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Coverage Report

Class AlignmentUtilsTests

 
AlignmentUtilsTests 5454 00 00 0.066
1.0100%
 
AlignmentUtilsTests.testIsSSAnnotationPresentAlignmentUtilsTests.testIsSSAnnotationPresent 17645951721031 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testIsSSAnnotationPresentAlignmentUtilsTests.testIsSSAnnotationPresent 17645951721041 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_withXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_withXrefs 17645951721191 Dec 13:19:32 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_withIntronsAlignmentUtilsTests.testAlignSequenceAs_withMapping_withIntrons 17645951720861 Dec 13:19:32 1PASS 0.0010.001  
AlignmentUtilsTests.testSecondaryStructureAnnotationColourAlignmentUtilsTests.testSecondaryStructureAnnotationColour 17645951721251 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testExpandContext_annotationAlignmentUtilsTests.testExpandContext_annotation 17645951720941 Dec 13:19:32 1PASS 0.0010.001  
AlignmentUtilsTests.testAddMappedPositions_withStopCodonAlignmentUtilsTests.testAddMappedPositions_withStopCodon 17645951720681 Dec 13:19:32 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignSequenceAs_keepIntronGapsOnlyAlignmentUtilsTests.testAlignSequenceAs_keepIntronGapsOnly 17645951720841 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testAlignAs_alternateTranscriptsUngappedAlignmentUtilsTests.testAlignAs_alternateTranscriptsUngapped 17645951720801 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testIsMappableAlignmentUtilsTests.testIsMappable 17645951721021 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testMakeCdsAlignmentAlignmentUtilsTests.testMakeCdsAlignment 17645951721061 Dec 13:19:32 1PASS 0.0020.002  
AlignmentUtilsTests.testMapCdsToProteinAlignmentUtilsTests.testMapCdsToProtein 17645951721151 Dec 13:19:32 1PASS 0.0010.001  
AlignmentUtilsTests.testTransferFeatures_withOmitAlignmentUtilsTests.testTransferFeatures_withOmit 17645951721311 Dec 13:19:32 1PASS 0.0010.001  
AlignmentUtilsTests.testExpandContextAlignmentUtilsTests.testExpandContext 17645951720891 Dec 13:19:32 1PASS 0.0050.005  
AlignmentUtilsTests.testShowOrHideSequenceAnnotationsAlignmentUtilsTests.testShowOrHideSequenceAnnotations 17645951721301 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testFindCdsPositionsAlignmentUtilsTests.testFindCdsPositions 17645951720971 Dec 13:19:32 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_noIntronsAlignmentUtilsTests.testAlignSequenceAs_withMapping_noIntrons 17645951720861 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_withStartAndStopCodonsAlignmentUtilsTests.testMapProteinAlignmentToCdna_withStartAndStopCodons 17645951721181 Dec 13:19:32 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignAsSameSequencesMultipleSubSeqAlignmentUtilsTests.testAlignAsSameSequencesMultipleSubSeq 17645951720791 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testFindCdsForProtein_noUTRAlignmentUtilsTests.testFindCdsForProtein_noUTR 17645951720961 Dec 13:19:32 1PASS 0.0010.001  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_prioritiseXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_prioritiseXrefs 17645951721181 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testSecondaryStructureAnnotationColourAlignmentUtilsTests.testSecondaryStructureAnnotationColour 17645951721261 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testAlignProteinAsDnaAlignmentUtilsTests.testAlignProteinAsDna 17645951720811 Dec 13:19:32 1PASS 0.0020.002  
AlignmentUtilsTests.testTransferFeaturesAlignmentUtilsTests.testTransferFeatures 17645951721301 Dec 13:19:32 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignProteinAsDna_incompleteStartCodonAlignmentUtilsTests.testAlignProteinAsDna_incompleteStartCodon 17645951720831 Dec 13:19:32 1PASS 0.0010.001  
