Class jalview.io.StockholmFileTest
|
100%
successful |
| Test | Duration | Result |
|---|---|---|
| curlyWUSSsecondaryStructureForRNASequence | 0.002s | passed |
| dbrefOutput | 0.001s | passed |
| detectWussBrackets | 0.001s | passed |
| fullWUSSsecondaryStructureForRNASequence | 0.001s | passed |
| pfamFileDataExtraction | 0.057s | passed |
| pfamFileIO | 0.131s | passed |
| rfamFileIO | 0.132s | passed |
| secondaryStructureForRNASequence | 0.002s | passed |
| stockholmFileRnaSSAlphaChars | 0.004s | passed |
| stockholmFileRnaSSSpaceChars | 0.002s | passed |
| testAnnotationEquivalence | 0.005s | passed |
Check sequence: Dm/1-25 # STOCKHOLM 1.0 #=GS FER2_SPIOL AC P00224 FER2_SPIOL AASSDDDFFF // Check sequence: Dm/1-25 File format identified as Stockholm Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@4b85907b Attempting to connect with DisemblWS... Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@78fe3ae0 Attempting to connect with GlobPlotWS... Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@57aa7de4 Attempting to connect with IUPredWS... Reading file: examples/PF00111_seed.stk File format identified as Stockholm Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@3e5676a8 Output file in 'Stockholm': # STOCKHOLM 1.0 #=GF SE Prosite #=GF TP Domain #=GF DE 2Fe-2S iron-sulfur cluster binding domain #=GF WK Ferredoxin #=GF GA 20.70 15.00; #=GF AC PF00111.22 #=GF SQ 206 #=GF ID Fer2 #=GF AU Sonnhammer ELL #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 15929002 -E 1000 --cpu 4 HMM pfamseq #=GF DR HOMSTRAD; Ald_Xan_dh_1; #=GF TC 20.70 15.70; #=GF NC 20.60 14.90; #=GF PI fer2; #=GS DMPP_PSEUF/5-82 AC P19734 #=GS O52683_THEMA/3-65 AC O52683 #=GS NDUS1_NEUCR/38-101 AC P24918 #=GS P77908_MOOTH/4-67 AC P77908 #=GS XDHC_ECOLI/11-69 AC Q46801 #=GS NQRF_HAEIN/43-119 AC O05012 #=GS PDR_BURCE/241-314 AC P33164 #=GS CBDC_BURCE/8-85 AC Q51603 #=GS Q9ZNP2_COMTE/5-82 AC Q9ZNP2 #=GS Q9ZAN6_9BURK/12-91 AC Q9ZAN6 #=GS Q44501_AZOVI/10-107 AC Q44501 #=GS HOXU_CUPNH/5-66 AC P22318 #=GS DESET_MYCTU/303-373 AC O05875 #=GS TERPB_PSESP/8-92 AC P33007 #=GS POBB_PSEPS/236-311 AC Q52186 #=GS FER_BUCAP/10-92 AC O51882 #=GS Q45344_BURPI/10-88 AC Q45344 #=GS O30225_ARCFU/5-84 AC O30225 #=GS KSHB_MYCTU/273-348 AC P96853 #=GS DCMS_HYDPS/8-67 AC P19915 #=GS Q52140_PSEPU/3-78 AC Q52140 #=GS O24827_ACISP/7-85 AC O24827 #=GS FER_EUGVI/8-82 AC P22341 #=GS NUOG_SALTI/4-72 AC P0A1Y5 #=GS FER2_CYACA/8-83 AC P15789 #=GS RFBI_SALTY/5-76 AC P26395 #=GS FER2_RAPSA/9-84 AC P14937 #=GS O84964_9RALS/4-82 AC O84964 #=GS FER_MARPO/7-81 AC P09735 #=GS FER1_HALMA/35-108 AC P00217 #=GS P74801_SYNY3/5-63 AC P74801 #=GS Q9ZNE4_CLOPE/4-67 AC Q9ZNE4 #=GS Q53028_RHOCO/4-80 AC Q53028 #=GS P94680_COMTE/234-309 AC P94680 #=GS FER_BUMFI/9-84 AC P13106 #=GS O32476_PSESP/4-81 AC O32476 #=GS O85226_PSEFL/27-86 AC O85226 #=GS FER3_MAIZE/63-138 AC P27788 #=GS ETP1_SCHPO/525-592 AC Q10361 #=GS Q47914_SPHCR/241-316 AC Q47914 #=GS NQRF_CHLTR/46-122 AC O84745 #=GS FER_CHLFU/6-80 AC P56408 #=GS P73171_SYNY3/7-85 AC P73171 #=GS HCRC_THAAR/7-66 AC O33818 #=GS P72305_RHOOP/5-66 AC P72305 #=GS XYLZ_PSEPU/8-86 AC P23101 #=GS Q9Z9X8_9GAMM/242-317 AC Q9Z9X8 #=GS O17506_BOMMO/19-89 AC O17506 #=GS FER2_RICPR/11-93 AC Q9ZDW6 #=GS HCR_ECOLI/241-316 AC P75824 #=GS NQO3_THET8/4-88 AC Q56223 #=GS O61198_CAEEL/8-78 AC O61198 #=GS FER_DATST/8-82 AC P68165 #=GS O07876_SPHSX/8-91 AC O07876 #=GS FER_PALPL/9-83 AC P07484 #=GS P95533_PSEPU/253-328 AC P95533 #=GS Q46508_DESFR/6-74 AC Q46508 #=GS FER5_RHOCA/10-107 AC P37097 #=GS Q51944_BURPI/5-82 AC Q51944 #=GS VANB_PSEPU/231-307 AC O54037 #=GS O84985_PSEPU/271-347 AC O84985 #=GS FER1_SYNP2/9-83 AC P31965 #=GS FER_WHEAT/54-128 AC P00228 #=GS O23344_ARATH/57-131 AC O23344 #=GS NUOG_MYCTU/19-82 AC P95175 #=GS FER3_RAPSA/8-82 AC P14938 #=GS PHT2_PSEPU/243-316 AC Q05182 #=GS O52378_9RALS/3-78 AC O52378 #=GS P72223_PSEPU/14-73 AC P72223 #=GS FER_PERBI/6-80 AC P10770 #=GS Q52574_PSESP/5-83 AC Q52574 #=GS Q9ZJW1_HELPJ/4-65 AC Q9ZJW1 #=GS NDUS1_SOLTU/70-133 AC Q43644 #=GS NUOG_RICPR/4-67 AC Q9ZCF6 #=GS ALDO1_ARATH/23-95 AC Q7G193 #=GS FER_BRYMA/8-83 AC P07838 #=GS O30328_ACEEU/4-63 AC O30328 #=GS Q59128_ARTNI/14-73 AC Q59128 #=GS O53709_MYCTU/5-64 AC O53709 #=GS PUTX_PSEPU/8-92 AC P00259 #=GS ALDO4_ARATH/8-78 AC Q7G191 #=GS O54050_RHOCA/5-68 AC O54050 #=GS O31003_VIBAN/5-73 AC O31003 #=GS O17892_CAEEL/18-86 AC O17892 #=GS Q9Z8H9_CHLPN/8-83 AC Q9Z8H9 #=GS FER_TRIVA/13-90 AC P21149 #=GS O66892_AQUAE/7-72 AC O66892 #=GS O85675_ACIAD/8-85 AC O85675 #=GS FER2_PHYAM/9-83 AC P00231 #=GS FER2_APHSA/10-86 AC P00251 #=GS FERN_PSEPU/7-85 AC P23263 #=GS XDH_BOVIN/8-78 