INFO - Loaded Sequence Ontology from so-xp-simple.obo.zip (18ms)
INFO - Discovering jws1 services
Could not load jar:file:/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB665-JOB1/build/clover/clover-classes/!/.build_properties
INFO - Reloading services for jalview.ws2.client.slivka.SlivkaWSDiscoverer
INFO - Reloading services for jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Fetching list of services from https://www.ebi.ac.uk/Tools/services/rest/hmmer3_phmmer/
INFO - Fetching list of services from https://www.compbio.dundee.ac.uk/slivka/
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Feb 28, 2025 2:55:12 PM compbio.ws.client.Jws2Client connectToRegistry
INFO: Connected to RegistryWS successfully!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Feb 28, 2025 2:55:12 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Warning - overwriting a sequenceSetId for a viewport!
INFO - Reloading services for jalview.ws2.client.jpred4.JPred4WSDiscoverer
INFO - Fetching list of services from https://www.compbio.dundee.ac.uk/jpred4/
Feb 28, 2025 2:55:12 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Feb 28, 2025 2:55:12 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
Feb 28, 2025 2:55:12 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
Warning - overwriting a sequenceSetId for a viewport!
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
INFO - Building web services menu for jobs dispatcher
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
INFO - Building web services menu for jpred4
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
INFO - Rebuiling WS menu
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
INFO - Building web service menu for slivka
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
INFO - Building web services menu for jobs dispatcher
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
INFO - Building web services menu for jpred4
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
INFO - Building web services menu for jobs dispatcher
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
INFO - Building web services menu for jpred4
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
WARN - java.lang.NullPointerException
java.lang.NullPointerException: null
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172) ~[clover-classes/:?]
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110) ~[clover-classes/:?]
at jalview.gui.AlignFrame.lambda$new$1(AlignFrame.java:986) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.fireServicesChanged(AbstractWebServiceDiscoverer.java:199) ~[clover-classes/:?]
at jalview.ws2.client.api.AbstractWebServiceDiscoverer.lambda$startDiscoverer$1(AbstractWebServiceDiscoverer.java:178) ~[clover-classes/:?]
at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:930) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:907) [?:?]
at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506) [?:?]
at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:610) [?:?]
at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:910) [?:?]
at java.util.concurrent.CompletableFuture$Completion.exec(CompletableFuture.java:479) [?:?]
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290) [?:?]
at java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020) [?:?]
at java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656) [?:?]
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594) [?:?]
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183) [?:?]
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
Feb 28, 2025 2:55:13 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Warning - overwriting a sequenceSetId for a viewport!
Feb 28, 2025 2:55:13 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Feb 28, 2025 2:55:13 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
Feb 28, 2025 2:55:13 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
Feb 28, 2025 2:55:13 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
Warning - overwriting a sequenceSetId for a viewport!
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Feb 28, 2025 2:55:13 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
Feb 28, 2025 2:55:13 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
INFO - Building web services menu for jpred4
Feb 28, 2025 2:55:13 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
java.lang.NullPointerException
at jalview.gui.TreeCanvas.<init>(TreeCanvas.java:132)
at jalview.gui.TreePanel.initTreePanel(TreePanel.java:144)
at jalview.gui.TreePanel.<init>(TreePanel.java:122)
at jalview.gui.AlignFrame.showNewickTree(AlignFrame.java:4659)
at jalview.gui.AlignFrame.showNewickTree(AlignFrame.java:4625)
at jalview.project.Jalview2XML.loadTrees(Jalview2XML.java:4412)
at jalview.project.Jalview2XML$9.run(Jalview2XML.java:4225)
at java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
WARN - There was a problem recovering stored Newick tree:
(((FER1_MAIZE:35.666668,(FER1_ARATH:14.25,(FER3_RAPSA:10.5,FER2_ARATH:10.5):3.75):21.416668):7.083332,(FER1_MESCR:32.5,FER1_SPIOL:32.5):10.25):0.77083206,((FER_CAPAA:17.5,FER1_SOLLC:17.5):18.0,(Q7XA98_TRIPR:26.0,FER1_PEA:26.0):9.5):8.020832);
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440)
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180)
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172)
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110)
at jalview.gui.AlignFrame.lambda$buildWebServicesMenu$8(AlignFrame.java:4704)
at java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440)
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180)
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172)
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110)
at jalview.gui.AlignFrame.lambda$buildWebServicesMenu$8(AlignFrame.java:4704)
at java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at jalview.gui.AlignmentPanel.getStructureSelectionManager(AlignmentPanel.java:1594)
at jalview.gui.AppJmol.<init>(AppJmol.java:110)
at jalview.gui.StructureViewer.createView(StructureViewer.java:377)
at jalview.project.Jalview2XML$13.run(Jalview2XML.java:6351)
at java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at jalview.gui.AlignmentPanel.getStructureSelectionManager(AlignmentPanel.java:1594)
at jalview.gui.AppJmol.<init>(AppJmol.java:110)
at jalview.gui.StructureViewer.createView(StructureViewer.java:377)
at jalview.project.Jalview2XML$13.run(Jalview2XML.java:6351)
at java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at jalview.gui.AlignmentPanel.getStructureSelectionManager(AlignmentPanel.java:1594)
at jalview.gui.AppJmol.<init>(AppJmol.java:110)
at jalview.gui.StructureViewer.createView(StructureViewer.java:377)
at jalview.project.Jalview2XML$13.run(Jalview2XML.java:6351)
at java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at jalview.gui.AlignmentPanel.getStructureSelectionManager(AlignmentPanel.java:1594)
at jalview.gui.AppJmol.<init>(AppJmol.java:110)
at jalview.gui.StructureViewer.createView(StructureViewer.java:377)
at jalview.project.Jalview2XML$13.run(Jalview2XML.java:6351)
at java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
Feb 28, 2025 2:55:13 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at jalview.gui.AlignmentPanel.getStructureSelectionManager(AlignmentPanel.java:1594)
at jalview.gui.AppJmol.<init>(AppJmol.java:110)
at jalview.gui.StructureViewer.createView(StructureViewer.java:377)
at jalview.project.Jalview2XML$13.run(Jalview2XML.java:6351)
at java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
Warning - overwriting a sequenceSetId for a viewport!