AlignmentUtilsTests.testTranslatesAsAlignmentUtilsTests.testTranslatesAs 17645951721351 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testAddReferenceContactMapAlignmentUtilsTests.testAddReferenceContactMap 17645951720711 Dec 13:19:32 1PASS 0.0020.002  
AlignmentUtilsTests.testAddMappedPositionsAlignmentUtilsTests.testAddMappedPositions 17645951720671 Dec 13:19:32 1PASS 0.0010.001  
AlignmentUtilsTests.testIsSSAnnotationPresentAlignmentUtilsTests.testIsSSAnnotationPresent 17645951721051 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testMapCdnaToProtein_forSubsequenceAlignmentUtilsTests.testMapCdnaToProtein_forSubsequence 17645951721141 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_noXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_noXrefs 17645951721161 Dec 13:19:32 1PASS 0.0010.001  
AlignmentUtilsTests.testMakeCdsAlignment_alternativeTranscriptsAlignmentUtilsTests.testMakeCdsAlignment_alternativeTranscripts 17645951721091 Dec 13:19:32 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignAsSameSequencesAlignmentUtilsTests.testAlignAsSameSequences 17645951720741 Dec 13:19:32 1PASS 0.0040.004  
AlignmentUtilsTests.testSecondaryStructureAnnotationColourAlignmentUtilsTests.testSecondaryStructureAnnotationColour 17645951721241 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testHaveCrossRefAlignmentUtilsTests.testHaveCrossRef 17645951721021 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testAddReferenceAnnotationsAlignmentUtilsTests.testAddReferenceAnnotations 17645951720691 Dec 13:19:32 1PASS 0.0020.002  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 17645951721271 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_mappedProteinProteinAlignmentUtilsTests.testAlignSequenceAs_mappedProteinProtein 17645951720851 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testGetAlignmentAnnotationForSourceAlignmentUtilsTests.testGetAlignmentAnnotationForSource 17645951720991 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testa3mToMSAAlignmentUtilsTests.testa3mToMSA 17645951721361 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testFindCdsForProteinAlignmentUtilsTests.testFindCdsForProtein 17645951720951 Dec 13:19:32 1PASS 0.0010.001  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 17645951721291 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testHasCrossRefAlignmentUtilsTests.testHasCrossRef 17645951721011 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testA3mInsertShiftsAlignmentUtilsTests.testA3mInsertShifts 17645951720671 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testa3mToMSA_byfileAlignmentUtilsTests.testa3mToMSA_byfile 17645951721371 Dec 13:19:32 1PASS 0.030.03  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 17645951721281 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_withTrailingPeptideAlignmentUtilsTests.testAlignSequenceAs_withTrailingPeptide 17645951720881 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testMakeCdsAlignment_filterProductsAlignmentUtilsTests.testMakeCdsAlignment_filterProducts 17645951721111 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testGetSequencesByNameAlignmentUtilsTests.testGetSequencesByName 17645951721001 Dec 13:19:32 1PASS 0.00  
AlignmentUtilsTests.testTransferGeneLociAlignmentUtilsTests.testTransferGeneLoci 17645951721331 Dec 13:19:32 1PASS 0.0010.001  
AlignmentUtilsTests.testMakeCdsAlignment_multipleProteinsAlignmentUtilsTests.testMakeCdsAlignment_multipleProteins 17645951721121 Dec 13:19:32 1PASS 0.0010.001  
AlignmentUtilsTests.testTransferFeatures_withSelectAlignmentUtilsTests.testTransferFeatures_withSelect 17645951721321 Dec 13:19:32 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_withUnmappedProteinAlignmentUtilsTests.testAlignSequenceAs_withMapping_withUnmappedProtein 17645951720871 Dec 13:19:32 1PASS 0.0010.001  
AlignmentUtilsTests.testFindCdsPositions_fivePrimeIncompleteAlignmentUtilsTests.testFindCdsPositions_fivePrimeIncomplete 17645951720981 Dec 13:19:32 1PASS 0.00