AC P80457 #=GS Q44513_ANAVA/6-69 AC Q44513 #=GS O27878_METTH/21-82 AC O27878 #=GS P74159_SYNY3/11-86 AC P74159 #=GS P71846_MYCTU/600-675 AC P71846 #=GS P95635_RHOPA/15-74 AC P95635 #=GS Q59261_CLOSA/4-67 AC Q59261 #=GS XDH_DROSU/13-83 AC P91711 #=GS Q9ZBN8_STRCO/5-65 AC Q9ZBN8 #=GS Q9ZNP1_COMTE/9-88 AC Q9ZNP1 #=GS O87815_CUPNE/22-85 AC O87815 #=GS Q17250_BOMMO/18-88 AC Q17250 #=GS Q59262_CLOAB/4-66 AC Q59262 #=GS VANB_PSES9/231-306 AC P12580 #=GS Q52167_PSEPU/8-86 AC Q52167 #=GS YJGC_BACSU/7-68 AC O34720 #=GS CSMI_CHLTE/5-82 AC O68988 #=GS FER2_SYNP6/8-83 AC P08451 #=GS ADO_BOVIN/9-79 AC P48034 #=GS NDUS1_DICDI/5-71 AC Q34312 #=GS O29566_ARCFU/5-80 AC O29566 #=GS FER6_RHOCA/7-91 AC P80306 #=GS NDOR_PSEPU/3-78 AC Q52126 #=GS P73388_SYNY3/9-84 AC P73388 #=GS YEAX_ECOLI/237-313 AC P76254 #=GS FER1_EQUAR/7-81 AC P00235 #=GS O87682_ARTNI/8-67 AC O87682 #=GS O87803_PSEST/5-82 AC O87803 #=GS P74283_SYNY3/5-88 AC P74283 #=GS O88034_STRCO/230-305 AC O88034 #=GS NDUS1_RECAM/4-67 AC O21241 #=GS BENC_ACIAD/19-98 AC P07771 #=GS IORA_BREDI/4-64 AC Q51697 #=GS FER6_MAIZE/66-141 AC P94044 #=GS XYLA_PSEPU/20-97 AC P21394 #=GS XDHE_BACSU/18-77 AC O32143 #=GS FERA_ALOMA/8-82 AC P81372 #=GS FER2_CAUCR/8-91 AC P37098 #=GS FERX_PSEPU/8-86 AC P23103 #=GS FER_APHSA/9-83 AC P00250 #=GS FER_HAEIN/10-92 AC P44428 #=GS FER2_NOSMU/10-85 AC P00249 #=GS Q9ZAM5_SPHSX/8-91 AC Q9ZAM5 #=GS Q52589_9PSED/8-67 AC Q52589 #=GS YFAE_ECOLI/4-77 AC P0ABW3 #=GS O49551_ARATH/44-127 AC O49551 #=GS Q51492_PSEAE/3-78 AC Q51492 #=GS YAGT_ECOLI/65-124 AC P77165 #=GS FER_ARCLA/8-82 AC P00223 #=GS FER_SYNY4/9-83 AC P00243 #=GS PHF1_CLOPA/4-67 AC P29166 #=GS ADX_PIG/71-155 AC P00258 #=GS O66748_AQUAE/6-70 AC O66748 #=GS Y092_METJA/14-73 AC Q57557 #=GS O69222_AZOVI/11-93 AC O69222 #=GS Q52061_PSEPU/8-86 AC Q52061 #=GS YCBX_ECOLI/293-362 AC P75863 #=GS ADRX_YEAST/67-149 AC Q12184 #=GS O85971_SPHAR/13-90 AC O85971 #=GS O53669_MYCTU/13-78 AC O53669 #=GS P96096_THIFE/9-86 AC P96096 #=GS O29575_ARCFU/14-75 AC O29575 #=GS XDH_EMENI/39-108 AC Q12553 #=GS O05933_PSEPU/11-88 AC O05933 #=GS Q46606_DESVU/3-71 AC Q46606 #=GS NQRF_VIBAL/39-115 AC Q56584 #=GS FER2_SPIOL/8-82 AC P00224 #=GS MOP_DESGI/6-65 AC Q46509 #=GS O84963_9RALS/4-81 AC O84963 #=GS MMOC_METTR/7-81 AC Q53563 #=GS FER1_SPIOL/58-132 AC P00221 #=GS FER3_CYACA/9-84 AC P00241 #=GS Q9ZBV9_STRCO/15-78 AC Q9ZBV9 #=GS FER2_PLEBO/10-85 AC P46035 #=GS FER_THEVL/9-84 AC P0A3D1 #=GS VANB_PSEUH/234-309 AC O05617 #=GS FER_PHYPA/57-132 AC O04166 #=GS O87617_PSEAE/3-78 AC O87617 #=GS Q9Z3W9_9SPHN/8-85 AC Q9Z3W9 #=GS TMOF_PSEME/4-81 AC Q03304 #=GS Q39648_CITSI/61-136 AC Q39648 #=GS FER1_PHYAM/8-82 AC P00229 #=GS O52837_BRAJA/6-65 AC O52837 #=GS VANB_ACIAD/234-309 AC O24840 #=GS FER_PSEAE/10-92 AC Q51383 #=GS P74022_SYNY3/6-69 AC P74022 #=GS FER_SILPR/57-131 AC P04669 #=GS PAAE_ECOLI/266-342 AC P76081 #=GS NQO3_PARDE/7-71 AC P29915 #=GS Q43983_ACICA/5-82 AC Q43983 #=GS Q44253_ACISP/251-326 AC Q44253 #=GS FER4_RHOCA/7-86 AC P16022 #=GS Y1309_HAEIN/3-75 AC P45154 #=GS O84062_CHLTR/8-83 AC O84062 #=GS O23887_MAIZE/15-85 AC O23887 #=GS CSMJ_CHLTE/5-82 AC O68983 #=GS NDUS1_BOVIN/34-97 AC P15690 #=GS O05397_BACSU/11-72 AC O05397 #=GS P95277_MYCTU/9-84 AC P95277 #=GS CBAB_COMTE/232-307 AC Q44257 #=GS P73774_SYNY3/7-88 AC P73774 #=GS FER1_CYAPA/10-85 AC P17007 #=GS FER_PORPU/10-85 AC P51320 #=GS FER_ODOSI/10-85 AC P49522 #=GS FER1_AQUAE/3-83 AC O67065 #=GS P74447_SYNY3/31-113 AC P74447 #=GS FER2_EQUAR/7-80 AC P00237 #=GS Q59656_PLEBO/573-647 AC Q59656 #=GS FER_GLEJA/8-82 AC P00233 #=GS P74449_SYNY3/11-88 AC P74449 #=GS Q9Z418_PSEPU/11-90 AC Q9Z418 #=GS P95461_9PSED/17-94 AC P95461 #=GS FER_SAMNI/8-82 AC P00226 #=GS P94157_SYNP6/6-69 AC P94157 #=GS O86347_MYCTU/231-301 AC O86347 FER_GLEJA/8-82 LTPDGE...RTIEVPDDKF.ILDAGE...E.A.GLDLPYSCRA.......GA....CSSCTGKLLDGRV.....DQSE...QSFLDDDQMAEGFV.....................LTCVAYPA FER2_RAPSA/9-84 IGPEGE..ENEFEVQDDQF.ILDAAE...E.A.GVDLPYSCRA.......GA....CSTCAGQIVKGQV.....DQSE...GSFLEDDHFEKGFV.....................LTCVAYPQ Q39648_CITSI/61-136 IGPMGE..EHEFEAQEDQY.ILDAAE...E.A.GVDLPYSCRA.......GA....CSTCAGKLVSGSV.....DQSD...GSFLDDNQMEAGYL.....................LTCISYPT FER3_MAIZE/63-138 VGPEGE..EHEFDAPDDAY.ILDAAE...T.A.GVELPYSCRA.......GA....CSTCAGKIESGSV.....DQSD...GSFLDDGQQEEGYV.....................LTCVSYPK FER6_MAIZE/66-141 VGPDGT..EHEFEAPDDTY.ILEAAE...T.A.GVELPFSCRA.......GS....CSTCAGRMSAGEV.....DQSE...GSFLDDGQMAEGYL.....................LTCISYPK FER1_SYNP2/9-83 ITPDGE...VSYDAPDDEY.ILDSAG...D.A.GYDLPASCRA.......GA....CSTCAGKIVSGTV.....DQSE...QSFLDDDQIEAGYV.....................LTCIAYPQ FER1_EQUAR/7-81 