Test testSaveAndLoadAnnotationBasedTree

Test	Status	Start time	Time (seconds)	Message
testSaveAndLoadAnnotationBasedTree	1PASS	18 Nov 10:55:35	5.556

Target Class	Coverage contributed by testSaveAndLoadAnnotationBasedTree
jalview.gui.FeatureRenderer   jalview.gui.FeatureRenderer	1.0100%
com.stevesoft.pat.patInf   com.stevesoft.pat.patInf	1.0100%
jalview.io.DataSourceType   jalview.io.DataSourceType	1.0100%
jalview.xml.binding.jalview.AnnotationElement   jalview.xml.binding.jalview.AnnotationElement	1.0100%
jalview.xml.binding.jalview.Property   jalview.xml.binding.jalview.Property	1.0100%
jalview.xml.binding.jalview.SequenceType   jalview.xml.binding.jalview.SequenceType	1.0100%
jalview.xml.binding.jalview.JalviewModel.FeatureSettings   jalview.xml.binding.jalview.JalviewModel.FeatureSettings	1.0100%
jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Group   jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Group	1.0100%
jalview.xml.binding.jalview.JalviewModel.Tree.TreeColorMap   jalview.xml.binding.jalview.JalviewModel.Tree.TreeColorMap	1.0100%
jalview.xml.binding.jalview.JalviewModel.Tree.TreeColorMap.ColorEntry   jalview.xml.binding.jalview.JalviewModel.Tree.TreeColorMap.ColorEntry	1.0100%
jalview.xml.binding.jalview.Pdbentry   jalview.xml.binding.jalview.Pdbentry	1.0100%
jalview.xml.binding.jalview.Pdbentry.Property   jalview.xml.binding.jalview.Pdbentry.Property	1.0100%
jalview.xml.binding.jalview.MapListType   jalview.xml.binding.jalview.MapListType	1.0100%
jalview.xml.binding.jalview.MapListType.MapListFrom   jalview.xml.binding.jalview.MapListType.MapListFrom	1.0100%
jalview.xml.binding.jalview.MapListType.MapListTo   jalview.xml.binding.jalview.MapListType.MapListTo	1.0100%
jalview.ws.WSClient   jalview.ws.WSClient	1.0100%
jalview.project.Jalview2XML.JvAnnotRow   jalview.project.Jalview2XML.JvAnnotRow	1.0100%
jalview.datamodel.GroupSetHolder   jalview.datamodel.GroupSetHolder	1.0100%
jalview.datamodel.SecondaryStructureCount.SymbolCounts   jalview.datamodel.SecondaryStructureCount.SymbolCounts	1.0100%
jalview.datamodel.ResidueCount.SymbolCounts   jalview.datamodel.ResidueCount.SymbolCounts	1.0100%
jalview.analysis.TreeEngine   jalview.analysis.TreeEngine	0.9428571594.3%
jalview.xml.binding.jalview.Feature   jalview.xml.binding.jalview.Feature	0.941176594.1%
jalview.jbgui.GAlignmentPanel   jalview.jbgui.GAlignmentPanel	0.9494%
jalview.analysis.NJTree   jalview.analysis.NJTree	0.916666791.7%
jalview.xml.binding.jalview.SequenceSet   jalview.xml.binding.jalview.SequenceSet	0.894736889.5%
jalview.gui.TreePanel.TreeLoader   jalview.gui.TreePanel.TreeLoader	0.8723404487.2%
jalview.analysis.Conservation   jalview.analysis.Conservation	0.869565287%
jalview.datamodel.Profiles   jalview.datamodel.Profiles	0.866666786.7%
jalview.xml.binding.jalview.JalviewModel.Tree   jalview.xml.binding.jalview.JalviewModel.Tree	0.8653846486.5%
jalview.xml.binding.jalview.Annotation   jalview.xml.binding.jalview.Annotation	0.859649186%
