Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
ChimeraXManager	39	5	4	0.00%	Show methods

Class ChimeraXManager

Class ChimeraXManager	Line # 39	Total Statements 5	Complexity 4	TOTAL Coverage 0.00%
ChimeraXManager(StructureManager)   ChimeraXManager(StructureManager)	4242	1.01	1.01	0.0 0.00%
isChimeraX() : boolean   isChimeraX() : boolean	4747	1.01	1.01	0.0 0.00%
getHttpRequestMethod() : String   getHttpRequestMethod() : String	5858	1.01	1.01	0.0 0.00%
addLaunchArguments(List<String>) : void   addLaunchArguments(List<String>) : void	6666	2.02	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.ext.rbvi.chimera;
22
23		import java.util.List;
24
25		import ext.edu.ucsf.rbvi.strucviz2.ChimeraManager;
26		import ext.edu.ucsf.rbvi.strucviz2.StructureManager;
27
28		/**
29		* A class to help Jalview start, stop and send commands to ChimeraX.
30		* <p>
31		* Much of the functionality is common with Chimera, so for convenience we
32		* extend ChimeraManager, however note this class is <em>not</em> based on the
33		* Cytoscape class at
34		* {@code https://github.com/RBVI/structureVizX/blob/master/src/main/java/edu/ucsf/rbvi/structureVizX/internal/model/ChimeraManager.java}.
35		*
36		* @author gmcarstairs
37		*
38		*/
		0% Uncovered Elements: 9 (9) Complexity: 4 Complexity Density: 0.8
39		public class ChimeraXManager extends ChimeraManager
40		{
41
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
42	0	public ChimeraXManager(StructureManager structureManager)...
43		{
44	0	super(structureManager);
45		}
46
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
47	0	public boolean isChimeraX()...
48		{
49	0	return true;
50		}
51
52		/**
53		* Returns "POST" as the HTTP request method to use for REST service calls to
54		* ChimeraX
55		*
56		* @return
57		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
58	0	protected String getHttpRequestMethod()...
59		{
60	0	return "GET";
61		}
62
63		/**
64		* Adds command-line arguments to start the REST server
65		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
66	0	protected void addLaunchArguments(List<String> args)...
67		{
68	0	args.add("--cmd");
69	0	args.add("remote rest start");
70		}
71
72		}