KTPSGE...FTLDVPEGTT.ILDAAE...E.A.GYDLPFSCRA.......GA....CSSCLGKVVSGSV.....DESE...GSFLDDGQMEEGFV.....................LTCIAIPE #=GR FER2_EQUAR/7-80 SS E----- EEEEE----- TT---- - S S----SS-- -- -STT---EEE-EE E--- -----HHHHH---- -TTT-EEE FER2_EQUAR/7-80 KTPDGD...ITFDVEPGER.LIDIGS...E.K..ADLPLSCQA.......GA....CSTCLGKIVSGTV.....DQSE...GSFLDDEQIEQGYV.....................LTCIAIPE FER2_PLEBO/10-85 NKKRNL..DITLPVDEDTT.VLEAAE...E.A.ELDLPFSCHS.......GA....CSSCVGKVVEGEI.....NQDD...QTFLDEEQVAKGFV.....................LLCVTYPR P95533_PSEPU/253-328 VLMKGQ..THAVPVRAGEL.LLSAML...R.A.GLPAPHACRV.......GE....CASCMCRLQAGEVQ....RLDS....SVLDEDDVAAG.W...................L.LACRTRAA KSHB_MYCTU/273-348 VELDGQ..THTVSWPRTAK.LLDVLL...A.A.GLDAPFSCRE.......GH....CGACACTLRAGKVN....MGVN....DVLEQQDLDEG.L...................I.LACQSRPE Q44253_ACISP/251-326 FMLNGI..KNSVMCSEDDFILNEIIK......AGINVPSSCCA.......GN....CGSCMCLLVSGDVI....LESN....TVLDASDEEDGWI.....................LACRSKPR Q59656_PLEBO/573-647 FAQSGK....EITCTQDDL.ILDIAD.....QAEVAIESSCRS.......GT....CGSCKCTLLEGEV.....SYDS..EPDVLDEHDRASGQI.....................LTCIARPV P71846_MYCTU/600-675 FTLSGQ..RAIFDLVPGDS.ILEGAL...G..LRSDAPYACMG.......GA....CGTCRAKLIEGNVE....MD....HNFALRKAELDAGYI.....................LTCQSHPT O84985_PSEPU/271-347 VISDGR..ALTFDLPRNTQNVLDAGN...A.I.GAELPYSCKA.......GV....CSTCKCRVIEGEV.....EMDS...NHALEDYEVAAGYV.....................LSCQTYPV PAAE_ECOLI/266-342 VRQDGR..DREIVLNADDESILDAAL...R.Q.GADLPYACKG.......GV....CATCKCKVLRGKV.....AMET...NYSLEPDELAAGYV.....................LSCQALPL HCR_ECOLI/241-316 FTKLQP..AREFYAPVGTT.LLEALE.....SNNVPVVAACRA.......GV....CGCCKTKVVSGEY.....TVSS...TMTLTDAEIAEGYV.....................LACSCHPQ O87803_PSEST/5-82 IKIADT..DVEFTISDRDT.ILRAAL...R.D.GIPISYECNS.......GG....CGSCKIDVVEGQVE...TLWGE...APGLSPRDKRK.SR...................K.LACQCLAS TMOF_PSEME/4-81 IQSDDL..LHHFEADSNDT.LLSAAL...R.A.ELVFPYECNS.......GG....CGACKIELLEGEVS...NLWPD...APGLAARELRK.NR...................F.LACQCKPL O32476_PSESP/4-81 LKIEGQ..APGTCG.SGKS.LLVSAL...A.N.GIGFPYECAS.......GG....CGVCKFELLEGNVQ...SMWPD...APGLSSRDREKGNR...................H.LACQCVAL Q51944_BURPI/5-82 ITIEGG..SAFSVAADEDT.LLRGAL...R.G.GIALPHECSV.......GG....CGACRFDLLSGLVE...SIWPE...APGLSERDRKR.GK...................H.LACQSRPL Q53028_RHOCO/4-80 INVQPF..SHEYSCEDGES.LLDGAL..RN...SLLLKYGCKH.......GG....CGTCKVRLLDGDV.....EEPG..SSFALTPEDRENDVI.....................LACASVPL Q45344_BURPI/10-88 YAWNRP..RSTTHARPPKA.SLTGML...R.LGRKGIPVGCVN.......GG....CGVCKVRVLDGST......RLGR.RQPCPRQRRRRSAGL...................T.LACREAPL Q9ZNP1_COMTE/9-88 VSVEQT..GDTYACGTHES.LLSGML...R.LGRKGIPVGCVN.......GG....CGVCKVQVLEGAV.....RHLGP.VSCAHVSDLERDQGY...................T.LACRVAPL Q9Z418_PSEPU/11-90 VHVMQT..GETFPCATDES.LLQGML...R.LGRKGIPVGCVN.......GG....CGVCKVHVIEGQC.....RPLGP.VSRAHVSAAEEARGF...................T.LACRVAPV Q9ZAN6_9BURK/12-91 VHVAQT..DETFPCAGNES.LLTGMV...R.LGRKGIPVGCVN.......GG....CGVCKVRIVEGQI.....KALGP.ISRAHVTLDEENQGY...................T.LACRVAPQ FERN_PSEPU/7-85 ITVQPG..GERFVCQPQQS.ALHAME...T.QGKRCLPVGCRG.......GG....CGLCKVRVLAGDY......ESGR.VSCKHLPVEAREQGY...................A.LACRLFAR O24827_ACISP/7-85 ITEQCS..GQRFPCKAGQS.VLKAME...Q.QGLECAPVGCRG.......GG....CGLCKVTVREGDY......ECGK.MSRVHAPPEALAQGE...................V.LACRIYPL FERX_PSEPU/8-86 VFEVLS..GQSFRCAEGQS.VLRAME...A.QGKRCIPVGCRG.......GG....CGLCRVRVLSGAY......RSGR.MSRGHVPAKAAAEAL...................A.LACQVFPQ Q52061_PSEPU/8-86 IRETVS..GQTFRCLPDQS.VLSAME...Q.QGKRCVPVGCRG.......GG....CGLCKVRVLSGTY......QCHK.MSCNHVPPEAAKQGL...................A.LACQLFPQ Q52167_PSEPU/8-86 VHETNS..GQSFTCRPDQS.VLRAME...E.QGKRCVPVGCRG.......GG....CGLCKVRVLSGDY......QCGR.MSCSQVPPEAAQQGL...................A.LACQLYPR O84964_9RALS/4-82 VEIADS..GQRYPCDPGQN.LLRAME...V.LGQRGIPAGCRG.......GG....CGVCKVRIESGRY......RTGK.MSRACLSEAEQGQGL...................V.LACKAFPD Q9Z3W9_9SPHN/8-85 IRILGG..GQ.FACPEGER.VLIAME...Q.FGSSDIGVGCRG.......GG....CGFCLVRVVEGEY......RTGK.MSTAKVSVADQAKGY...................A.LACRIYPM DMPP_PSEUF/5-82 VTIEPT..GEVIEVEDGQT.ILQAAL...R.Q.GVWLPFACGH.......GT....CATCKVQVVEGEVD...IGEAS...PFALMDIERDERKV.....................LACCAIPL O84963_9RALS/4-81 LTIEPI..GQTIPIAPGQT.VLDACL...R.S.GVWLPHACCH.......GL....CATCKVQVVEGEVD...QGEAS..SFALMDFER.DNGQC.....................LACCATAQ Q52574_PSESP/5-83 LTIEPL..GRTLDVAEGQT.LLDAAL...R.S.GVYIPHACGH.......GL....CGTCKVQVTSGEVD...HGAAN..PLRRSWISSGEEGKT.....................LACCATAL Q9ZNP2_COMTE/5-82 LTLEPL..GASIEVEEGQT.LLDAAL...R.Q.GIYIPHACGH.......GL....CGTCKIQVCDGDVD...HGAAN..PFALMDMER.EDGMT.....................LACCATLQ Q43983_ACICA/5-82 VTIEPA..GTIIQVEEDQT.ILDAAL...R.Q.GVWLPFACGH.......GT....CGTCKVQVTDGFYD...VGEAS..PFALMDIER.EENKV.....................LACCCKPE