jalview.viewmodel.styles.ViewStyle   jalview.viewmodel.styles.ViewStyle	0.858695685.9%
jalview.util.QuickSort.IntComparator   jalview.util.QuickSort.IntComparator	0.8571428785.7%
com.stevesoft.pat.OrMark   com.stevesoft.pat.OrMark	0.8585%
com.stevesoft.pat.Rthings   com.stevesoft.pat.Rthings	0.8461538684.6%
jalview.xml.binding.jalview.JalviewModel   jalview.xml.binding.jalview.JalviewModel	0.8461538684.6%
jalview.viewmodel.seqfeatures.FeatureRendererSettings   jalview.viewmodel.seqfeatures.FeatureRendererSettings	0.8444444584.4%
jalview.xml.binding.jalview.Feature.OtherData   jalview.xml.binding.jalview.Feature.OtherData	0.833333383.3%
jalview.xml.binding.jalview.JalviewModel.JSeq.Pdbids   jalview.xml.binding.jalview.JalviewModel.JSeq.Pdbids	0.833333383.3%
jalview.analysis.scoremodels.SecondaryStructureDistanceModel   jalview.analysis.scoremodels.SecondaryStructureDistanceModel	0.816455781.6%
jalview.xml.binding.jalview.JalviewModel.Viewport   jalview.xml.binding.jalview.JalviewModel.Viewport	0.81612981.6%
com.stevesoft.pat.SubMark   com.stevesoft.pat.SubMark	0.880%
jalview.analysis.TreeBuilder   jalview.analysis.TreeBuilder	0.7951807479.5%
jalview.xml.binding.jalview.JalviewModel.JSeq   jalview.xml.binding.jalview.JalviewModel.JSeq	0.770833377.1%
jalview.datamodel.Profile   jalview.datamodel.Profile	0.770491877%
jalview.xml.binding.jalview.MatrixType   jalview.xml.binding.jalview.MatrixType	0.7608695676.1%
jalview.xml.binding.jalview.Sequence.DBRef   jalview.xml.binding.jalview.Sequence.DBRef	0.7575%
com.stevesoft.pat.wrap.StringWrap   com.stevesoft.pat.wrap.StringWrap	0.7575%
jalview.xml.binding.jalview.JalviewModel.JGroup   jalview.xml.binding.jalview.JalviewModel.JGroup	0.746376874.6%
jalview.workers.SecondaryStructureConsensusThread   jalview.workers.SecondaryStructureConsensusThread	0.739837474%
jalview.workers.ConsensusThread   jalview.workers.ConsensusThread	0.722772372.3%
jalview.datamodel.FloatContactMatrix   jalview.datamodel.FloatContactMatrix	0.7272%
jalview.xml.binding.jalview.Sequence   jalview.xml.binding.jalview.Sequence	0.7142857371.4%
com.stevesoft.pat.Bracket   com.stevesoft.pat.Bracket	0.770%
com.stevesoft.pat.oneChar   com.stevesoft.pat.oneChar	0.685714368.6%
jalview.ws.SequenceFetcher   jalview.ws.SequenceFetcher	0.678571467.9%
jalview.workers.ConservationThread   jalview.workers.ConservationThread	0.655172465.5%
com.stevesoft.pat.Range   com.stevesoft.pat.Range	0.636363663.6%
jalview.datamodel.BinaryNode   jalview.datamodel.BinaryNode	0.636363663.6%
com.stevesoft.pat.StrPos   com.stevesoft.pat.StrPos	0.6162790761.6%
jalview.analysis.SequenceIdMatcher.SeqIdName   jalview.analysis.SequenceIdMatcher.SeqIdName	0.605263260.5%
jalview.jbgui.GTreePanel   jalview.jbgui.GTreePanel	0.5939849659.4%
jalview.jbgui.GAlignFrame   jalview.jbgui.GAlignFrame	0.571820757.2%
jalview.workers.AlignCalcManager   jalview.workers.AlignCalcManager	0.5357142753.6%
jalview.io.NewickFile   jalview.io.NewickFile	0.526195952.6%