Feb 28, 2025 2:55:13 PM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Allocating Jmol Viewer:
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Squashed Jmol callback handler error:
java.lang.NullPointerException
at jalview.structures.models.AAStructureBindingModel.getFeatureRenderer(AAStructureBindingModel.java:1241)
at jalview.ext.jmol.JalviewJmolBinding.notifyFileLoaded(JalviewJmolBinding.java:774)
at jalview.ext.jmol.JalviewJmolBinding.processCallback(JalviewJmolBinding.java:534)
at jalview.ext.jmol.JalviewJmolBinding$1.run(JalviewJmolBinding.java:516)
at java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
Unhandled callback MEASURE [[FES]1602.S1 #736, [THR]89.OG1 #665, 1.328 nm]
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440)
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180)
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172)
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110)
at jalview.gui.AlignFrame.lambda$buildWebServicesMenu$8(AlignFrame.java:4704)
at java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
java.lang.NullPointerException
at jalview.gui.TreeCanvas.<init>(TreeCanvas.java:132)
at jalview.gui.TreePanel.initTreePanel(TreePanel.java:144)
at jalview.gui.TreePanel.<init>(TreePanel.java:122)
at jalview.gui.AlignFrame.showNewickTree(AlignFrame.java:4659)
at jalview.gui.AlignFrame.showNewickTree(AlignFrame.java:4625)
at jalview.project.Jalview2XML.loadTrees(Jalview2XML.java:4412)
at jalview.project.Jalview2XML$9.run(Jalview2XML.java:4225)
at java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
WARN - There was a problem recovering stored Newick tree:
(((FER1_MAIZE:35.666668,(FER1_ARATH:14.25,(FER3_RAPSA:10.5,FER2_ARATH:10.5):3.75):21.416668):7.083332,(FER1_MESCR:32.5,FER1_SPIOL:32.5):10.25):0.77083206,((FER_CAPAA:17.5,FER1_SOLLC:17.5):18.0,(Q7XA98_TRIPR:26.0,FER1_PEA:26.0):9.5):8.020832);
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440)
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180)
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172)
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110)
at jalview.gui.AlignFrame.lambda$buildWebServicesMenu$8(AlignFrame.java:4704)
at java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440)
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180)
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172)
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110)
at jalview.gui.AlignFrame.lambda$buildWebServicesMenu$8(AlignFrame.java:4704)
at java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
java.lang.NullPointerException
at jalview.project.Jalview2XML.storeAlignmentAnnotation(Jalview2XML.java:2399)
at jalview.project.Jalview2XML.saveState(Jalview2XML.java:1380)
at jalview.project.Jalview2XML.saveState(Jalview2XML.java:884)
at jalview.project.Jalview2XML.saveAllFrames(Jalview2XML.java:710)
at jalview.project.Jalview2XML.saveAlignment(Jalview2XML.java:815)
at jalview.gui.AlignFrame.saveAlignment(AlignFrame.java:1697)
at jalview.project.Jalview2xmlTests.__CLR4_4_1i97w87451j(Jalview2xmlTests.java:222)
at jalview.project.Jalview2xmlTests.testColourByAnnotScores(Jalview2xmlTests.java:192)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:139)
at org.testng.internal.invokers.TestInvoker.invokeMethod(TestInvoker.java:677)
at org.testng.internal.invokers.TestInvoker.invokeTestMethod(TestInvoker.java:221)
at org.testng.internal.invokers.MethodRunner.runInSequence(MethodRunner.java:50)
at org.testng.internal.invokers.TestInvoker$MethodInvocationAgent.invoke(TestInvoker.java:969)
at org.testng.internal.invokers.TestInvoker.invokeTestMethods(TestInvoker.java:194)
at org.testng.internal.invokers.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:148)
at org.testng.internal.invokers.TestMethodWorker.run(TestMethodWorker.java:128)
at java.base/java.util.ArrayList.forEach(ArrayList.java:1541)
at org.testng.TestRunner.privateRun(TestRunner.java:829)
at org.testng.TestRunner.run(TestRunner.java:602)
at org.testng.SuiteRunner.runTest(SuiteRunner.java:437)
at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:431)
at org.testng.SuiteRunner.privateRun(SuiteRunner.java:391)
at org.testng.SuiteRunner.run(SuiteRunner.java:330)
at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52)
at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:95)
at org.testng.TestNG.runSuitesSequentially(TestNG.java:1256)
at org.testng.TestNG.runSuitesLocally(TestNG.java:1176)
at org.testng.TestNG.runSuites(TestNG.java:1099)
at org.testng.TestNG.run(TestNG.java:1067)
at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:141)
at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:90)
at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:61)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36)
at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33)
at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94)
at com.sun.proxy.$Proxy2.stop(Unknown Source)
at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193)