O87617_PSEAE/3-78 LHIQPL..GQTLSVDSGAN.LLEALR...A.AE.VPISYSCMA.......GR....CGTCRCKVLKGQV......L..E.SGREATLTNPHADDY...................V.LACMSAIT O52378_9RALS/3-78 LVVEPL..NLHLNAETGST.LLDVLR...S.NE.VPISYSCMS.......GR....CGTCRCRVIAGHL......R..D.NGPETGRPQAGKGTY...................V.LACQAVLT Q51492_PSEAE/3-78 LLVLPN..NRRLPFDSGAN.LLEVLR...E.HR.VGISYSCMS.......GR....CGTCRCRVIDGSV......I..S.SAAKSGDSNRIEEHY...................V.LACQSVLT NDOR_PSEPU/3-78 LLIQPN..NRIIPFSAGAN.LLEVLR...E.NG.VAISYSCLS.......GR....CGTCRCRVIDGSV......I..D.SGAENGQSNLTDKQY...................V.LACQSVLT Q52140_PSEPU/3-78 LLIQPN..NRLISFSPGAN.LLEVLR...E.NG.VAISYSCMS.......GR....CGTCRCRVTDGSV......I..D.SGTGSGLPHLVDEHY...................V.LACRSVLT Q9Z9X8_9GAMM/242-317 VRIASS..GATVHVDKHTT.IVAALA...S.I.GIEVDTSCGE.......GV....CGTCMVDVVSGTP.....EHRD....HCLSKAERASGKV...................I.CCCVSRAR VANB_PSEUH/234-309 VRIHST..GQVLQVPADQT.VSQVLD...A.A.GIIVPVSCEQ.......GI....CGTCITRVVDGEP.....DHRD....FFLTDAEKAKNDQ...................F.TPCCSRAK VANB_PSES9/231-306 GRLARS..GLTLQVPAERS.VAQVLD...D.A.GVCIPLACEQ.......GI....CGTCLTRVLDGEP.....EHRD....SFLTDAERARNDQ...................F.TPCCSRAR VANB_PSEPU/231-307 VQLNST..GQVFEVPADQS.VVHVLE...Q.H.GIAIAMSCEQ.......GI....CGTCLTRVLSGTPE....ASRP....VFLTEQEQALNDQ...................F.TPCCSRSK VANB_ACIAD/234-309 IEVLGS..DRKIEVSAHQT.ATQALL...E.H.GFDVPVSCEQ.......GI....CGTCITRVVSGTP.....DHRD....VFMTDEEHALNDQ...................F.TPCCSRAK O88034_STRCO/230-305 VVLARS..GRTVAVPPGTS.VLDAVR...E.T.GVEVLYSCTE.......GT....CGTCETEVVEGEP.....DHRD....SVLTEEERAAGET...................M.LICVSRCR P94680_COMTE/234-309 LVLQRA..GLSTTVDAHES.VLDAME...R.V.GVDFPWSCRE.......GI....CGTCEAPVLEGEV.....QHLD....YVLSPEERAEQRR...................M.MVCVSRCG CBAB_COMTE/232-307 VNLARS..GAQYVVREGET.ILDVLR...N.A.GHHVTSSCRQ.......GI....CGMCETTLISGVP.....DHRD....RLLTDSEKASGRT...................M.LICCSRAL POBB_PSEPS/236-311 VHLARS..GRTIPIAAGCT.ILDALQ...A.G.GVAVPSSCQQ.......GV....CGICETAVLAGVP.....DHRD....LVLSDQERAAGRT...................M.MICCSGSK YEAX_ECOLI/237-313 LVLARS..GKEFVVPEEMT.ILQVIE...N.NKAAKVECLCRE.......GV....CGTCETAILEGEA.....DHRD....QYFSDEERASQQS...................M.LICCSRAK Q47914_SPHCR/241-316 VLARRS..GQEFTVEPGMT.ILETLL...Q.N.GISRNYSCTQ.......GV....CGTCETKVLEGEP.....DHRD....WVLSDEKKASNST...................M.LICCSLSK #=GR PDR_BURCE/241-314 SS EEES-- --EEEE-TTS- HHHHHH H T T-----S--- -- ----EEEEEE--E E--- SS--TT T---E E ETTT-EES PDR_BURCE/241-314 VRLSRS..GTSFEIPANRS.ILEVLR...D.A.NVRVPSSCES.......GT....CGSCKTALCSGEA.....DHRD....MVLRDD..EKGTQ...................I.MVCVSRAK PHT2_PSEPU/243-316 VTLGRS..GIDLEIPVDRS.ILEVLR...D.N.GIRAPSSCES.......GT....CGSCRTRLIEGDV.....EHRD....MVLREDEQH..DQ...................I.MICVSRAR O86347_MYCTU/231-301 LELARS..RRVLRVPANRS.ALDVML.....DWDPTTAYSCQQ.......GF....CGTCKVRVLAGQV.....DRRG....RIIEGDN.....E...................M.LVCVSRAV YFAE_ECOLI/4-77 VTLRIT..GTQLLCQDEHP.SLLAAL...E.SHNVAVEYQCRE.......GY....CGSCRTRLVAGQV......D......WIAEPLAFIQPGE...................I.LPCCCRAK Y1309_HAEIN/3-75 IHLIRH..NTTLEFNNET..SLLDHL...E.KNNIHHEYQCRS.......GY....CGSCRVKIKKGKV......S......YKEMPLAFIQPDE...................I.LLCCCHVE O31003_VIBAN/5-73 VIVKPS..GVEYQSG..RN.ILDDAF...A.S.SISLEHSCKT.......GD....CGVCCAEVISGLV.....ENEN........GELVTQG.H...................I.LTCQSKAK RFBI_SALTY/5-76 IKIFPS..NIEFSGREDES.ILDAAL...S.A.GIHLEHSCKA.......GD....CGICESDLLAGEVV....DSKG.........NIFGQGDK...................I.LTCCCKPK P95461_9PSED/17-94 VQILPQ..DVTIVLEPGQT.LLEAAL...A.N.GIAYPHDCTV.......GT....CASCKTRLKQGRVR...EATPF...GYTLSKAELDA.GY...................I.LACQAFPR O85971_SPHAR/13-90 VTVEGS..PTTLDIPAGKT.LLEAML...D.A.GLAMPHDCKV.......GS....CGTCKFKLVSGKIG...ELSPS...ALALEGDELRS.GF...................R.LACQAIPR XYLA_PSEPU/20-97 VSVRGQ..GFQFKVPRGQT.ILESAL...H.Q.GIAFPHDCKV.......GS....CGTCKYKLISGRVN...ELTSS...AMGLSGDLYQS.GY...................R.LGCQCIPK YCBX_ECOLI/293-362 IDWQGQ....AFRGNNQQV.LLEQLE.....NQGIRIPYSCRA.......GI....CGSCRVQLLEGEV......T.P......LKKSAMGDDGT....................ILCCSCVPK P96096_THIFE/9-86 HTRDKQ..QVSFVCSEAED.LLSAAD...R.G.SILLPSQCRK.......GT....CGACVATVTAGTYH...LGEVS..MEALPEKAQ.ARGDV.....................LLCRTYPR MMOC_METTR/7-81 ETEDGE..TCRRMR.PSED.WISR.A...E.A.ERNLLASCRA.......G.....CATCKADCTDGDYE...LIDVK..VQAVPPDEE.EDGKV.....................LLCRTFPR O85675_ACIAD/8-85 NFADGK..TFFIAVQEDEL.LLDAAV...R.Q.GINLPLDCRE.......GV....CGTCQGTCETGIYE...QEYVD..EDALSERDL.AKRKM.....................LACQTRVK #=GR BENC_ACIAD/19-98 SS E----- EEEEEE----- HHHHHH H T T---S-S--- -- ----EEEEEE-EEE --GGGS -TTT--HHHHH---E ETTT-EEE BENC_ACIAD/19-98 