Class ScoreMatrixTest

Class	Tests	Fail	Error	Time (secs)	% Tests Success
ScoreMatrixTest	2222	22	00	0.074	0.9090909490.9%

Tests	Started	Status	Time (secs)	Message
ScoreMatrixTest.testComputePairwiseScoresScoreMatrixTest.testComputePairwiseScores	17622555153734 Nov 11:25:15	3FAIL	0.0350.035	expected [15.0] but found [0.0] expected [15.0] but found [0.0] java.lang.AssertionError: expected [15.0] but found [0.0] at org.testng.Assert.fail(Assert.java:94) at org.testng.Assert.failNotEquals(Assert.java:496) at org.testng.Assert.assertEquals(Assert.java:125) at org.testng.Assert.assertEquals(Assert.java:167) at jalview.analysis.scoremodels.ScoreMatrixTest.testComputePairwiseScores(ScoreMatrixTest.java:241) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:141) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:90) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:61) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:133) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:71) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74)
ScoreMatrixTest.testIsSymmetricScoreMatrixTest.testIsSymmetric	17622555154164 Nov 11:25:15	3FAIL	0.0120.012	expected [true] but found [false] expected [true] but found [false] java.lang.AssertionError: expected [true] but found [false] at org.testng.Assert.fail(Assert.java:94) at org.testng.Assert.failNotEquals(Assert.java:496) at org.testng.Assert.assertTrue(Assert.java:42) at org.testng.Assert.assertTrue(Assert.java:52) at jalview.analysis.scoremodels.ScoreMatrixTest.testIsSymmetric(ScoreMatrixTest.java:681) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:141) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:90) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:61) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:133) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:71) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74)
ScoreMatrixTest.testcomputeSimilarity_matchShortestSequenceScoreMatrixTest.testcomputeSimilarity_matchShortestSequence	17622555154554 Nov 11:25:15	1PASS	0.00
ScoreMatrixTest.testBuildSymbolIndexScoreMatrixTest.testBuildSymbolIndex	17622555153724 Nov 11:25:15	1PASS	0.00
ScoreMatrixTest.testGetPairwiseScoreScoreMatrixTest.testGetPairwiseScore	17622555154154 Nov 11:25:15	1PASS	0.00
ScoreMatrixTest.testGetMatrixIndexScoreMatrixTest.testGetMatrixIndex	17622555154144 Nov 11:25:15	1PASS	0.00
ScoreMatrixTest.testBuildSymbolIndex_nonAsciiScoreMatrixTest.testBuildSymbolIndex_nonAscii	17622555153724 Nov 11:25:15	1PASS	0.00
ScoreMatrixTest.testConstructor_matrixNotSquareScoreMatrixTest.testConstructor_matrixNotSquare	17622555154114 Nov 11:25:15	1PASS	0.00
ScoreMatrixTest.testOutputMatrix_roundTripScoreMatrixTest.testOutputMatrix_roundTrip	17622555154304 Nov 11:25:15	1PASS	0.0190.019
ScoreMatrixTest.testBlosum62_valuesScoreMatrixTest.testBlosum62_values	17622555153704 Nov 11:25:15	1PASS	0.0010.001
ScoreMatrixTest.testConstructor_matrixTooSmallScoreMatrixTest.testConstructor_matrixTooSmall	17622555154124 Nov 11:25:15	1PASS	0.00
ScoreMatrixTest.testGetSizeScoreMatrixTest.testGetSize	17622555154164 Nov 11:25:15	1PASS	0.00
ScoreMatrixTest.testEqualsAndHashCodeScoreMatrixTest.testEqualsAndHashCode	17622555154124 Nov 11:25:15	1PASS	0.0010.001
ScoreMatrixTest.testGetMatrixScoreMatrixTest.testGetMatrix	17622555154134 Nov 11:25:15	1PASS	0.00
ScoreMatrixTest.testGetMaximumScoreScoreMatrixTest.testGetMaximumScore	17622555154144 Nov 11:25:15	1PASS	0.00
ScoreMatrixTest.testSymmetricScoreMatrixTest.testSymmetric	17622555154504 Nov 11:25:15	1PASS	0.0040.004
ScoreMatrixTest.testOutputMatrix_htmlScoreMatrixTest.testOutputMatrix_html	17622555154294 Nov 11:25:15	1PASS	0.0010.001
ScoreMatrixTest.testConstructor_matrixTooBigScoreMatrixTest.testConstructor_matrixTooBig	17622555154114 Nov 11:25:15	1PASS	0.00
ScoreMatrixTest.testcomputeSimilarity_matchLongestSequenceScoreMatrixTest.testcomputeSimilarity_matchLongestSequence	17622555154544 Nov 11:25:15	1PASS	0.0010.001
ScoreMatrixTest.testConstructorScoreMatrixTest.testConstructor	17622555154104 Nov 11:25:15	1PASS	0.00
ScoreMatrixTest.testConstructor_gapDashScoreMatrixTest.testConstructor_gapDash	17622555154104 Nov 11:25:15	1PASS	0.00
ScoreMatrixTest.testGetMinimumScoreScoreMatrixTest.testGetMinimumScore	17622555154154 Nov 11:25:15	1PASS	0.00

Coverage Report

Class ScoreMatrixTest