com.stevesoft.pat.Boundary   com.stevesoft.pat.Boundary	0.518518551.9%
jalview.gui.JalviewChangeSupport   jalview.gui.JalviewChangeSupport	0.550%
com.stevesoft.pat.FastChar   com.stevesoft.pat.FastChar	0.550%
com.stevesoft.pat.FastMulti   com.stevesoft.pat.FastMulti	0.550%
jalview.viewmodel.ViewportProperties   jalview.viewmodel.ViewportProperties	0.550%
jalview.xml.binding.jalview.VAMSAS   jalview.xml.binding.jalview.VAMSAS	0.550%
jalview.analysis.scoremodels.SimilarityScoreModel   jalview.analysis.scoremodels.SimilarityScoreModel	0.550%
jalview.schemes.TaylorColourScheme   jalview.schemes.TaylorColourScheme	0.550%
jalview.schemes.FlowerColourScheme   jalview.schemes.FlowerColourScheme	0.550%
jalview.schemes.ZappoColourScheme   jalview.schemes.ZappoColourScheme	0.550%
jalview.schemes.NucleotideAmbiguityColourScheme   jalview.schemes.NucleotideAmbiguityColourScheme	0.550%
jalview.schemes.PurinePyrimidineColourScheme   jalview.schemes.PurinePyrimidineColourScheme	0.550%
jalview.schemes.NucleotideColourScheme   jalview.schemes.NucleotideColourScheme	0.550%
jalview.schemes.BlossomColourScheme   jalview.schemes.BlossomColourScheme	0.550%
jalview.schemes.SunsetColourScheme   jalview.schemes.SunsetColourScheme	0.550%
jalview.schemes.OceanColourScheme   jalview.schemes.OceanColourScheme	0.550%
com.stevesoft.pat.Pattern   com.stevesoft.pat.Pattern	0.4930555549.3%
jalview.analysis.TreeModel   jalview.analysis.TreeModel	0.4767441747.7%
jalview.util.MessageManager   jalview.util.MessageManager	0.4761904847.6%
jalview.analysis.AAFrequency   jalview.analysis.AAFrequency	0.4736842247.4%
jalview.datamodel.ResidueCount   jalview.datamodel.ResidueCount	0.4509090845.1%
com.stevesoft.pat.parsePerl   com.stevesoft.pat.parsePerl	0.448979644.9%
jalview.project.Jalview2XML   jalview.project.Jalview2XML	0.447683144.8%
jalview.datamodel.SecondaryStructureCount   jalview.datamodel.SecondaryStructureCount	0.445312544.5%
jalview.xml.binding.jalview.MapOnAMatrixType   jalview.xml.binding.jalview.MapOnAMatrixType	0.4444444544.4%
jalview.analysis.SequenceIdMatcher   jalview.analysis.SequenceIdMatcher	0.438596543.9%
jalview.gui.PaintRefresher   jalview.gui.PaintRefresher	0.4366197343.7%
jalview.gui.ColourMenuHelper   jalview.gui.ColourMenuHelper	0.4322033843.2%
jalview.project.Jalview2XML.forwardRef   jalview.project.Jalview2XML.forwardRef	0.4285714342.9%
jalview.datamodel.HiddenCursorPosition   jalview.datamodel.HiddenCursorPosition	0.4285714342.9%
jalview.util.ShortcutKeyMaskExWrapper11   jalview.util.ShortcutKeyMaskExWrapper11	0.4166666641.7%
jalview.gui.TreePanel   jalview.gui.TreePanel	0.4102564241%
com.stevesoft.pat.Or   com.stevesoft.pat.Or	0.4102564241%
jalview.viewmodel.AlignmentViewport   jalview.viewmodel.AlignmentViewport	0.4056537240.6%
jalview.ws.dbsources.EmblSource   jalview.ws.dbsources.EmblSource	0.440%
jalview.schemes.HydrophobicColourScheme   jalview.schemes.HydrophobicColourScheme	0.440%
jalview.schemes.HelixColourScheme   jalview.schemes.HelixColourScheme	0.440%
