Class jalview.ws2.actions.alignment.AlignmentActionListenerNotifiedTest
|
100%
successful |
Tests
- Standard error
Test | Duration | Result |
---|---|---|
allJobsStarted_taskStartedCalled | 0.045s | passed |
allJobsStarted_taskStatusChangedCalledWithReadyThenSubmitted | 0.007s | passed |
jobStatusChanged_subJobStatusChangedCalledWithJobStatus[0](SUBMITTED) | 0.102s | passed |
jobStatusChanged_subJobStatusChangedCalledWithJobStatus[1](QUEUED) | 0.102s | passed |
jobStatusChanged_subJobStatusChangedCalledWithJobStatus[2](RUNNING) | 0.102s | passed |
jobStatusChanged_subJobStatusChangedCalledWithJobStatus[3](COMPLETED) | 0.004s | passed |
jobStatusChanged_subJobStatusChangedCalledWithJobStatus[4](FAILED) | 0.004s | passed |
jobStatusChanged_subJobStatusChangedCalledWithJobStatus[5](CANCELLED) | 0.003s | passed |
jobStatusChanged_subJobStatusChangedCalledWithJobStatus[6](SERVER_ERROR) | 0.003s | passed |
jobStatusChanged_subJobStatusChangedCalledWithJobStatus[7](UNKNOWN) | 0.102s | passed |
jobStatusChanged_taskStatusChangedCalledWithJobStatus[0](SUBMITTED) | 0.101s | passed |
jobStatusChanged_taskStatusChangedCalledWithJobStatus[1](QUEUED) | 0.102s | passed |
jobStatusChanged_taskStatusChangedCalledWithJobStatus[2](RUNNING) | 0.102s | passed |
jobStatusChanged_taskStatusChangedCalledWithJobStatus[3](COMPLETED) | 0.003s | passed |
jobStatusChanged_taskStatusChangedCalledWithJobStatus[4](FAILED) | 0.002s | passed |
jobStatusChanged_taskStatusChangedCalledWithJobStatus[5](CANCELLED) | 0.005s | passed |
jobStatusChanged_taskStatusChangedCalledWithJobStatus[6](SERVER_ERROR) | 0.003s | passed |
jobStatusChanged_taskStatusChangedCalledWithJobStatus[7](UNKNOWN) | 0.102s | passed |
retrieveResult_verifySequencesAligned[0](>Seq 1/1-19 ----ASTVLITOPDCMMQEGGST- >Seq 2/1-16 -ASCGLITO------MMQEGGST- >Seq 3/1-14 AS--TVL--OPDTMMQEL------ , >Sequence0/1-19 ASTV-LITOPDCMMQEGGST---- >Sequence1/1-16 ASC-GLITO---MMQEGGST---- >Sequence2/1-14 ASTV-L--OPDTMMQE--L----- ) | 0.012s | passed |
submitSequences_submitGapsOff_verifySequencesSubmittedWithoutGaps[0](>Seq 1/1-19 ----ASTVLITOPDCMMQEGGST- >Seq 2/1-16 -ASCGLITO------MMQEGGST- >Seq 3/1-14 AS--TVL--OPDTMMQEL------ , >Sequence0/1-19 ASTV-LITOPDCMMQEGGST---- >Sequence1/1-16 ASC-GLITO---MMQEGGST---- >Sequence2/1-14 ASTV-L--OPDTMMQE--L----- ) | 0.003s | passed |
submitSequences_submitGapsOn_verifySequencesSubmittedWithGaps[0](>Seq 1/1-19 ----ASTVLITOPDCMMQEGGST- >Seq 2/1-16 -ASCGLITO------MMQEGGST- >Seq 3/1-14 AS--TVL--OPDTMMQEL------ , >Sequence0/1-19 ASTV-LITOPDCMMQEGGST---- >Sequence1/1-16 ASC-GLITO---MMQEGGST---- >Sequence2/1-14 ASTV-L--OPDTMMQE--L----- ) | 0.003s | passed |
submitSequences_verifySequenceNamesUniquified[0](>Seq 1/1-19 ----ASTVLITOPDCMMQEGGST- >Seq 2/1-16 -ASCGLITO------MMQEGGST- >Seq 3/1-14 AS--TVL--OPDTMMQEL------ , >Sequence0/1-19 ASTV-LITOPDCMMQEGGST---- >Sequence1/1-16 ASC-GLITO---MMQEGGST---- >Sequence2/1-14 ASTV-L--OPDTMMQE--L----- ) | 0.005s | passed |
INFO - starting alignment service mock:mock INFO - starting alignment service mock:mock INFO - starting alignment service mock:mock INFO - starting alignment service mock:mock INFO - starting alignment service mock:mock INFO - starting alignment service mock:mock INFO - starting alignment service mock:mock INFO - starting alignment service mock:mock INFO - starting alignment service mock:mock INFO - starting alignment service mock:mock INFO - starting alignment service mock:mock INFO - starting alignment service mock:mock INFO - starting alignment service mock:mock INFO - starting alignment service mock:mock INFO - starting alignment service mock:mock INFO - starting alignment service mock:mock ERROR - Exception when trying to start Rest Job. java.lang.NullPointerException: null at jalview.ws.rest.RestJobThread.doPost(RestJobThread.java:202) ~[clover-classes/:?] at jalview.ws.rest.RestJobThread.StartJob(RestJobThread.java:466) [clover-classes/:?] at jalview.ws.AWSThread$1.actionPerformed(AWSThread.java:133) [clover-classes/:?] at javax.swing.Timer.fireActionPerformed(Timer.java:317) [?:?] at javax.swing.Timer$DoPostEvent.run(Timer.java:249) [?:?] at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313) [?:?] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770) [?:?] at java.awt.EventQueue$4.run(EventQueue.java:721) [?:?] at java.awt.EventQueue$4.run(EventQueue.java:715) [?:?] at java.security.AccessController.doPrivileged(Native Method) ~[?:?] at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85) [?:?] at java.awt.EventQueue.dispatchEvent(EventQueue.java:740) [?:?] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203) [?:?] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124) [?:?] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113) [?:?] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109) [?:?] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) [?:?] at java.awt.EventDispatchThread.run(EventDispatchThread.java:90) [?:?] Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException at jalview.ws.JobStateSummary.updateJobPanelState(JobStateSummary.java:118) at jalview.ws.AWSThread$1.actionPerformed(AWSThread.java:183) at java.desktop/javax.swing.Timer.fireActionPerformed(Timer.java:317) at java.desktop/javax.swing.Timer$DoPostEvent.run(Timer.java:249) at java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313) at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770) at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721) at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715) at java.base/java.security.AccessController.doPrivileged(Native Method) at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85) at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740) at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203) at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124) at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113) at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109) at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90) INFO - starting alignment service mock:mock INFO - starting alignment service mock:mock INFO - starting alignment service mock:mock INFO - starting alignment service mock:mock INFO - starting alignment service mock:mock INFO - starting alignment service mock:mock