Class jalview.schemes.AnnotationColourGradientTest

all > jalview.schemes > AnnotationColourGradientTest
7

tests
0

failures
0

ignored
0.004s

duration
100%

successful
Test Duration Result
testFindColour_aboveThreshold 0.001s passed
testFindColour_belowThreshold 0s passed
testFindColour_noThreshold 0.001s passed
testFindColour_originalColours 0.001s passed
testShadeCalculation_aboveThreshold 0s passed
testShadeCalculation_belowThreshold 0s passed
testShadeCalculation_noThreshold 0.001s passed 
Attempting to connect with TcoffeeWS...

INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
	at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
	at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
	at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
	at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
	at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
	at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
	at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
	at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
	at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
	at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
	at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
	at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
	at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
	at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
	at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
	at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
	at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
	at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
	at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
	at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
	at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
	at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
	at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
	at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
	at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
	at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
	at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
	at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
	at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
	at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
	at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
	at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
	at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
	at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
	at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
	at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
	at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
	at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
	at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
	at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
	at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
	at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
	at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
	at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
	at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
	at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
	at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
	at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
	at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
	at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
	at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
	at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
	at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
	at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
	at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
	at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
	at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
	at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
	at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
	at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
	at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
	at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
	at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
	at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
	at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
	at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
	at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
	at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
	at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
	at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
	at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
	at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
	at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
	at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
	at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
	at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
	at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
	at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
	at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
	at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
	at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
	at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
	at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
	at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
	at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
	at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
	at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
	at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
	at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
	at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
	at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
	at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
	at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
	at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
	at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
	at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
	at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
	at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
	at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
	at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
	at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
	at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
	at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
	at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
	at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
	at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
	at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
	at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
	at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
	at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
	at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
	at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
	at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
	at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
	at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
	at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
	at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
	at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
	at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
	at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
	at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
	at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
	at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
	at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
	at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
	at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
	at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
	at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
	at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
	at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
	at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
	at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
	at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
	at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
	at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
	at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
	at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
	at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
	at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
	at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
	at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
	at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
	at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
	at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
	at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
	at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]