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.1210191112.1%
|
|
|
jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
|
0.11538461611.5%
|
|
|
jalview.bin.Console
jalview.bin.Console
|
0.11330049511.3%
|
|
|
com.stevesoft.pat.ReplaceRule
com.stevesoft.pat.ReplaceRule
|
0.08771938.8%
|
|
|
jalview.gui.Console
jalview.gui.Console
|
0.082568818.3%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.0808823568.1%
|
|
|
jalview.log.JLogger
jalview.log.JLogger
|
0.065934076.6%
|
|
|
jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
|
0.065217396.5%
|
|
|
jalview.gui.SplashScreen
jalview.gui.SplashScreen
|
0.0649350666.5%
|
|
|
jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.0617283966.2%
|
|
|
jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.057553965.8%
|
|
|
jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.049504955%
|
|
|
jalview.analysis.AlignmentAnnotationUtils
jalview.analysis.AlignmentAnnotationUtils
|
0.0471698124.7%
|
|
|
jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
|
0.0468754.7%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.045112784.5%
|
|
|
jalview.util.StringUtils
jalview.util.StringUtils
|
0.0324483773.2%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.0316804423.2%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.022614842.3%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.0188679251.9%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.0165148061.7%
|
|
|
jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
|
0.0164899881.6%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.0162094761.6%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
|
0.0144927541.4%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.01397624051.4%
|
|
|
jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.01219512151.2%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.009132420.9%
|
|
|
jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
|
0.0082644620.8%
|
|
|
jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
0.0078781520.8%
|
|
|
jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.004566210.5%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.00379834250.4%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.00359712240.4%
|
|
|
com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
|
0.00278551530.3%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.00235849060.2%
|
|