QFEDGV..TRFIRIAQGET.LSDAAY...R.Q.QINIPMDCRE.......GA....CGTCRAFCESGNYD...MPEDNY.IEDALTPEEAQQGYV.....................LACQCRPT XYLZ_PSEPU/8-86 DFEDGV..TRFIDANTGET.VADAAY...R.Q.GINLPLDCRD.......GA....CGACKCFAESGRYS...LGEE.YIEDALSEAEA.EQGYV.....................LTCQMRAE CBDC_BURCE/8-85 RFEDDV..TYFITSSEHET.VADAAY...Q.H.GIRIPLDCRN.......GV....CGTCKGFCEHGEYD...GGDY.I.EDALSADEA.REGFV.....................LPCQMQAR O66892_AQUAE/7-72 RYSDGDFRWEEYEVDGEGKTVLEILQNIKEIDPTLSFRAMCRA.......GI....CGTCVVKVN.....................GEHK..........................LACNTRVY O85226_PSEFL/27-86 VTA.AL..GETVLSVIQATGLRQVAR...N.DHGQLVGAYCGM.......GV....CHCCLVQIDG...................RHKR...........................RACQTLVK O29575_ARCFU/14-75 AYWQSFEVPAKR.GMTVLEALYYIKE...NLDSSLAFRASCRM.......GI....CGSCAMKIN.....................DKP..........................RLACETQVL O27878_METTH/21-82 PHLESYEIPSKE.KMKVLDALQLINK...IHGANIAFRSSCRA.......GQ....CGSCAVKMN.....................GEV..........................VLACRAEVE Y092_METJA/14-73 EYLESYEVP..E.NITVLEALEYINK...HYEANILFRASCRN.......AQ....CGSCAVTIN.....................GEP..........................RLACETKVE FER5_RHOCA/10-107 IMKKDK..TIYAVAGNTATILALAKE...H.AIPIPF..ECG........DG...DCASCLIEVTHLDN.....KPAMAMMLTEKEKARLKELQMITAEEIEAA..EVSDLPPRFRLACQFIPR Q44501_AZOVI/10-107 LMPHNK..KVQAVAGKRSTLLGVAQE...N.GVKIPF..ECQ........DG...NCGSCLVKITHLDG.....ERIKGMLLTDKERNVLKSVGKLPKSEEERA..AVRDLPPTYRLACQTIVT Q46508_DESFR/6-74 ITIDGK..TTSVPE...GSTILDAAK...T.L.DIDIPTLCYLNLEALSINNKAASCRVCVVE.....................VEGRRN....L....................APSCATPVT Q9ZBV9_STRCO/15-78 FTLDGQ..EARVPE...GSTILDACR...A.A.GKDVPTLCEGDT..LAPKN...ACRVCVVD.....................VEGART....L....................APACSRKAE NUOG_MYCTU/19-82 LTIDGV..EISVPK...GTLVIRAAE...L.M.GIQIPRFCDHPL..LEPVG...ACRQCLV.....................EVEGQR....KP....................LASCTTVAT O87815_CUPNE/22-85 LEVDGV..SVTVPA...GTSVMRAAM...E.A.QIAVPKLCATDS..LRNFG...SCRLCLV.....................EIEGRR....GY....................PASCTTPVE #=GR NQO3_THET8/4-88 SS EE-SS- EEEE-- --BHHHHHH H - ------SS--TT S---- ----SEEB-------------------------S S- EETTT-B-- NQO3_THET8/4-88 VKVNDR..IVEVPP...GTSVMDAVF...H.A.GYDVPLFCSEKH..LSPIG...ACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQP....KL....................AASCVTAVA P74022_SYNY3/6-69 LTIDDK..AIAIEE...GASILQAAK...E.A.GVPIPTLCHLEG..ISEAA...ACRLCMVE.....................VEGTNK....L....................MPACVTAVS P94157_SYNP6/6-69 LQIDDQ..ELAANV...GQTVLQVAR...E.A.SIPIPTLCHLQG..VSDVG...ACRLCVVE.....................VAGSPK....L....................QPACLLTVS Q44513_ANAVA/6-69 LTINDQ..LISAQE...EETLLQAAQ...E.A.GIHIPTLCHLEG..VGDVG...ACRLCLVE.....................VAGSNK....L....................LPACVTKVA P77908_MOOTH/4-67 LTIDGQ..RVTAPE...GMTILEVAR...E.N.GIHIPTLCHHPK..LRPLG...YCRLCLVD.....................IEGAAK....P....................MTACNTPVA Q9ZJW1_HELPJ/4-65 MNINGK..TIECQE...GQSVLEAAR...S.A.GIYIPTICYLSG..CSPTV...ACKMCMV........................EMDG...KR....................IYSCNTKAK O05397_BACSU/11-72 VRVDGT..EIQARA...GATILDILN...E.N.GIEYPQICHVPE..VDPIQ...TCDTCIV........................EANG...KL....................VRSCATVAE YJGC_BACSU/7-68 ITINGV..EMEASE...EQTVLQLLN...N.S.SIEVPQVCYHPS..LGPIE...TCDTCIV........................SING...EL....................KRSCSAELK NUOG_SALTI/4-72 IHVDGK....EYEVNGADN.LLQACL...S.L.GLDIPYFCWHPAL.GSVGA....CRQCAVK..................QYQNAEDTR...GR...................LVMSCMTPAT O66748_AQUAE/6-70 KIYIDD...VEIEAEKGKTVLQVALE..N....GIDIPYFCYHPR..LSIAG...ACRMCVVY.......................WEDINR......................LVISCNLPVQ NDUS1_DICDI/5-71 FKINEI..ECEVNEEKEDITILQACT...A.N.GIEIPRFCYHEK..LTIAG...NCRMCLV.....................YVTNEE....KL....................LAACGIPLD NQO3_PARDE/7-71 IKIDDT....IIEVDPNMT.LIQACE...M.A.GIEVPRFCYHER..LSIAG...NCRMCLVEVVGG........PPK........PA............................ASCAMQVK NDUS1_NEUCR/38-101 LTIDGK..KVSIEA...GSALIQACE...K.A.GVTIPRYCYHEK..LMIAG...NCRMCLV.....................EVEKVP....KP....................VASCAWPVQ NUOG_RICPR/4-67 LIIDGS..EIEISE...GSTVYQACI...Q.A.GKEIPHFCYHAR..LKIAG...NCRMCLV.....................EIEKSQ....KP....................VASCAMPVS NDUS1_SOLTU/70-133 VFVDGY..PVKIPK...GMTVLQACE...I.A.GVDIPRFCYHSR..LSIAG...NCRMCLV.....................EVEKSP....KP....................VASCAMPAL NDUS1_RECAM/4-67 VFVDGL..SVEVKK...GATILQACA...Q.V.GIEIPRFCYHER..LSIAG...NCRMCLV.....................EVEKSP....KP....................VASCAMPVM NDUS1_BOVIN/34-97 VFVDGQ..SVMVEP...GTTVLQACE...K.V.GMQIPRFCYHER..LSVAG...NCRMCLV.....................EIEKAP....KV....................VAACAMPVM O52683_THEMA/3-65 