Class jalview.ws2.actions.alignment.AlignmentActionListenerNotifiedTest

all > jalview.ws2.actions.alignment > AlignmentActionListenerNotifiedTest

tests

failures

ignored

0.917s

duration

100%

successful

Tests
Standard error

Test	Duration	Result
allJobsStarted_taskStartedCalled	0.045s	passed
allJobsStarted_taskStatusChangedCalledWithReadyThenSubmitted	0.007s	passed
jobStatusChanged_subJobStatusChangedCalledWithJobStatus[0](SUBMITTED)	0.102s	passed
jobStatusChanged_subJobStatusChangedCalledWithJobStatus[1](QUEUED)	0.102s	passed
jobStatusChanged_subJobStatusChangedCalledWithJobStatus[2](RUNNING)	0.102s	passed
jobStatusChanged_subJobStatusChangedCalledWithJobStatus[3](COMPLETED)	0.004s	passed
jobStatusChanged_subJobStatusChangedCalledWithJobStatus[4](FAILED)	0.004s	passed
jobStatusChanged_subJobStatusChangedCalledWithJobStatus[5](CANCELLED)	0.003s	passed
jobStatusChanged_subJobStatusChangedCalledWithJobStatus[6](SERVER_ERROR)	0.003s	passed
jobStatusChanged_subJobStatusChangedCalledWithJobStatus[7](UNKNOWN)	0.102s	passed
jobStatusChanged_taskStatusChangedCalledWithJobStatus[0](SUBMITTED)	0.101s	passed
jobStatusChanged_taskStatusChangedCalledWithJobStatus[1](QUEUED)	0.102s	passed
jobStatusChanged_taskStatusChangedCalledWithJobStatus[2](RUNNING)	0.102s	passed
jobStatusChanged_taskStatusChangedCalledWithJobStatus[3](COMPLETED)	0.003s	passed
jobStatusChanged_taskStatusChangedCalledWithJobStatus[4](FAILED)	0.002s	passed
jobStatusChanged_taskStatusChangedCalledWithJobStatus[5](CANCELLED)	0.005s	passed
jobStatusChanged_taskStatusChangedCalledWithJobStatus[6](SERVER_ERROR)	0.003s	passed
jobStatusChanged_taskStatusChangedCalledWithJobStatus[7](UNKNOWN)	0.102s	passed
retrieveResult_verifySequencesAligned[0](>Seq 1/1-19 ----ASTVLITOPDCMMQEGGST- >Seq 2/1-16 -ASCGLITO------MMQEGGST- >Seq 3/1-14 AS--TVL--OPDTMMQEL------ , >Sequence0/1-19 ASTV-LITOPDCMMQEGGST---- >Sequence1/1-16 ASC-GLITO---MMQEGGST---- >Sequence2/1-14 ASTV-L--OPDTMMQE--L----- )	0.012s	passed
submitSequences_submitGapsOff_verifySequencesSubmittedWithoutGaps[0](>Seq 1/1-19 ----ASTVLITOPDCMMQEGGST- >Seq 2/1-16 -ASCGLITO------MMQEGGST- >Seq 3/1-14 AS--TVL--OPDTMMQEL------ , >Sequence0/1-19 ASTV-LITOPDCMMQEGGST---- >Sequence1/1-16 ASC-GLITO---MMQEGGST---- >Sequence2/1-14 ASTV-L--OPDTMMQE--L----- )	0.003s	passed
submitSequences_submitGapsOn_verifySequencesSubmittedWithGaps[0](>Seq 1/1-19 ----ASTVLITOPDCMMQEGGST- >Seq 2/1-16 -ASCGLITO------MMQEGGST- >Seq 3/1-14 AS--TVL--OPDTMMQEL------ , >Sequence0/1-19 ASTV-LITOPDCMMQEGGST---- >Sequence1/1-16 ASC-GLITO---MMQEGGST---- >Sequence2/1-14 ASTV-L--OPDTMMQE--L----- )	0.003s	passed
submitSequences_verifySequenceNamesUniquified[0](>Seq 1/1-19 ----ASTVLITOPDCMMQEGGST- >Seq 2/1-16 -ASCGLITO------MMQEGGST- >Seq 3/1-14 AS--TVL--OPDTMMQEL------ , >Sequence0/1-19 ASTV-LITOPDCMMQEGGST---- >Sequence1/1-16 ASC-GLITO---MMQEGGST---- >Sequence2/1-14 ASTV-L--OPDTMMQE--L----- )	0.005s	passed

INFO - starting alignment service mock:mock
INFO - starting alignment service mock:mock
INFO - starting alignment service mock:mock
INFO - starting alignment service mock:mock
INFO - starting alignment service mock:mock
INFO - starting alignment service mock:mock
INFO - starting alignment service mock:mock
INFO - starting alignment service mock:mock
INFO - starting alignment service mock:mock
INFO - starting alignment service mock:mock
INFO - starting alignment service mock:mock
INFO - starting alignment service mock:mock
INFO - starting alignment service mock:mock
INFO - starting alignment service mock:mock
INFO - starting alignment service mock:mock
INFO - starting alignment service mock:mock
ERROR - Exception when trying to start Rest Job.
java.lang.NullPointerException: null
	at jalview.ws.rest.RestJobThread.doPost(RestJobThread.java:202) ~[clover-classes/:?]
	at jalview.ws.rest.RestJobThread.StartJob(RestJobThread.java:466) [clover-classes/:?]
	at jalview.ws.AWSThread$1.actionPerformed(AWSThread.java:133) [clover-classes/:?]
	at javax.swing.Timer.fireActionPerformed(Timer.java:317) [?:?]
	at javax.swing.Timer$DoPostEvent.run(Timer.java:249) [?:?]
	at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313) [?:?]
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770) [?:?]
	at java.awt.EventQueue$4.run(EventQueue.java:721) [?:?]
	at java.awt.EventQueue$4.run(EventQueue.java:715) [?:?]
	at java.security.AccessController.doPrivileged(Native Method) ~[?:?]
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85) [?:?]
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:740) [?:?]
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203) [?:?]
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124) [?:?]
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113) [?:?]
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109) [?:?]
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) [?:?]
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:90) [?:?]
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
	at jalview.ws.JobStateSummary.updateJobPanelState(JobStateSummary.java:118)
	at jalview.ws.AWSThread$1.actionPerformed(AWSThread.java:183)
	at java.desktop/javax.swing.Timer.fireActionPerformed(Timer.java:317)
	at java.desktop/javax.swing.Timer$DoPostEvent.run(Timer.java:249)
	at java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
	at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
	at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
	at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
	at java.base/java.security.AccessController.doPrivileged(Native Method)
	at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
	at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
	at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
	at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
	at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
	at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
	at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
	at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
INFO - starting alignment service mock:mock
INFO - starting alignment service mock:mock
INFO - starting alignment service mock:mock
INFO - starting alignment service mock:mock
INFO - starting alignment service mock:mock
INFO - starting alignment service mock:mock

Class jalview.ws2.actions.alignment.AlignmentActionListenerNotifiedTest

Tests