at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129)
at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100)
at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60)
at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56)
at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:133)
at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:71)
at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69)
at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74)
java.lang.NullPointerException
at jalview.gui.AppJmolBinding.releaseReferences(AppJmolBinding.java:175)
at jalview.structure.StructureSelectionManager.removeStructureViewerListener(StructureSelectionManager.java:894)
at jalview.gui.AlignmentPanel.closePanel(AlignmentPanel.java:1492)
at jalview.gui.AlignFrame.closeMenuItem_actionPerformed(AlignFrame.java:2024)
at jalview.gui.AlignFrame$6.internalFrameClosed(AlignFrame.java:1035)
at java.desktop/javax.swing.JInternalFrame.fireInternalFrameEvent(JInternalFrame.java:1541)
at java.desktop/javax.swing.JInternalFrame.dispose(JInternalFrame.java:1767)
at java.desktop/javax.swing.JInternalFrame.setClosed(JInternalFrame.java:807)
at jalview.gui.AlignFrame.closeMenuItem_actionPerformed(AlignFrame.java:2044)
at jalview.project.Jalview2xmlTests.__CLR4_4_1i97w87451j(Jalview2xmlTests.java:225)
at jalview.project.Jalview2xmlTests.testColourByAnnotScores(Jalview2xmlTests.java:192)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:139)
at org.testng.internal.invokers.TestInvoker.invokeMethod(TestInvoker.java:677)
at org.testng.internal.invokers.TestInvoker.invokeTestMethod(TestInvoker.java:221)
at org.testng.internal.invokers.MethodRunner.runInSequence(MethodRunner.java:50)
at org.testng.internal.invokers.TestInvoker$MethodInvocationAgent.invoke(TestInvoker.java:969)
at org.testng.internal.invokers.TestInvoker.invokeTestMethods(TestInvoker.java:194)
at org.testng.internal.invokers.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:148)
at org.testng.internal.invokers.TestMethodWorker.run(TestMethodWorker.java:128)
at java.base/java.util.ArrayList.forEach(ArrayList.java:1541)
at org.testng.TestRunner.privateRun(TestRunner.java:829)
at org.testng.TestRunner.run(TestRunner.java:602)
at org.testng.SuiteRunner.runTest(SuiteRunner.java:437)
at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:431)
at org.testng.SuiteRunner.privateRun(SuiteRunner.java:391)
at org.testng.SuiteRunner.run(SuiteRunner.java:330)
at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52)
at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:95)
at org.testng.TestNG.runSuitesSequentially(TestNG.java:1256)
at org.testng.TestNG.runSuitesLocally(TestNG.java:1176)
at org.testng.TestNG.runSuites(TestNG.java:1099)
at org.testng.TestNG.run(TestNG.java:1067)
at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:141)
at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:90)
at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:61)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36)
at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33)
at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94)
at com.sun.proxy.$Proxy2.stop(Unknown Source)
at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193)
at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129)
at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100)
at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60)
at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56)
at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:133)
at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:71)
at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69)
at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74)
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at jalview.gui.AppJmolBinding$1.run(AppJmolBinding.java:115)
at java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at jalview.gui.AppJmolBinding$1.run(AppJmolBinding.java:115)
at java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at jalview.gui.AlignmentPanel.getStructureSelectionManager(AlignmentPanel.java:1594)
at jalview.gui.AppJmol.<init>(AppJmol.java:110)
at jalview.gui.StructureViewer.createView(StructureViewer.java:377)
at jalview.project.Jalview2XML$13.run(Jalview2XML.java:6351)
at java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at jalview.gui.AlignmentPanel.getStructureSelectionManager(AlignmentPanel.java:1594)
at jalview.gui.AppJmol.<init>(AppJmol.java:110)
at jalview.gui.StructureViewer.createView(StructureViewer.java:377)
at jalview.project.Jalview2XML$13.run(Jalview2XML.java:6351)
at java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at jalview.gui.AlignmentPanel.getStructureSelectionManager(AlignmentPanel.java:1594)
at jalview.gui.AppJmol.<init>(AppJmol.java:110)
at jalview.gui.StructureViewer.createView(StructureViewer.java:377)
at jalview.project.Jalview2XML$13.run(Jalview2XML.java:6351)
at java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
Warning - overwriting a sequenceSetId for a viewport!
