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Coverage Report

Class AlignmentUtilsTests

 
AlignmentUtilsTests 4949 00 00 0.028
1.0100%
 
AlignmentUtilsTests.testTransferFeatures_withOmitAlignmentUtilsTests.testTransferFeatures_withOmit 176288125476911 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testTransferGeneLociAlignmentUtilsTests.testTransferGeneLoci 176288125477111 Nov 17:14:14 1PASS 0.0010.001  
AlignmentUtilsTests.testMapCdsToProteinAlignmentUtilsTests.testMapCdsToProtein 176288125475311 Nov 17:14:14 1PASS 0.0010.001  
AlignmentUtilsTests.testIsMappableAlignmentUtilsTests.testIsMappable 176288125474311 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testFindCdsPositions_fivePrimeIncompleteAlignmentUtilsTests.testFindCdsPositions_fivePrimeIncomplete 176288125473911 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testIsSSAnnotationPresentAlignmentUtilsTests.testIsSSAnnotationPresent 176288125474411 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testTranslatesAsAlignmentUtilsTests.testTranslatesAs 176288125477211 Nov 17:14:14 1PASS 0.0010.001  
AlignmentUtilsTests.testFindCdsForProteinAlignmentUtilsTests.testFindCdsForProtein 176288125473711 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testAlignAsSameSequencesMultipleSubSeqAlignmentUtilsTests.testAlignAsSameSequencesMultipleSubSeq 176288125472111 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 176288125476711 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_noXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_noXrefs 176288125475511 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_noIntronsAlignmentUtilsTests.testAlignSequenceAs_withMapping_noIntrons 176288125472711 Nov 17:14:14 1PASS 0.0010.001  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 176288125476611 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testAddMappedPositions_withStopCodonAlignmentUtilsTests.testAddMappedPositions_withStopCodon 176288125471011 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_keepIntronGapsOnlyAlignmentUtilsTests.testAlignSequenceAs_keepIntronGapsOnly 176288125472611 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testExpandContext_annotationAlignmentUtilsTests.testExpandContext_annotation 176288125473611 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testShowOrHideSequenceAnnotationsAlignmentUtilsTests.testShowOrHideSequenceAnnotations 176288125476711 Nov 17:14:14 1PASS 0.0010.001  
AlignmentUtilsTests.testFindCdsPositionsAlignmentUtilsTests.testFindCdsPositions 176288125473811 Nov 17:14:14 1PASS 0.0010.001  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_prioritiseXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_prioritiseXrefs 176288125475611 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testAddReferenceContactMapAlignmentUtilsTests.testAddReferenceContactMap 176288125471311 Nov 17:14:14 1PASS 0.0020.002  
AlignmentUtilsTests.testAddReferenceAnnotationsAlignmentUtilsTests.testAddReferenceAnnotations 176288125471111 Nov 17:14:14 1PASS 0.0020.002  
AlignmentUtilsTests.testMakeCdsAlignmentAlignmentUtilsTests.testMakeCdsAlignment 176288125474611 Nov 17:14:14 1PASS 0.0020.002  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_withUnmappedProteinAlignmentUtilsTests.testAlignSequenceAs_withMapping_withUnmappedProtein 176288125472911 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testSecondaryStructureAnnotationColourAlignmentUtilsTests.testSecondaryStructureAnnotationColour 176288125476411 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testGetAlignmentAnnotationForSourceAlignmentUtilsTests.testGetAlignmentAnnotationForSource 176288125474011 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testAddMappedPositionsAlignmentUtilsTests.testAddMappedPositions 176288125470911 Nov 17:14:14 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignSequenceAs_withTrailingPeptideAlignmentUtilsTests.testAlignSequenceAs_withTrailingPeptide 176288125473011 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testMakeCdsAlignment_multipleProteinsAlignmentUtilsTests.testMakeCdsAlignment_multipleProteins 176288125475111 Nov 17:14:14 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignAs_alternateTranscriptsUngappedAlignmentUtilsTests.testAlignAs_alternateTranscriptsUngapped 176288125472211 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testMapCdnaToProtein_forSubsequenceAlignmentUtilsTests.testMapCdnaToProtein_forSubsequence 176288125475211 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testHaveCrossRefAlignmentUtilsTests.testHaveCrossRef 176288125474211 Nov 17:14:14 1PASS 0.0010.001  
AlignmentUtilsTests.testIsSSAnnotationPresentAlignmentUtilsTests.testIsSSAnnotationPresent 176288125474511 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testMakeCdsAlignment_alternativeTranscriptsAlignmentUtilsTests.testMakeCdsAlignment_alternativeTranscripts 176288125474911 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 176288125476511 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testAlignProteinAsDnaAlignmentUtilsTests.testAlignProteinAsDna 176288125472211 Nov 17:14:14 1PASS 0.0020.002  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_withIntronsAlignmentUtilsTests.testAlignSequenceAs_withMapping_withIntrons 176288125472811 Nov 17:14:14 1PASS 0.0010.001  
AlignmentUtilsTests.testHasCrossRefAlignmentUtilsTests.testHasCrossRef 176288125474211 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testGetSequencesByNameAlignmentUtilsTests.testGetSequencesByName 176288125474111 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testTransferFeaturesAlignmentUtilsTests.testTransferFeatures 176288125476811 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testMakeCdsAlignment_filterProductsAlignmentUtilsTests.testMakeCdsAlignment_filterProducts 176288125475011 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_mappedProteinProteinAlignmentUtilsTests.testAlignSequenceAs_mappedProteinProtein 176288125472711 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_withXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_withXrefs 176288125475811 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testAlignProteinAsDna_incompleteStartCodonAlignmentUtilsTests.testAlignProteinAsDna_incompleteStartCodon 176288125472511 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testAlignAsSameSequencesAlignmentUtilsTests.testAlignAsSameSequences 176288125471611 Nov 17:14:14 1PASS 0.0040.004  
AlignmentUtilsTests.testSecondaryStructureAnnotationColourAlignmentUtilsTests.testSecondaryStructureAnnotationColour 176288125476311 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_withStartAndStopCodonsAlignmentUtilsTests.testMapProteinAlignmentToCdna_withStartAndStopCodons 176288125475711 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testFindCdsForProtein_noUTRAlignmentUtilsTests.testFindCdsForProtein_noUTR 176288125473811 Nov 17:14:14 1PASS 0.00  
AlignmentUtilsTests.testExpandContextAlignmentUtilsTests.testExpandContext 176288125473011 Nov 17:14:14 1PASS 0.0050.005  
AlignmentUtilsTests.testTransferFeatures_withSelectAlignmentUtilsTests.testTransferFeatures_withSelect 176288125476911 Nov 17:14:14 1PASS 0.0010.001