IYVDGR..EVIIN..DNERNLLEALK.....NVGIEIPNLCYLS.....EASIYGACRMCLVEIN.......................GQIT........................TSCTLKPY Q46606_DESVU/3-71 AFINGK..EVRCEP...GRTILEAAR...E.N.GHFIPTLCELADIGHAPGT....CRVCLVE.....................IWRDKEAGPQI....................VTSCTTPVE HOXU_CUPNH/5-66 ITIDGK..TLTTEE...GRTLVDVAA...E.N.GVYIPTLCYLKDK.PCLGT....CRVCSVKVN.....................GN......V....................AAACTVRVS P72305_RHOOP/5-66 IEIDGV..TVTTEE...SRTLVDVAA...E.A.GVYIPTLCYLKGK.PSLGT....CRVCSVK.....................LNGTV..........................VAACTIRVA Q59261_CLOSA/4-67 IVIDEK..TIQVQE...NTTVIQAAL...A.N.GIDIPSLCYLNEC.GNVGK....CGVCAVE.....................IEGKNN....L....................ALACITKVE Q9ZNE4_CLOPE/4-67 IIINDK..TIEFDG...DKTILDLAR...E.N.GFDIPVLCELKNC.GNKGQ....CGVCLVE.....................QEGNDR....L....................LRSCAIKAK PHF1_CLOPA/4-67 IIINGV..QFNTDE...DTTILKFAR...D.N.NIDISALCFLNNCNNDINK....CEICTVE.....................VEGTG.....L....................VTACDTLIE Q59262_CLOAB/4-66 IILNGN..EVHTDK...DITILELAR...E.N.NVDIPTLCFLKDC.GNFGK....CGVCMVE.....................VEGKG.....F....................RAACVAKVE P74801_SYNY3/5-63 IHFLPD..DVTVAARVGEPILDVAER......AGVFIPTGCLM.......GS....CHACEVELG.......................DGTP.......................ICACISAVP XDHE_BACSU/18-77 MTVNGQ..AWEV.AAVPTTHLSDLLR...KEFQLTGTKVSCGI.......GR....CGACSILID.....................GK......L....................ANACMTMAY #=GR HCRC_THAAR/7-66 SS EEE--- EEEE EEETT-BHHHHHH HT------------ -- ----EEEET TE E EEGGGSBGG HCRC_THAAR/7-66 LTLNGR..ARED.LVPDNMLLLDYLR...ETVGLTGTKQGCDG.......GE....CGACTVLVD.....................DR......P....................RLACSTLAH P95635_RHOPA/15-74 LNVNGR..WRED.AVTDDMLLVDYLR...DIAGLTGVKTGCDG.......GE....CGACTVLID.....................GE......A....................APSCLVLAV XDHC_ECOLI/11-69 CTINGM..PFQLHAAPGTP.LSELLR...E.QGLLSVKQGCCV.......GE....CGACTVLVD....................G..TAID.........................SCLYLAA YAGT_ECOLI/65-124 LKVNGK..TEQL.EVDTRTTLLDTLR...ENLHLIGTKKGCDH.......GQ....CGACTVLVN.....................GR......R....................LNACLTLAV DCMS_HYDPS/8-67 VNVNGK..AQEK.AVEPRTLLIHFLR...EELNLTGAHIGCET.......SH....CGACTVDID.....................GR......S....................VKSCTHLAV Q52589_9PSED/8-67 MTVNGR..KVEE.AVEARTLLVHFLR...EKLNLTGTHIGCDT.......SH....CGACTVDVD.....................GK......S....................IKSCTHLAV O52837_BRAJA/6-65 LIVNGN..PVTA.NVDPRTLLVQFLR...ENLRLTGTHVGCDT.......SQ....CGACVVHLD.....................GK......A....................VKSCTTLAV O53709_MYCTU/5-64 MTVNGE..PVTA.EVEPRMLLVHFLR...DQLRLTGTHWGCDT.......SN....CGTCVVEVD.....................GV......P....................VKSCTMLAV O87682_ARTNI/8-67 VEVNGV..THAT.DVEPRRLLADFLR...DDLHLRGTRVGCEH.......GV....CGSCTVLLD.....................GQ......P....................VRSCTVLAV Q59128_ARTNI/14-73 VEVNGR..RRTV.AVDARETLADHLR...NDQKLTGIKLGCEH.......GV....CGACTILMD.....................GA......A....................VRSCLTLAA #=GR P72223_PSEPU/14-73 SS EEE--- EEEE EE-TTSBHHHHHH HT------------ -- ----EEEE- -- E EEGGGSBGG P72223_PSEPU/14-73 ATINGK..PRVF.YVEPRMHLADALR...EVVGLTGTKIGCEQ.......GV....CGSCTILID.....................GA......P....................MRSCLTLAV Q9ZBN8_STRCO/5-65 LTVNGR..PQEADDVWEGESLLYVLR...ERMGLPGSKNACEQ.......GE....CGSCTVRLD.....................GVP..........................VCSCLVAAG #=GR O54050_RHOCA/5-68 SS EEE--- EEEEE-S-TT-BHHHHHH H ------------ -- ----EEEEES ----E E EETTTSBGG O54050_RHOCA/5-68 FLLNGE..TRRVRIEDPTQSLLELLR...A.EGLTGTKEGCNE.......GD....CGACTVMIRD.................AAGSR......A....................VNACLMMLP O23887_MAIZE/15-85 LAVNGK..RYEAAGVAPSTSLLEFLR...TQTPVRGPKLGCGE.......GG....CGACVVLVSK.................YDPATDEVTEFS....................ASSCLTLLH ALDO4_ARATH/8-78 FAVNGE..KFEVLSVNPSTTLLEFLR...SNTCFKSVKLSCGE.......GG....CGACIVILSK.................YDPVLDQVEEYS....................INSCLTLLC ALDO1_ARATH/23-95 FAINGQRFELELSSIDPSTTLVDFLR...NKTPFKSVKLGCGE.......GG....CGACVVLLSK.................YDPLLEKVDEFT....................ISSCLTLLC O30328_ACEEU/4-63 FRLNGR..EVTV.DVPGDTPLLWVIR...DEVGLTGTKFGCGI.......GM....CGACTIHIG.....................GR......A....................TRSCVTPVS IORA_BREDI/4-64 FILNGQ..PVRVTEVPEDAPLLWVVR...EHLKLSGTKFGCGL.......GL....CGACTVHIN.....................GE......A....................ARSCITPLS XDH_EMENI/39-108 FYLNGT..KVILDSVDPEITLLEYLR...G.IGLTGTKLGCAE.......GG....CGACTVVVS..........QIN.....PTTKKL....YHA..................SINACIAPLV O61198_CAEEL/8-78 FNVNGK..DIKEENVDPELTLAYYLR...NKLGLRGTKLGCEE.......GV....CGSCTVVLGT.................WDDSLNKAVYSA....................VNACLVPLF O17892_CAEEL/18-86 FYVNGK..RVEEKDVDPKMTLATYLR...DKLKLTGTKIGCNE.......GG....CGACTIMISH.................IENGE..IKHFS....................ANSCLMPVC