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Allocating Jmol Viewer:
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Warning - overwriting a sequenceSetId for a viewport!
Unhandled callback MEASURE [[FES]1602.S1 #736, [THR]89.OG1 #665, 1.328 nm]
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at jalview.ws2.gui.WebServicesMenuManager.isActionEnabled(WebServicesMenuManager.java:440)
at jalview.ws2.gui.WebServicesMenuManager.addEntriesForAction(WebServicesMenuManager.java:180)
at jalview.ws2.gui.WebServicesMenuManager.addOneshotEntries(WebServicesMenuManager.java:172)
at jalview.ws2.gui.WebServicesMenuManager.setServices(WebServicesMenuManager.java:110)
at jalview.gui.AlignFrame.lambda$buildWebServicesMenu$8(AlignFrame.java:4704)
at java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
Assuming project file with null is compatible with Jalview version null
Assuming project file with null is compatible with Jalview version 2.8.3
Assuming project file with 2.8.3 is compatible with Jalview version null
Assuming project file with Development Build is compatible with Jalview version null
Assuming project file with DEVELOPMENT BUILD is compatible with Jalview version null
Assuming project file with Development Build is compatible with Jalview version 2.8.3
Assuming project file with Test is compatible with Jalview version null
Assuming project file with TEST is compatible with Jalview version null
Assuming project file with Test is compatible with Jalview version 2.8.3
Assuming project file with Automated Build is compatible with Jalview version null
Assuming project file with Automated Build is compatible with Jalview version 2.8.3
Assuming project file with AUTOMATED BUILD is compatible with Jalview version 2.8.3
Invalid version format found: For input string: "3B1"
Invalid version format found: For input string: "3B1"
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at jalview.gui.AlignmentPanel.getStructureSelectionManager(AlignmentPanel.java:1594)
at jalview.gui.AppJmol.<init>(AppJmol.java:110)
at jalview.gui.StructureViewer.createView(StructureViewer.java:377)
at jalview.project.Jalview2XML$13.run(Jalview2XML.java:6351)
at java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
DEBUG Notice: Merged dataset sequence (if you see this often, post at http://issues.jalview.org/browse/JAL-1474)
DEBUG Notice: Merged dataset sequence (if you see this often, post at http://issues.jalview.org/browse/JAL-1474)
DEBUG Notice: Merged dataset sequence (if you see this often, post at http://issues.jalview.org/browse/JAL-1474)
DEBUG Notice: Merged dataset sequence (if you see this often, post at http://issues.jalview.org/browse/JAL-1474)
DEBUG Notice: Merged dataset sequence (if you see this often, post at http://issues.jalview.org/browse/JAL-1474)
DEBUG Notice: Merged dataset sequence (if you see this often, post at http://issues.jalview.org/browse/JAL-1474)
DEBUG Notice: Merged dataset sequence (if you see this often, post at http://issues.jalview.org/browse/JAL-1474)
DEBUG Notice: Merged dataset sequence (if you see this often, post at http://issues.jalview.org/browse/JAL-1474)
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
Warning - overwriting a sequenceSetId for a viewport!
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
Warning - overwriting a sequenceSetId for a viewport!
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
Warning - overwriting a sequenceSetId for a viewport!
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
Warning - overwriting a sequenceSetId for a viewport!
