|
jalview.io.DataSourceType
jalview.io.DataSourceType
|
1.0100%
|
|
|
jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
|
1.0100%
|
|
|
jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
|
1.0100%
|
|
|
jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
|
1.0100%
|
|
|
jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
|
1.0100%
|
|
|
jalview.schemes.FlowerColourScheme
jalview.schemes.FlowerColourScheme
|
1.0100%
|
|
|
jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
|
1.0100%
|
|
|
jalview.schemes.NucleotideAmbiguityColourScheme
jalview.schemes.NucleotideAmbiguityColourScheme
|
1.0100%
|
|
|
jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
|
1.0100%
|
|
|
jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
|
1.0100%
|
|
|
jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
|
1.0100%
|
|
|
jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
|
1.0100%
|
|
|
jalview.schemes.BlossomColourScheme
jalview.schemes.BlossomColourScheme
|
1.0100%
|
|
|
jalview.schemes.SunsetColourScheme
jalview.schemes.SunsetColourScheme
|
1.0100%
|
|
|
jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
|
1.0100%
|
|
|
jalview.schemes.OceanColourScheme
jalview.schemes.OceanColourScheme
|
1.0100%
|
|
|
jalview.schemes.ClustalxColourScheme.ConsensusColour
jalview.schemes.ClustalxColourScheme.ConsensusColour
|
1.0100%
|
|
|
jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
|
0.9494%
|
|
|
jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
|
0.7727272577.3%
|
|
|
jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
|
0.7142857371.4%
|
|
|
jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
|
0.7142857371.4%
|
|
|
jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.644067864.4%
|
|
|
jalview.jbgui.GAlignFrame
jalview.jbgui.GAlignFrame
|
0.571820757.2%
|
|
|
jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
|
0.571428657.1%
|
|
|
jalview.schemes.ScoreColourScheme
jalview.schemes.ScoreColourScheme
|
0.562556.2%
|
|
|
jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
|
0.5238095552.4%
|
|
|
jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
|
0.550%
|
|
|
jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
|
0.550%
|
|
|
jalview.gui.SplashScreen.SplashImage
jalview.gui.SplashScreen.SplashImage
|
0.4705882447.1%
|
|
|
jalview.schemes.Consensus
jalview.schemes.Consensus
|
0.4545454745.5%
|
|
|
jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
|
0.4322033843.2%
|
|
|
jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
0.4285714342.9%
|
|
|
jalview.analysis.Conservation
jalview.analysis.Conservation
|
0.4227053242.3%
|
|
|
jalview.util.ShortcutKeyMaskExWrapper11
jalview.util.ShortcutKeyMaskExWrapper11
|
0.4166666641.7%
|
|
|
jalview.workers.ConservationThread
jalview.workers.ConservationThread
|
0.3620689536.2%
|
|
|
jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
|
0.3606557336.1%
|
|
|
jalview.io.FileFormats
jalview.io.FileFormats
|
0.3636%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.3571428735.7%
|
|
|
jalview.io.AlignFile
jalview.io.AlignFile
|
0.356164435.6%
|
|
|
jalview.io.FileLoader
jalview.io.FileLoader
|
0.3533333235.3%
|
|
|
jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
|
0.347826134.8%
|
|
|
jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
|
0.3424657634.2%
|
|
|
jalview.io.FastaFile
jalview.io.FastaFile
|
0.315315331.5%
|
|
|
jalview.ws.utils.UrlDownloadClient
jalview.ws.utils.UrlDownloadClient
|
0.3142857331.4%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.3110236231.1%
|
|
|
jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
|
0.30797130.8%
|
|
|
jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
|
0.2872727228.7%
|
|
|
jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.2853881428.5%
|
|
|
jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
|
0.2807017628.1%
|
|
|
jalview.workers.AlignCalcManager
jalview.workers.AlignCalcManager
|
0.279761928%
|
|
|
jalview.io.IdentifyFile
jalview.io.IdentifyFile
|
0.276923127.7%
|
|
|
jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
|
0.2767962227.7%
|
|
|
jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
|
0.2352941223.5%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.2325088423.3%
|
|
|
jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
|
0.2323943723.2%
|
|
|
jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
|
0.231023123.1%
|
|
|
jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
|
0.1666666716.7%
|
|
|
jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
|
0.1666666716.7%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.1634349116.3%
|
|
|
jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
|
0.1555555615.6%
|
|
|
jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
|
0.1428571514.3%
|
|
|
jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.132812513.3%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.1277573612.8%
|
|
|
jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
|
0.12512.5%
|
|
|
jalview.io.FormatAdapter
jalview.io.FormatAdapter
|
0.1212%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.1156462611.6%
|
|
|
jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
|
0.11538461611.5%
|
|
|
jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
|
0.1111111111.1%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.1052631610.5%
|
|
|
jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
|
0.0993788849.9%
|
|
|
jalview.gui.SplashScreen
jalview.gui.SplashScreen
|
0.0974025959.7%
|
|
|
jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
|
0.09523819.5%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.094290669.4%
|
|
|
jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.0853658548.5%
|
|
|
jalview.gui.Console
jalview.gui.Console
|
0.082568818.3%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.081837018.2%
|
|
|
jalview.gui.ProgressBar
jalview.gui.ProgressBar
|
0.081300818.1%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.080296138%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.074879237.5%
|
|
|
jalview.util.HttpUtils
jalview.util.HttpUtils
|
0.070175447%
|
|
|
jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.067264576.7%
|
|
|
jalview.log.JLogger
jalview.log.JLogger
|
0.065934076.6%
|
|
|
jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
|
0.0657894766.6%
|
|
|
jalview.analysis.CrossRef
jalview.analysis.CrossRef
|
0.063524596.4%
|
|
|
jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
|
0.059405945.9%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.0582403955.8%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.0566037745.7%
|
|
|
jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.052521015.3%
|
|
|
jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
|
0.0496894425%
|
|
|
jalview.bin.Console
jalview.bin.Console
|
0.0492610824.9%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.0413223134.1%
|
|
|
jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.0373831763.7%
|
|
|
jalview.analysis.AlignmentAnnotationUtils
jalview.analysis.AlignmentAnnotationUtils
|
0.033018873.3%
|
|
|
jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
|
0.029702973%
|
|
|
jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.0288065842.9%
|
|
|
jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.0245614032.5%
|
|
|
jalview.workers.SecondaryStructureConsensusThread
jalview.workers.SecondaryStructureConsensusThread
|
0.0243902432.4%
|
|
|
jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.0240963852.4%
|
|
|
jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
|
0.0238095242.4%
|
|
|
jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.02343752.3%
|
|
|
jalview.util.StringUtils
jalview.util.StringUtils
|
0.0202898552%
|
|
|
jalview.util.ColorUtils
jalview.util.ColorUtils
|
0.0194986071.9%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.0144230771.4%
|
|
|
jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0135593221.4%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.01275510251.3%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.0127388541.3%
|
|
|
jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0125082291.3%
|
|
|
jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.0122699381.2%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0119718311.2%
|
|
|
jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.0116071431.2%
|
|
|
jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.0106609811.1%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.009132420.9%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.0080935250.8%
|
|
|
jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.0080160320.8%
|
|
|
jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.007547170.8%
|
|
|
jalview.gui.QuitHandler
jalview.gui.QuitHandler
|
0.00722021660.7%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.0070754720.7%
|
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.00343642620.3%
|
|