XDH_DROSU/13-83 FFVNGK..KVTDTNPDPECTLLTYLR...DKLRLCGTKLGCAE.......GG....CGACTVMISR.................MDRGQHKIRHLA....................VNACLTPVC O17506_BOMMO/19-89 FYVNGK..KVIESSPDPEWTLLWYLR...KKLRLTGTKLGCAE.......GG....CGACTVMVSK.................YNRQENKIIHLA....................VNACLAPVC Q17250_BOMMO/18-88 FFVNGK..KVLESNPDPEWTLLFYLR...KKLKLTGTKYGCGE.......GG....CGACTVMVSK.................YLKNEDRINHIA....................VNACLISVC ADO_BOVIN/9-79 FYVNGR..KVTEKNVDPETMLLPYLR...KKLRLTGTKYGCGG.......GG....CGACTVMISR.................YNPITKKIRHYP....................ANACLTPIC #=GR XDH_BOVIN/8-78 SS EEE--- EEEETT--TT-BHHHHHH HT------------ -- ----EEE EEE EETTTTEEEEEE EETTT-BGG XDH_BOVIN/8-78 FFVNGK..KVVEKNADPETTLLAYLR...RKLGLRGTKLGCGE.......GG....CGACTVM............LSK.....YDRLQDKIIHFS....................ANACLAPIC #=GR MOP_DESGI/6-65 SS EEE--- EEEE EE-TTSBHHHHHH HT------------ -- ----EEEE- -- E EEGGG-BGG MOP_DESGI/6-65 ITVNGI..EQNL.FVDAEALLSDVLR...QQLGLTGVKVGCEQ.......GQ....CGACSVILD.....................GK......V....................VRACVTKMK O53669_MYCTU/13-78 DESCGELREFTVEVNEGEVVLDVILRLQQTQTPDLAVRWNCKA.......GK....CGSCSAEIN.....................GKPR..........................LMCMTRMS O29566_ARCFU/5-80 TFL.PS..GKRAEVDEGKTILSAAQE...I.GEGIRS..LCGG.......KG...SCGKCL..VVVR........KGDVEILSEEAHEKFVRE..K.................GYYLACQTAVK O30225_ARCFU/5-84 TFE.PV..GKKVE.DEPDTILEIARR...N.GVLIRS..DCGG.......KG...VCGKCK..VVVVDY......RGSLSDITDHERKHLIEEEISK................GYRLACQARVE NQRF_CHLTR/46-122 NND.DS..LTKTV.DSGKTLLSSLLD...S.GIAIPS..PCGG.......KA...ACKQCK..VRIT.........KNADEPLETDRSTFSKQQLEQ................GWRLSCQTKVQ NQRF_HAEIN/43-119 NDD.PE..KAITL.PAGGKLLGALAS...K.GIFVSS..ACGG.......GG...SCGQCI..VKVK.........NGGGEILPTELSHINKREAKE................GYRLACQVNVK NQRF_VIBAL/39-115 NDD.PS..LAIVT.QPGGKLLSALAG...A.GVFVSS..ACGG.......GG...SCGQCR..VKVK.........SGGGDILPTELDHITKGEARE................GERLACQVAMK O84062_CHLTR/8-83 ADD......ENQEFHLEDGSSIAEV......CEHSGVPLACT........EG...VCGTCVIEVLEGA........DNLSDFSEAEYDFLGDPEDS.................NERLACQCCIK Q9Z8H9_CHLPN/8-83 SDD......EQQEFELEDNSEIAEP......CESMGIPFACT........EG...VCGTCVIEVLEGR........ENLSEFTEPEYDFLGEPEDS.................NERLACQCRIK CSMJ_CHLTE/5-82 IND......KPCNAKVGDLLLNTAK......LNKAHIGYICGG.......NG...ICQSCFVYVLEGA........ECLSEPGEDEKAFISDKLFAE................GGRLACRTTIV CSMI_CHLTE/5-82 IND......KTASSSVGQTIGKAAR......LNHAHVGYVCGG.......HG...LCQACYITVQEGA........DCLAPLTDVEKAFLSPRQIAA................GGRIACQATIA #=GR FER_TRIVA/13-90 SS EE----EEEE---TTEEHHHHHHT-- ----TTS--- -- -----EEEEEE--- - - - HHHHHHCTTS-TT EEEGGG-EE- FER_TRIVA/13-90 AVKGGVKKQLKFEDDQTLFTVLTEAG.......LMSADDTCQG.......NK...ACGKCICKHVSGKV......A.A..E..DDEKEFLEDQPAN..................ARLACAITLS P73774_SYNY3/7-88 LICLPD..NRLLEIDSNETILDALLK..G....DIAHISVCGG.......KA...NCSTCRIMVLDGIK.....NCSPPTSIEQALAKKLDFPFHV..................R.LACQTKLS FER_BUCAP/10-92 KLLLPK..GGCFECKEGETILNVALK...N.NIKLEHA..CEK.......SC...ACSTCH..CIIRKG......FLSLSGWSEKEEDVLDKAWGLE...............STSRLSCQAIIG O69222_AZOVI/11-93 EVHCPE..GRVVEAETGESILEAALR...N.DIEIEHA..CEM.......SC...ACTTCH..VIVRDG......FDSLEPSDELEDDMLDKAWGLE...............PESRLSCQARVG FER_HAEIN/10-92 EDFCPE..GMVVDAATGDN.LLEVAH...N.A.GVEIHHACDG.......SC...ACTTCHVIVREG........FDSLNETSDQEEDMLDKAWGLE...............MDSRLSCQCVVG FER_PSEAE/10-92 ADHCPE..GAVFEAKPGET.ILDAAL...R.N.GIEIEHACEK.......SC...ACTTCHVIVREG........LDSMEPSDELEDDMLDKAWGLE...............PDSRLSCQAVVA ADRX_YEAST/67-149 LKD.GS..QKTYEVCEGETILDIAQG...H.NLDMEG..ACGG.......SC...ACSTCH.VIVDPDY......YDALPEPEDDENDMLDLAYGLT...............ETSRLGCQIKMS ADX_PIG/71-155 NRD.GK..TLTTQGKVGDSLLDVVIE...N.NLDIDGFGACEG.......TL...ACSTCH.LIFEDHI......FEKLEAITDEENDMLDLAYGLT...............DRSRLGCQICLT FER2_RICPR/11-93 IND.EE..ERTVEAPIGLSILEIAHS...N.DLDLEG..ACEG.......SL...ACATCH.VMLEEEF......YNKLKKPTEAEEDMLDLAFGLT...............DTSRLGCQIILT O49551_ARATH/44-127 DKD.GE..EIHIKVPVGMNILEAAHE...N.DIELEG..ACEG.......SL...ACSTCHVIVMDTKY......YNKLEEPTDEENDMLDLAFGLT...............ATSRLGCQVIAK #=GR ETP1_SCHPO/525-592 SS --- -- EEEE- -- - - - ---- -- --STT-EEE-HHHH HHS- ---HHHHHHHCTB---- TTEE-----B-- ETP1_SCHPO/525-592 TPE.GR..EIMIE....GN......E...E.G.......ACEG.......SV...ACSTCHVIVDPEHY.....ELLD..PPEEDEEDMLDLAFGLE...............ETSRLGCQVLLR O07876_SPHSX/8-91 AAD.GR..EIETNVDIGTDLMHAGLY...N.SVPGLLG.ECSG.......GL...ACATCR.VHVPAEW......QGVLPAALPAEAELLGFCEESP...............PEARLSCQIKMT Q9ZAM5_SPHSX/8-91 SED.GS..ELETTVDVGVDLMHAGLY...N.SIPGILG.ECSG.......GL...ACATCR.VRVPVEW......QSILPPAFPSEAELLGFCDEAP...............PEARLSCQIKMT FER2_CAUCR/8-91 