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Exception in thread "AWT-EventQueue-0" java.lang.ArrayIndexOutOfBoundsException: Index 2 out of bounds for length 2
at java.desktop/javax.swing.plaf.basic.BasicTabbedPaneUI.paintTabArea(BasicTabbedPaneUI.java:897)
at java.desktop/javax.swing.plaf.basic.BasicTabbedPaneUI.paint(BasicTabbedPaneUI.java:860)
at java.desktop/javax.swing.plaf.metal.MetalTabbedPaneUI.paint(MetalTabbedPaneUI.java:933)
at java.desktop/javax.swing.plaf.metal.MetalTabbedPaneUI.update(MetalTabbedPaneUI.java:814)
at java.desktop/javax.swing.JComponent.paintComponent(JComponent.java:797)
at java.desktop/javax.swing.JComponent.paint(JComponent.java:1074)
at java.desktop/javax.swing.JComponent.paintChildren(JComponent.java:907)
at java.desktop/javax.swing.JComponent.paint(JComponent.java:1083)
at java.desktop/javax.swing.JComponent.paintChildren(JComponent.java:907)
at java.desktop/javax.swing.JComponent.paint(JComponent.java:1083)
at java.desktop/javax.swing.JLayeredPane.paint(JLayeredPane.java:590)
at java.desktop/javax.swing.JComponent.paintChildren(JComponent.java:907)
at java.desktop/javax.swing.JComponent.paint(JComponent.java:1083)
at java.desktop/javax.swing.JComponent.paintChildren(JComponent.java:907)
at java.desktop/javax.swing.JComponent.paint(JComponent.java:1083)
at java.desktop/javax.swing.JComponent.paintChildren(JComponent.java:907)
at java.desktop/javax.swing.JComponent.paint(JComponent.java:1083)
at java.desktop/javax.swing.JLayeredPane.paint(JLayeredPane.java:590)
at java.desktop/javax.swing.JComponent.paintToOffscreen(JComponent.java:5255)
at java.desktop/javax.swing.RepaintManager$PaintManager.paintDoubleBufferedImpl(RepaintManager.java:1643)
at java.desktop/javax.swing.RepaintManager$PaintManager.paintDoubleBuffered(RepaintManager.java:1618)
at java.desktop/javax.swing.RepaintManager$PaintManager.paint(RepaintManager.java:1556)
at java.desktop/javax.swing.BufferStrategyPaintManager.paint(BufferStrategyPaintManager.java:271)
at java.desktop/javax.swing.RepaintManager.paint(RepaintManager.java:1323)
at java.desktop/javax.swing.JComponent._paintImmediately(JComponent.java:5203)
at java.desktop/javax.swing.JComponent.paintImmediately(JComponent.java:5013)
at java.desktop/javax.swing.RepaintManager$4.run(RepaintManager.java:865)
at java.desktop/javax.swing.RepaintManager$4.run(RepaintManager.java:848)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:848)
at java.desktop/javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:823)
at java.desktop/javax.swing.RepaintManager.prePaintDirtyRegions(RepaintManager.java:772)
at java.desktop/javax.swing.RepaintManager$ProcessingRunnable.run(RepaintManager.java:1890)
at java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:770)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:740)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
Warning - overwriting a sequenceSetId for a viewport!
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Assuming project file with TEST is compatible with Jalview version 2.8.1
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
Warning - overwriting a sequenceSetId for a viewport!
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Assuming project file with TEST is compatible with Jalview version 2.8.1
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
Warning - overwriting a sequenceSetId for a viewport!
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Assuming project file with TEST is compatible with Jalview version 2.8.1
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
Warning - overwriting a sequenceSetId for a viewport!
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Assuming project file with TEST is compatible with Jalview version 2.8.1
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Assuming project file with TEST is compatible with Jalview version 2.8.1
INFO - Rebuiling WS menu
Warning - overwriting a sequenceSetId for a viewport!
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Assuming project file with TEST is compatible with Jalview version 2.8.1
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
Warning - overwriting a sequenceSetId for a viewport!
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Assuming project file with TEST is compatible with Jalview version 2.8.1
INFO - Rebuiling WS menu
Warning - overwriting a sequenceSetId for a viewport!
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Assuming project file with TEST is compatible with Jalview version 2.8.1
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Allocating Jmol Viewer:
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Warning - overwriting a sequenceSetId for a viewport!
Unhandled callback MEASURE [[FES]1602.S1 #736, [THR]89.OG1 #665, 1.328 nm]
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Error writing Jalview project
java.util.zip.ZipException: duplicate entry: 1606301142 Dataset for MAFFT Multiple Sequence Alignment of Retrieved from Uniprot.xml
at java.base/java.util.zip.ZipOutputStream.putNextEntry(ZipOutputStream.java:233)
at java.base/java.util.jar.JarOutputStream.putNextEntry(JarOutputStream.java:109)
at jalview.project.Jalview2XML.saveState(Jalview2XML.java:1741)
at jalview.project.Jalview2XML.writeDatasetFor(Jalview2XML.java:863)
at jalview.project.Jalview2XML.saveAllFrames(Jalview2XML.java:728)
at jalview.project.Jalview2XML.saveState(Jalview2XML.java:651)
at jalview.project.Jalview2XML.saveState(Jalview2XML.java:603)
at jalview.project.Jalview2xmlTests.__CLR4_4_1odp6yo455a(Jalview2xmlTests.java:454)
at jalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviews(Jalview2xmlTests.java:433)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:139)
at org.testng.internal.invokers.TestInvoker.invokeMethod(TestInvoker.java:677)
at org.testng.internal.invokers.TestInvoker.invokeTestMethod(TestInvoker.java:221)
at org.testng.internal.invokers.MethodRunner.runInSequence(MethodRunner.java:50)
at org.testng.internal.invokers.TestInvoker$MethodInvocationAgent.invoke(TestInvoker.java:969)