jalview.schemes.TurnColourScheme   jalview.schemes.TurnColourScheme	0.440%
jalview.schemes.StrandColourScheme   jalview.schemes.StrandColourScheme	0.440%
jalview.schemes.BuriedColourScheme   jalview.schemes.BuriedColourScheme	0.440%
jalview.log.JalviewAppender   jalview.log.JalviewAppender	0.388888938.9%
jalview.datamodel.PDBEntry.Type   jalview.datamodel.PDBEntry.Type	0.37537.5%
jalview.util.Comparison   jalview.util.Comparison	0.3740157537.4%
jalview.schemes.ResidueColourScheme   jalview.schemes.ResidueColourScheme	0.3571428735.7%
jalview.gui.AlignViewport   jalview.gui.AlignViewport	0.356164435.6%
jalview.gui.AlignmentPanel   jalview.gui.AlignmentPanel	0.3498233335%
jalview.ws.jws2.MsaWSClient   jalview.ws.jws2.MsaWSClient	0.348993334.9%
jalview.util.QuickSort   jalview.util.QuickSort	0.346278334.6%
jalview.datamodel.ContactMapHolder   jalview.datamodel.ContactMapHolder	0.3461538634.6%
jalview.util.ColorUtils   jalview.util.ColorUtils	0.3370473733.7%
jalview.viewmodel.ViewportRanges   jalview.viewmodel.ViewportRanges	0.33003333%
com.stevesoft.pat.Regex   com.stevesoft.pat.Regex	0.3333%
jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Setting   jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Setting	0.3225806432.3%
jalview.io.FileLoader   jalview.io.FileLoader	0.3232%
jalview.datamodel.SequenceFeature   jalview.datamodel.SequenceFeature	0.3165467731.7%
jalview.datamodel.ContactMatrix   jalview.datamodel.ContactMatrix	0.3161764731.6%
jalview.ws.rest.RestServiceDescription   jalview.ws.rest.RestServiceDescription	0.31531.5%
jalview.datamodel.SequenceNode   jalview.datamodel.SequenceNode	0.3076923230.8%
jalview.datamodel.SequenceGroup   jalview.datamodel.SequenceGroup	0.3067729230.7%
jalview.datamodel.CigarArray   jalview.datamodel.CigarArray	0.2959183829.6%
com.stevesoft.pat.RegRes   com.stevesoft.pat.RegRes	0.2898550629%
jalview.datamodel.Sequence   jalview.datamodel.Sequence	0.2871972328.7%
jalview.ws.dbsources.EmblCdsSource   jalview.ws.dbsources.EmblCdsSource	0.285714328.6%
jalview.schemes.JalviewColourScheme   jalview.schemes.JalviewColourScheme	0.285714328.6%
jalview.gui.IdCanvas   jalview.gui.IdCanvas	0.2807017628.1%
jalview.datamodel.SeqCigar   jalview.datamodel.SeqCigar	0.280487828%
jalview.ws.jws2.JabaPreset   jalview.ws.jws2.JabaPreset	0.2727272827.3%
jalview.analysis.AlignmentAnnotationUtils   jalview.analysis.AlignmentAnnotationUtils	0.268867926.9%
jalview.datamodel.DBRefEntry   jalview.datamodel.DBRefEntry	0.2671232826.7%
com.stevesoft.pat.NullPattern   com.stevesoft.pat.NullPattern	0.2525%
com.stevesoft.pat.StringRule   com.stevesoft.pat.StringRule	0.2525%
jalview.ws.rest.params.Alignment   jalview.ws.rest.params.Alignment	0.2435897424.4%
jalview.io.FileFormats   jalview.io.FileFormats	0.2424%
jalview.datamodel.PDBEntry   jalview.datamodel.PDBEntry	0.2384341723.8%
jalview.datamodel.SequenceCursor   jalview.datamodel.SequenceCursor	0.2333333323.3%
jalview.renderer.ResidueShader   jalview.renderer.ResidueShader	0.2317073223.2%
