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Coverage Report

Class AlignmentUtilsTests

 
AlignmentUtilsTests 5252 00 00 0.054
1.0100%
 
AlignmentUtilsTests.testAlignSequenceAs_mappedProteinProteinAlignmentUtilsTests.testAlignSequenceAs_mappedProteinProtein 17623486544015 Nov 13:17:34 1PASS 0.0030.003  
AlignmentUtilsTests.testIsSSAnnotationPresentAlignmentUtilsTests.testIsSSAnnotationPresent 17623486544425 Nov 13:17:34 1PASS 0.0010.001  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 17623486544665 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testExpandContextAlignmentUtilsTests.testExpandContext 17623486544145 Nov 13:17:34 1PASS 0.0190.019  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_withIntronsAlignmentUtilsTests.testAlignSequenceAs_withMapping_withIntrons 17623486544055 Nov 13:17:34 1PASS 0.0010.001  
AlignmentUtilsTests.testMapCdsToProteinAlignmentUtilsTests.testMapCdsToProtein 17623486544545 Nov 13:17:34 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_noIntronsAlignmentUtilsTests.testAlignSequenceAs_withMapping_noIntrons 17623486544055 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testMakeCdsAlignmentAlignmentUtilsTests.testMakeCdsAlignment 17623486544475 Nov 13:17:34 1PASS 0.0030.003  
AlignmentUtilsTests.testMakeCdsAlignment_multipleProteinsAlignmentUtilsTests.testMakeCdsAlignment_multipleProteins 17623486544525 Nov 13:17:34 1PASS 0.0010.001  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_noXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_noXrefs 17623486544565 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testTransferGeneLociAlignmentUtilsTests.testTransferGeneLoci 17623486544705 Nov 13:17:34 1PASS 0.0020.002  
AlignmentUtilsTests.testIsSSAnnotationPresentAlignmentUtilsTests.testIsSSAnnotationPresent 17623486544465 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testHasCrossRefAlignmentUtilsTests.testHasCrossRef 17623486544405 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testIsSSAnnotationPresentAlignmentUtilsTests.testIsSSAnnotationPresent 17623486544475 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testFindCdsPositionsAlignmentUtilsTests.testFindCdsPositions 17623486544375 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testAlignProteinAsDnaAlignmentUtilsTests.testAlignProteinAsDna 17623486543965 Nov 13:17:34 1PASS 0.0020.002  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_withUnmappedProteinAlignmentUtilsTests.testAlignSequenceAs_withMapping_withUnmappedProtein 17623486544065 Nov 13:17:34 1PASS 0.0010.001  
AlignmentUtilsTests.testAddReferenceContactMapAlignmentUtilsTests.testAddReferenceContactMap 17623486543865 Nov 13:17:34 1PASS 0.0020.002  
AlignmentUtilsTests.testShowOrHideSequenceAnnotationsAlignmentUtilsTests.testShowOrHideSequenceAnnotations 17623486544675 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testSecondaryStructureAnnotationColourAlignmentUtilsTests.testSecondaryStructureAnnotationColour 17623486544635 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testTranslatesAsAlignmentUtilsTests.testTranslatesAs 17623486544725 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testHaveCrossRefAlignmentUtilsTests.testHaveCrossRef 17623486544415 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 17623486544645 Nov 13:17:34 1PASS 0.0010.001  
AlignmentUtilsTests.testExpandContext_annotationAlignmentUtilsTests.testExpandContext_annotation 17623486544345 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testGetSequencesByNameAlignmentUtilsTests.testGetSequencesByName 17623486544395 Nov 13:17:34 1PASS 0.0010.001  
AlignmentUtilsTests.testSecondaryStructureAnnotationColourAlignmentUtilsTests.testSecondaryStructureAnnotationColour 17623486544645 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testFindCdsPositions_fivePrimeIncompleteAlignmentUtilsTests.testFindCdsPositions_fivePrimeIncomplete 17623486544385 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 17623486544675 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testTransferFeatures_withSelectAlignmentUtilsTests.testTransferFeatures_withSelect 17623486544695 Nov 13:17:34 1PASS 0.0010.001  
AlignmentUtilsTests.testAddMappedPositions_withStopCodonAlignmentUtilsTests.testAddMappedPositions_withStopCodon 17623486543845 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_keepIntronGapsOnlyAlignmentUtilsTests.testAlignSequenceAs_keepIntronGapsOnly 17623486544005 Nov 13:17:34 1PASS 0.0010.001  
AlignmentUtilsTests.testMakeCdsAlignment_alternativeTranscriptsAlignmentUtilsTests.testMakeCdsAlignment_alternativeTranscripts 17623486544505 Nov 13:17:34 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignSequenceAs_withTrailingPeptideAlignmentUtilsTests.testAlignSequenceAs_withTrailingPeptide 17623486544145 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testAddReferenceAnnotationsAlignmentUtilsTests.testAddReferenceAnnotations 17623486543845 Nov 13:17:34 1PASS 0.0020.002  
AlignmentUtilsTests.testAlignAs_alternateTranscriptsUngappedAlignmentUtilsTests.testAlignAs_alternateTranscriptsUngapped 17623486543955 Nov 13:17:34 1PASS 0.0010.001  
AlignmentUtilsTests.testSecondaryStructureAnnotationColourAlignmentUtilsTests.testSecondaryStructureAnnotationColour 17623486544625 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testAlignProteinAsDna_incompleteStartCodonAlignmentUtilsTests.testAlignProteinAsDna_incompleteStartCodon 17623486543995 Nov 13:17:34 1PASS 0.0010.001  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_withStartAndStopCodonsAlignmentUtilsTests.testMapProteinAlignmentToCdna_withStartAndStopCodons 17623486544575 Nov 13:17:34 1PASS 0.0010.001  
AlignmentUtilsTests.testFindCdsForProtein_noUTRAlignmentUtilsTests.testFindCdsForProtein_noUTR 17623486544365 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_withXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_withXrefs 17623486544585 Nov 13:17:34 1PASS 0.0010.001  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_prioritiseXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_prioritiseXrefs 17623486544575 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testMapCdnaToProtein_forSubsequenceAlignmentUtilsTests.testMapCdnaToProtein_forSubsequence 17623486544535 Nov 13:17:34 1PASS 0.0010.001  
AlignmentUtilsTests.testMakeCdsAlignment_filterProductsAlignmentUtilsTests.testMakeCdsAlignment_filterProducts 17623486544515 Nov 13:17:34 1PASS 0.0010.001  
AlignmentUtilsTests.testAddMappedPositionsAlignmentUtilsTests.testAddMappedPositions 17623486543835 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testAlignAsSameSequencesAlignmentUtilsTests.testAlignAsSameSequences 17623486543895 Nov 13:17:34 1PASS 0.0040.004  
AlignmentUtilsTests.testFindCdsForProteinAlignmentUtilsTests.testFindCdsForProtein 17623486544355 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testTransferFeaturesAlignmentUtilsTests.testTransferFeatures 17623486544685 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testAlignAsSameSequencesMultipleSubSeqAlignmentUtilsTests.testAlignAsSameSequencesMultipleSubSeq 17623486543945 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 17623486544655 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testTransferFeatures_withOmitAlignmentUtilsTests.testTransferFeatures_withOmit 17623486544695 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testIsMappableAlignmentUtilsTests.testIsMappable 17623486544425 Nov 13:17:34 1PASS 0.00  
AlignmentUtilsTests.testGetAlignmentAnnotationForSourceAlignmentUtilsTests.testGetAlignmentAnnotationForSource 17623486544385 Nov 13:17:34 1PASS 0.0010.001