at org.testng.internal.invokers.TestInvoker.invokeTestMethods(TestInvoker.java:194)
at org.testng.internal.invokers.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:148)
at org.testng.internal.invokers.TestMethodWorker.run(TestMethodWorker.java:128)
at java.base/java.util.ArrayList.forEach(ArrayList.java:1541)
at org.testng.TestRunner.privateRun(TestRunner.java:829)
at org.testng.TestRunner.run(TestRunner.java:602)
at org.testng.SuiteRunner.runTest(SuiteRunner.java:437)
at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:431)
at org.testng.SuiteRunner.privateRun(SuiteRunner.java:391)
at org.testng.SuiteRunner.run(SuiteRunner.java:330)
at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52)
at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:95)
at org.testng.TestNG.runSuitesSequentially(TestNG.java:1256)
at org.testng.TestNG.runSuitesLocally(TestNG.java:1176)
at org.testng.TestNG.runSuites(TestNG.java:1099)
at org.testng.TestNG.run(TestNG.java:1067)
at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:141)
at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:90)
at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:61)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36)
at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33)
at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94)
at com.sun.proxy.$Proxy2.stop(Unknown Source)
at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193)
at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129)
at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100)
at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60)
at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56)
at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:133)
at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:71)
at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69)
at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74)
Error writing Jalview project
java.util.zip.ZipException: duplicate entry: 1606301142 Dataset for MAFFT Multiple Sequence Alignment of Retrieved from Uniprot.xml
at java.base/java.util.zip.ZipOutputStream.putNextEntry(ZipOutputStream.java:233)
at java.base/java.util.jar.JarOutputStream.putNextEntry(JarOutputStream.java:109)
at jalview.project.Jalview2XML.saveState(Jalview2XML.java:1741)
at jalview.project.Jalview2XML.writeDatasetFor(Jalview2XML.java:863)
at jalview.project.Jalview2XML.saveAllFrames(Jalview2XML.java:728)
at jalview.project.Jalview2XML.saveState(Jalview2XML.java:651)
at jalview.project.Jalview2XML.saveState(Jalview2XML.java:603)
at jalview.project.Jalview2xmlTests.__CLR4_4_1odp6yo455a(Jalview2xmlTests.java:454)
at jalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviews(Jalview2xmlTests.java:433)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:139)
at org.testng.internal.invokers.TestInvoker.invokeMethod(TestInvoker.java:677)
at org.testng.internal.invokers.TestInvoker.invokeTestMethod(TestInvoker.java:221)
at org.testng.internal.invokers.MethodRunner.runInSequence(MethodRunner.java:50)
at org.testng.internal.invokers.TestInvoker$MethodInvocationAgent.invoke(TestInvoker.java:969)
at org.testng.internal.invokers.TestInvoker.invokeTestMethods(TestInvoker.java:194)
at org.testng.internal.invokers.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:148)
at org.testng.internal.invokers.TestMethodWorker.run(TestMethodWorker.java:128)
at java.base/java.util.ArrayList.forEach(ArrayList.java:1541)
at org.testng.TestRunner.privateRun(TestRunner.java:829)
at org.testng.TestRunner.run(TestRunner.java:602)
at org.testng.SuiteRunner.runTest(SuiteRunner.java:437)
at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:431)
at org.testng.SuiteRunner.privateRun(SuiteRunner.java:391)
at org.testng.SuiteRunner.run(SuiteRunner.java:330)
at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52)
at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:95)
at org.testng.TestNG.runSuitesSequentially(TestNG.java:1256)
at org.testng.TestNG.runSuitesLocally(TestNG.java:1176)
at org.testng.TestNG.runSuites(TestNG.java:1099)
at org.testng.TestNG.run(TestNG.java:1067)
at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:141)
at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:90)
at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:61)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36)
at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33)
at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94)
at com.sun.proxy.$Proxy2.stop(Unknown Source)
at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193)
at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129)
at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100)
at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60)
at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56)
at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:133)
at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:71)
at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69)
at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74)
Error writing Jalview project
java.util.zip.ZipException: duplicate entry: 1606301142 Dataset for MAFFT Multiple Sequence Alignment of Retrieved from Uniprot.xml
at java.base/java.util.zip.ZipOutputStream.putNextEntry(ZipOutputStream.java:233)
at java.base/java.util.jar.JarOutputStream.putNextEntry(JarOutputStream.java:109)
at jalview.project.Jalview2XML.saveState(Jalview2XML.java:1741)
at jalview.project.Jalview2XML.writeDatasetFor(Jalview2XML.java:863)
at jalview.project.Jalview2XML.saveAllFrames(Jalview2XML.java:728)
at jalview.project.Jalview2XML.saveState(Jalview2XML.java:651)
at jalview.project.Jalview2XML.saveState(Jalview2XML.java:603)
at jalview.project.Jalview2xmlTests.__CLR4_4_1odp6yo455a(Jalview2xmlTests.java:454)
at jalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviews(Jalview2xmlTests.java:433)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:139)
at org.testng.internal.invokers.TestInvoker.invokeMethod(TestInvoker.java:677)