jalview.gui.JvSwingUtils   jalview.gui.JvSwingUtils	0.2312925223.1%
jalview.analysis.scoremodels.ScoreModels   jalview.analysis.scoremodels.ScoreModels	0.2307692323.1%
jalview.datamodel.features.FeatureStore   jalview.datamodel.features.FeatureStore	0.226586122.7%
jalview.datamodel.features.FeatureAttributes   jalview.datamodel.features.FeatureAttributes	0.224806222.5%
jalview.gui.IdwidthAdjuster   jalview.gui.IdwidthAdjuster	0.223684222.4%
jalview.datamodel.AlignmentAnnotation   jalview.datamodel.AlignmentAnnotation	0.221014522.1%
jalview.io.FileParse   jalview.io.FileParse	0.2160664821.6%
jalview.datamodel.features.FeatureAttributes.AttributeData   jalview.datamodel.features.FeatureAttributes.AttributeData	0.2127659621.3%
jalview.ws.jws2.jabaws2.Jws2Instance   jalview.ws.jws2.jabaws2.Jws2Instance	0.2068965620.7%
jalview.ws.rest.InputType   jalview.ws.rest.InputType	0.2056074720.6%
com.stevesoft.pat.patInt   com.stevesoft.pat.patInt	0.220%
jalview.schemes.ColourSchemeProperty   jalview.schemes.ColourSchemeProperty	0.1944444519.4%
jalview.datamodel.Alignment   jalview.datamodel.Alignment	0.1930147119.3%
jalview.datamodel.features.SequenceFeatures   jalview.datamodel.features.SequenceFeatures	0.191082819.1%
jalview.viewmodel.seqfeatures.FeaturesDisplayed   jalview.viewmodel.seqfeatures.FeaturesDisplayed	0.187518.8%
jalview.log.JLogger   jalview.log.JLogger	0.1868131918.7%
jalview.gui.TreeCanvas   jalview.gui.TreeCanvas	0.184494618.4%
jalview.schemes.IdColourScheme   jalview.schemes.IdColourScheme	0.1739130517.4%
jalview.analysis.scoremodels.SimilarityParams   jalview.analysis.scoremodels.SimilarityParams	0.17187517.2%
jalview.datamodel.CigarBase   jalview.datamodel.CigarBase	0.1710914517.1%
jalview.io.IdentifyFile   jalview.io.IdentifyFile	0.1692307716.9%
jalview.analysis.AnnotationSorter   jalview.analysis.AnnotationSorter	0.1679687516.8%
jalview.ws.datamodel.alphafold.MappableContactMatrix   jalview.ws.datamodel.alphafold.MappableContactMatrix	0.1673640216.7%
jalview.ws.jws1.WS1Client   jalview.ws.jws1.WS1Client	0.1616%
jalview.gui.Desktop.MyDesktopManager   jalview.gui.Desktop.MyDesktopManager	0.1555555615.6%
jalview.bin.Console   jalview.bin.Console	0.1527093615.3%
jalview.ws.jws2.Jws2Discoverer   jalview.ws.jws2.Jws2Discoverer	0.1504950515%
jalview.util.Format   jalview.util.Format	0.1490683314.9%
jalview.schemes.TCoffeeColourScheme   jalview.schemes.TCoffeeColourScheme	0.1475409914.8%
jalview.gui.Desktop.MyDesktopPane   jalview.gui.Desktop.MyDesktopPane	0.1428571514.3%
com.stevesoft.pat.Branch   com.stevesoft.pat.Branch	0.140939614.1%
jalview.analysis.CrossRef   jalview.analysis.CrossRef	0.1372950813.7%
jalview.datamodel.ContactMatrixI   jalview.datamodel.ContactMatrixI	0.1359223313.6%
jalview.gui.AlignFrame   jalview.gui.AlignFrame	0.1325966913.3%
jalview.ws.rest.params.SeqGroupIndexVector   jalview.ws.rest.params.SeqGroupIndexVector	0.12408759412.4%
jalview.datamodel.GroupSet   jalview.datamodel.GroupSet	0.1206896512.1%