at org.testng.internal.invokers.TestInvoker.invokeTestMethod(TestInvoker.java:221)
at org.testng.internal.invokers.MethodRunner.runInSequence(MethodRunner.java:50)
at org.testng.internal.invokers.TestInvoker$MethodInvocationAgent.invoke(TestInvoker.java:969)
at org.testng.internal.invokers.TestInvoker.invokeTestMethods(TestInvoker.java:194)
at org.testng.internal.invokers.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:148)
at org.testng.internal.invokers.TestMethodWorker.run(TestMethodWorker.java:128)
at java.base/java.util.ArrayList.forEach(ArrayList.java:1541)
at org.testng.TestRunner.privateRun(TestRunner.java:829)
at org.testng.TestRunner.run(TestRunner.java:602)
at org.testng.SuiteRunner.runTest(SuiteRunner.java:437)
at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:431)
at org.testng.SuiteRunner.privateRun(SuiteRunner.java:391)
at org.testng.SuiteRunner.run(SuiteRunner.java:330)
at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52)
at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:95)
at org.testng.TestNG.runSuitesSequentially(TestNG.java:1256)
at org.testng.TestNG.runSuitesLocally(TestNG.java:1176)
at org.testng.TestNG.runSuites(TestNG.java:1099)
at org.testng.TestNG.run(TestNG.java:1067)
at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:141)
at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:90)
at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:61)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36)
at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33)
at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94)
at com.sun.proxy.$Proxy2.stop(Unknown Source)
at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193)
at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129)
at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100)
at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60)
at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56)
at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:133)
at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:71)
at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69)
at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74)
Error writing Jalview project
java.util.zip.ZipException: duplicate entry: 1606301142 Dataset for MAFFT Multiple Sequence Alignment of Retrieved from Uniprot.xml
at java.base/java.util.zip.ZipOutputStream.putNextEntry(ZipOutputStream.java:233)
at java.base/java.util.jar.JarOutputStream.putNextEntry(JarOutputStream.java:109)
at jalview.project.Jalview2XML.saveState(Jalview2XML.java:1741)
at jalview.project.Jalview2XML.writeDatasetFor(Jalview2XML.java:863)
at jalview.project.Jalview2XML.saveAllFrames(Jalview2XML.java:728)
at jalview.project.Jalview2XML.saveState(Jalview2XML.java:651)
at jalview.project.Jalview2XML.saveState(Jalview2XML.java:603)
at jalview.project.Jalview2xmlTests.__CLR4_4_1odp6yo455a(Jalview2xmlTests.java:454)
at jalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviews(Jalview2xmlTests.java:433)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:139)
at org.testng.internal.invokers.TestInvoker.invokeMethod(TestInvoker.java:677)
at org.testng.internal.invokers.TestInvoker.invokeTestMethod(TestInvoker.java:221)
at org.testng.internal.invokers.MethodRunner.runInSequence(MethodRunner.java:50)
at org.testng.internal.invokers.TestInvoker$MethodInvocationAgent.invoke(TestInvoker.java:969)
at org.testng.internal.invokers.TestInvoker.invokeTestMethods(TestInvoker.java:194)
at org.testng.internal.invokers.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:148)
at org.testng.internal.invokers.TestMethodWorker.run(TestMethodWorker.java:128)
at java.base/java.util.ArrayList.forEach(ArrayList.java:1541)
at org.testng.TestRunner.privateRun(TestRunner.java:829)
at org.testng.TestRunner.run(TestRunner.java:602)
at org.testng.SuiteRunner.runTest(SuiteRunner.java:437)
at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:431)
at org.testng.SuiteRunner.privateRun(SuiteRunner.java:391)
at org.testng.SuiteRunner.run(SuiteRunner.java:330)
at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52)
at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:95)
at org.testng.TestNG.runSuitesSequentially(TestNG.java:1256)
at org.testng.TestNG.runSuitesLocally(TestNG.java:1176)
at org.testng.TestNG.runSuites(TestNG.java:1099)
at org.testng.TestNG.run(TestNG.java:1067)
at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:141)
at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:90)
at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:61)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36)
at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33)
at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94)
at com.sun.proxy.$Proxy2.stop(Unknown Source)
at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193)
at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129)
at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100)
at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60)
at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56)
at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:133)
at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:71)
at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69)
at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74)
Assuming project file with TEST is compatible with Jalview version 2.8.1
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Allocating Jmol Viewer:
Assuming project file with TEST is compatible with Jalview version 2.8.1
Warning - overwriting a sequenceSetId for a viewport!
Unhandled callback MEASURE [[FES]1602.S1 #736, [THR]89.OG1 #665, 1.328 nm]
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Assuming project file with TEST is compatible with Jalview version 2.8.1
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Assuming project file with TEST is compatible with Jalview version 2.8.1
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
Warning - overwriting a sequenceSetId for a viewport!