jalview.schemes.Blosum62ColourScheme   jalview.schemes.Blosum62ColourScheme	0.1176470611.8%
jalview.util.StringUtils   jalview.util.StringUtils	0.1159420311.6%
jalview.ws.rest.RestClient   jalview.ws.rest.RestClient	0.11538461611.5%
jalview.datamodel.Annotation   jalview.datamodel.Annotation	0.11428571511.4%
jalview.util.ShortcutKeyMaskExWrapper   jalview.util.ShortcutKeyMaskExWrapper	0.1111111111.1%
jalview.analysis.scoremodels.ScoreMatrix   jalview.analysis.scoremodels.ScoreMatrix	0.1111111111.1%
jalview.analysis.SeqsetUtils   jalview.analysis.SeqsetUtils	0.1095890411%
jalview.gui.Desktop   jalview.gui.Desktop	0.10706150510.7%
jalview.log.JLoggerLog4j   jalview.log.JLoggerLog4j	0.10679611610.7%
jalview.util.DBRefUtils   jalview.util.DBRefUtils	0.10542168510.5%
jalview.datamodel.AlignmentView.ScGroup   jalview.datamodel.AlignmentView.ScGroup	0.1052631610.5%
jalview.ws.rest.params.AnnotationFile   jalview.ws.rest.params.AnnotationFile	0.10256410410.3%
jalview.datamodel.ContactListImpl   jalview.datamodel.ContactListImpl	0.1016949110.2%
jalview.structure.StructureSelectionManager   jalview.structure.StructureSelectionManager	0.099132599.9%
jalview.workers.AlignCalcWorker   jalview.workers.AlignCalcWorker	0.09523819.5%
jalview.schemes.FeatureColour   jalview.schemes.FeatureColour	0.0947368449.5%
com.stevesoft.pat.Replacer   com.stevesoft.pat.Replacer	0.091891899.2%
jalview.datamodel.AlignmentView   jalview.datamodel.AlignmentView	0.090638939.1%
jalview.ws.datamodel.alphafold.PAEContactMatrix   jalview.ws.datamodel.alphafold.PAEContactMatrix	0.0884955758.8%
com.stevesoft.pat.ReplaceRule   com.stevesoft.pat.ReplaceRule	0.08771938.8%
jalview.ws.dbsources.Xfam   jalview.ws.dbsources.Xfam	0.086956528.7%
jalview.ws.jws2.Jws2Client   jalview.ws.jws2.Jws2Client	0.0843373468.4%
jalview.ext.ensembl.EnsemblSequenceFetcher   jalview.ext.ensembl.EnsemblSequenceFetcher	0.0833333368.3%
jalview.gui.Console   jalview.gui.Console	0.082568818.3%
jalview.schemes.RNAHelicesColour   jalview.schemes.RNAHelicesColour	0.082191788.2%
jalview.gui.ProgressBar   jalview.gui.ProgressBar	0.081300818.1%
jalview.util.MapList   jalview.util.MapList	0.088%
jalview.math.Matrix   jalview.math.Matrix	0.0784313757.8%
jalview.viewmodel.seqfeatures.FeatureRendererModel   jalview.viewmodel.seqfeatures.FeatureRendererModel	0.070422547%
jalview.schemes.ColourSchemes   jalview.schemes.ColourSchemes	0.070175447%
jalview.analysis.AlignmentUtils   jalview.analysis.AlignmentUtils	0.069014096.9%
jalview.gui.IdPanel   jalview.gui.IdPanel	0.067264576.7%
jalview.schemes.PIDColourScheme   jalview.schemes.PIDColourScheme	0.066666676.7%
com.stevesoft.pat.RegOpt   com.stevesoft.pat.RegOpt	0.06474826.5%
ext.vamsas.ServiceHandle   ext.vamsas.ServiceHandle	0.061224496.1%
jalview.io.FileFormat   jalview.io.FileFormat	0.0601503776%
jalview.gui.AnnotationPanel   jalview.gui.AnnotationPanel	0.059873956%
jalview.gui.ViewSelectionMenu   jalview.gui.ViewSelectionMenu	0.059405945.9%