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Assuming project file with TEST is compatible with Jalview version 2.8.1
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Assuming project file with TEST is compatible with Jalview version 2.8.1
INFO - Rebuiling WS menu
Warning - overwriting a sequenceSetId for a viewport!
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Assuming project file with TEST is compatible with Jalview version 2.8.1
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
Warning - overwriting a sequenceSetId for a viewport!
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Assuming project file with TEST is compatible with Jalview version 2.8.1
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Assuming project file with TEST is compatible with Jalview version 2.8.1
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Assuming project file with TEST is compatible with Jalview version 2.8.1
INFO - Rebuiling WS menu
Warning - overwriting a sequenceSetId for a viewport!
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Assuming project file with TEST is compatible with Jalview version 2.8.1
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
Warning - overwriting a sequenceSetId for a viewport!
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Assuming project file with TEST is compatible with Jalview version 2.8.1
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
Warning - overwriting a sequenceSetId for a viewport!
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Allocating Jmol Viewer:
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Warning - overwriting a sequenceSetId for a viewport!
Unhandled callback MEASURE [[FES]1602.S1 #736, [THR]89.OG1 #665, 1.328 nm]
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Warning - overwriting a sequenceSetId for a viewport!
Exception in thread "AWT-EventQueue-0" java.lang.ArrayIndexOutOfBoundsException: Index 0 out of bounds for length 0
at java.desktop/javax.swing.plaf.basic.BasicTabbedPaneUI.getTabBounds(BasicTabbedPaneUI.java:1733)
at java.desktop/javax.swing.plaf.basic.BasicTabbedPaneUI.getTabBounds(BasicTabbedPaneUI.java:1668)
at java.desktop/javax.swing.plaf.basic.BasicTabbedPaneUI.repaintTab(BasicTabbedPaneUI.java:2338)
at java.desktop/javax.swing.plaf.basic.BasicTabbedPaneUI.setFocusIndex(BasicTabbedPaneUI.java:2322)
at java.desktop/javax.swing.plaf.basic.BasicTabbedPaneUI$Handler.focusGained(BasicTabbedPaneUI.java:4116)
at java.desktop/java.awt.AWTEventMulticaster.focusGained(AWTEventMulticaster.java:227)
at java.desktop/java.awt.Component.processFocusEvent(Component.java:6524)
at java.desktop/java.awt.Component.processEvent(Component.java:6391)
at java.desktop/java.awt.Container.processEvent(Container.java:2263)
at java.desktop/java.awt.Component.dispatchEventImpl(Component.java:5011)
at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2321)
at java.desktop/java.awt.Component.dispatchEvent(Component.java:4843)
at java.desktop/java.awt.KeyboardFocusManager.redispatchEvent(KeyboardFocusManager.java:1950)
at java.desktop/java.awt.DefaultKeyboardFocusManager.typeAheadAssertions(DefaultKeyboardFocusManager.java:1050)
at java.desktop/java.awt.DefaultKeyboardFocusManager.dispatchEvent(DefaultKeyboardFocusManager.java:674)
at java.desktop/java.awt.Component.dispatchEventImpl(Component.java:4892)
at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2321)
at java.desktop/java.awt.Component.dispatchEvent(Component.java:4843)
at java.desktop/java.awt.KeyboardFocusManager.dispatchAndCatchException(KeyboardFocusManager.java:2597)
at java.desktop/java.awt.KeyboardFocusManager.processCurrentLightweightRequests(KeyboardFocusManager.java:2693)
at java.desktop/java.awt.KeyboardFocusManager.retargetFocusEvent(KeyboardFocusManager.java:2942)
at java.desktop/java.awt.Component.dispatchEventImpl(Component.java:4884)
at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2321)
at java.desktop/java.awt.Component.dispatchEvent(Component.java:4843)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:772)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:95)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:745)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:743)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:742)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Assuming project file with TEST is compatible with Jalview version 2.8.1
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
Warning - overwriting a sequenceSetId for a viewport!
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Allocating Jmol Viewer:
Assuming project file with TEST is compatible with Jalview version 2.8.1
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Assuming project file with TEST is compatible with Jalview version 2.8.1
Warning - overwriting a sequenceSetId for a viewport!
Unhandled callback MEASURE [[FES]1602.S1 #736, [THR]89.OG1 #665, 1.328 nm]
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Assuming project file with TEST is compatible with Jalview version 2.8.1
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Assuming project file with TEST is compatible with Jalview version 2.8.1
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Assuming project file with TEST is compatible with Jalview version 2.8.1
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Allocating Jmol Viewer:
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Warning - overwriting a sequenceSetId for a viewport!
Unhandled callback MEASURE [[FES]1602.S1 #736, [THR]89.OG1 #665, 1.328 nm]
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4
Warning - overwriting a sequenceSetId for a viewport!
INFO - Rebuiling WS menu
INFO - Building web service menu for slivka
INFO - Building web services menu for jobs dispatcher
INFO - Building web services menu for jpred4