jalview.ws.seqfetcher.ASequenceFetcher   jalview.ws.seqfetcher.ASequenceFetcher	0.0577777775.8%
jalview.util.Platform   jalview.util.Platform	0.0566037745.7%
jalview.ws.seqfetcher.DbSourceProxyImpl   jalview.ws.seqfetcher.DbSourceProxyImpl	0.0540540555.4%
jalview.ws.jws1.Discoverer   jalview.ws.jws1.Discoverer	0.0512820525.1%
jalview.analysis.GeneticCodes   jalview.analysis.GeneticCodes	0.0496894425%
jalview.bin.Cache   jalview.bin.Cache	0.0482093654.8%
jalview.datamodel.HiddenSequences   jalview.datamodel.HiddenSequences	0.04566214.6%
jalview.gui.PCAPanel   jalview.gui.PCAPanel	0.043307094.3%
jalview.ws.dbsources.Pdb   jalview.ws.dbsources.Pdb	0.042553194.3%
jalview.ws.jws2.JabaParamStore   jalview.ws.jws2.JabaParamStore	0.0416666684.2%
jalview.xml.binding.jalview.ObjectFactory   jalview.xml.binding.jalview.ObjectFactory	0.0413223134.1%
jalview.datamodel.ColumnSelection.IntList   jalview.datamodel.ColumnSelection.IntList	0.0373831763.7%
jalview.gui.ScalePanel   jalview.gui.ScalePanel	0.035156253.5%
jalview.ws.jws1.JPredClient   jalview.ws.jws1.JPredClient	0.0310559013.1%
jalview.gui.SeqCanvas   jalview.gui.SeqCanvas	0.0290581162.9%
jalview.renderer.ResidueColourFinder   jalview.renderer.ResidueColourFinder	0.0238095242.4%
jalview.datamodel.HiddenColumns   jalview.datamodel.HiddenColumns	0.0188679251.9%
jalview.schemes.ClustalxColourScheme   jalview.schemes.ClustalxColourScheme	0.0169491531.7%
jalview.datamodel.HiddenColumnsCursor   jalview.datamodel.HiddenColumnsCursor	0.0156251.6%
jalview.ws.dbsources.Uniprot   jalview.ws.dbsources.Uniprot	0.0155642021.6%
jalview.gui.SequenceRenderer   jalview.gui.SequenceRenderer	0.0144230771.4%
jalview.controller.AlignViewController   jalview.controller.AlignViewController	0.0135593221.4%
jalview.datamodel.SearchResults   jalview.datamodel.SearchResults	0.0128205131.3%
jalview.analysis.AlignSeq   jalview.analysis.AlignSeq	0.01275510251.3%
jalview.gui.SeqPanel   jalview.gui.SeqPanel	0.0125082291.3%
jalview.io.SequenceAnnotationReport   jalview.io.SequenceAnnotationReport	0.0122699381.2%
jalview.util.HttpUtils   jalview.util.HttpUtils	0.01169590651.2%
jalview.bin.Jalview   jalview.bin.Jalview	0.0116906471.2%
jalview.renderer.AnnotationRenderer   jalview.renderer.AnnotationRenderer	0.0116071431.2%
jalview.gui.AnnotationLabels   jalview.gui.AnnotationLabels	0.0106609811.1%
jalview.gui.SequenceFetcher   jalview.gui.SequenceFetcher	0.0085106380.9%
jalview.bin.argparser.BootstrapArgs   jalview.bin.argparser.BootstrapArgs	0.0082644620.8%
jalview.ext.ensembl.EnsemblGene   jalview.ext.ensembl.EnsemblGene	0.0081632650.8%
jalview.renderer.seqfeatures.FeatureRenderer   jalview.renderer.seqfeatures.FeatureRenderer	0.007547170.8%
jalview.gui.QuitHandler   jalview.gui.QuitHandler	0.00722021660.7%
jalview.gui.RotatableCanvas   jalview.gui.RotatableCanvas	0.0051679590.5%
jalview.datamodel.ColumnSelection   jalview.datamodel.ColumnSelection	0.00343642620.3%
com.stevesoft.pat.CaseMgr   com.stevesoft.pat.CaseMgr	0.00278551530.3%