QHD.GA..EQVIDVKPGLTVMEGAVK...N.NVPGIDA.DCGG.......AC...ACATCH.VYVDEAW......LDKTGDKSAMEESMLDFAENVE...............PNSRLSCQIKVS #=GR FER6_RHOCA/7-91 SS --- -- EEEEE-----BHHHHHHT - ------- ---- -- SS-TTE EEE-HHH HTTS----HHHHHHHTTSSS--T TTEEEGGG-B-- FER6_RHOCA/7-91 EHN.GT..RHEVEAKPGLTVMEAARD...N.GVPGIDA.DCGG.......AC...ACSTCH.AYVDPAW......VDKLPKALPTETDMIDFAYEPNP..............ATSRLTCQIKVT P74447_SYNY3/31-113 IKLDPIDLKVAIETNDNLLSGLLGQD........LRIMKECGG.......RG...MCATCHVYITAGMES...LSPLNRREQRTLEVITTHNRYS...................R.LACQARVL P73171_SYNY3/7-85 SFPQTKFLPLSLEFNACLAEYLTPDN........SPILFGCRT.......GL....CGTCLVKVVGEIL......SPEAEEREILAILAPDDVQA...................R.LACQIKLT FER1_AQUAE/3-83 VIINGK....EFDIPKGVRFGELSHE.....IEKAGIEFGCTD.......GQ....CGVCVARVIKGMECL..NEPSEEEEETLWRVGAVDEDQR.....................LTCQLVIE FER4_RHOCA/7-86 TFTDVS...ITVNVPTGTRIIEMSEK......VGSGITYGCRE.......GE....CGTCMTHILEGSE.....NLSEPTALEMRVLEENLGGKD...................DRLACQCRVL P74283_SYNY3/5-88 FVKEQK....DIVVAQGANLREKALQNGVDIYTLKGKLMNCGG......YGQ....CGTCIVEITAGME.....NLSPKTDFENRVLRKKPDNFR.....................LACQTLVN #=GR PUTX_PSEPU/8-92 SS E-- -- EEEEE-----B HHHHHH H ---TTG------ -- SSSTTEEEE- TTTGTTS- ---TTT---GGGSSS---TTEEEGGG-B-- PUTX_PSEPU/8-92 SHD.GT..RRELDVADGVS.LMQAAV...S.NGIYDIVGDCGG.......SA...SCATCHVYVN................EAFTDKVP.....AANEREIGMLECVTAELKPNSRLCCQIIMT TERPB_PSESP/8-92 DEQSGE...YAVDAQDGQS.LMEVAT...Q.NGVPGIVAECGG.......SC...VCATCRIEIEDAWV......E.......IVGEANPDENDLLQSTGE........PMTAGTRLSCQVFID P95277_MYCTU/9-84 GYSDGT..HKTMPVRCDQT.VLDAAE.....EHGVAIVNECQS.......GI....CGTCVATCTAGRYQ....MG.R...TEGLSDVERAARKI.....................LTCQTFVT O05933_PSEPU/11-88 NFSDGV..SRSFDVEAGTS.ILDAAI.....ESEIPLLYQCRS.......GS....CSTCIAQLTEGEAH....TRAG..ASSTLLASEYASGQR.....................LLCLCQAQ DESET_MYCTU/303-373 FARSGK....SVAADAATS.LMDAGE.....GAGVQLPFGCRM.......GI....CQSCVVDLVEGHV......R.D.....LRTGQRHEPGTR....................VQTCVSAAS O23344_ARATH/57-131 VEHDGK..TTELEVEPDETILSKALD...S...GLDVPYDCNL.......GV....CMTCPAKLVTGTV.....DQSG....GMLSDDVVERGYT.....................LLCASYPT P74159_SYNY3/11-86 DRQNEK..DYSVIVSDDRYILHQAED...Q...GFELPFSCRN.......GA....CTACAVRVISGQIH....QP....EAMGLSPDLQRQGYA.....................LLCVSYAQ FER2_SYNP6/8-83 VIYQGQ..SQTFTADSDQS.VLDSAQ...A.A.GVDLPASCLT.......GV....CTTCAARILSGEV.....DQPD...AMGVGPEPAKQGYT.....................LLCVAYPR P73388_SYNY3/9-84 IQHQGQ..TYTISVPEDKT.VLQAAD...D.E.GIQLPTSCGA.......GV....CTTCAALITEGTA.....EQAD...GMGVSAELQAEGYA.....................LLCVAYPR FER1_HALMA/35-108 DEDYGS.....LEVNEGEY.ILEAAE...A.Q.GYDWPFSCRA.......GA....CANCAAIVLEGDI.....DM..D.MQQILSDEEVEDKNV....................RLTCIGSPD P74449_SYNY3/11-88 NPATGS..DVTIEVAEDEL.ILEAAE...N.Q.GLDLPYSCRA.......AS....CVACAGRLLEGTVE...HTDKG...SDFLKPEELAAGCV.....................LLCAAYAT FER2_NOSMU/10-85 NAAEGL..DETIEVPDDEY.ILDAAE...E.A.GLDLPFSCRS.......GS....CSSCNGILKKGTV.....DQSD...QNFLDDDQIAAGNV.....................LTCVAYPT FER2_APHSA/10-86 NEEEGI..NAILEVADDQT.ILDAGE...E.A.GLDLPSSCRA.......GS....CSTCAGKLVSGAA.......PNQDDQAFLDDDQLAAGWV.....................MTCVAYPT FER1_CYAPA/10-85 CEEQGL..DTTIECPDDEY.ILDAAE...E.Q.GIDLPYSCRA.......GA....CSTCAGKVVEGTV.....DQSD...QSFLDDAQLAAGYV.....................LTCVAYPS FER_PORPU/10-85 SEDEGI..DVTFDCSEDTY.ILDAAE...E.A.GIELPYSCRA.......GA....CSTCAGKVTEGSV.....DQSD...QSFLDDEQLLKGYV.....................LTCIAYPE FER_ODOSI/10-85 SEEHDI..DATIDCNDDVF.LLDAAE...E.Q.GIELPYSCRA.......GA....CSTCAGKVTEGDI.....DQSE...QTFLDDDQVGAGFV.....................LTCIAYPK FER_BUMFI/9-84 NEEKNI..NAVIKCPDDQF.ILDAAE...E.Q.GIELPYSCRA.......GA....CSTCAGKVLSGTI.....DQSE...QSFLDDDQMGAGFL.....................LTCVAYPT FER3_CYACA/9-84 NKDQGI..DETIECPDDQY.ILDAAE...E.Q.GLDLPYSCRA.......GA....CSTCAGKLLEGEV.....DQSD...QSFLDDDQVKAGFV.....................LTCVAYPT FER2_CYACA/8-83 NQKEGV..DVTINCPGDQY.ILDAAE...E.Q.GVDLPYSCRA.......GA....CSTCAGKLVKGSV.....DQSD...QSFLDEEQINNGFI.....................LTCVAYPT FER_BRYMA/8-83 KLDDGS..EAVIDCDEDSF.ILDVAE...E.E.GIDIPFSCRS.......GS....CSTCAGKIEGGTV.....DQSE...QTFLDDDQMEEGYV.....................LTCVAYPT FER_APHSA/9-83 KTPDGD..NVIT.VPDDEY.ILDVAE...E.E.GLDLPYSCRA.......GA....CSTCAGKLVSG........PAPDEDQSFLDDDQIQAGYI.....................LTCVAYPT FER_THEVL/9-84 VRPDGS..ETTIDVPEDEY.ILDVAE...E.Q.GLDLPFSCRA.......GA....CSTCAGKLLEGEV.....DQSD...QSFLDDDQIEKGFV.....................LTCVAYPR FER_PERBI/6-80 DTPDGK...KSFECPGDSY.ILDKAE...E.E.GLELPYSCRA.......GS....CSSCAGKVLTGSI.....DQSD...QAFLDDDQGGDGYC.....................LTCVTYPT FER3_RAPSA/8-82 ITPEGE...QEVECDDDVY.VLDAAE...E.A.GIDLPYSCRA.......GS....CSSCAGKVVSGSV.....DQSD...QSFLDDDQIAEGFV.....................LTCAAYPT FER1_SPIOL/58-132 VTPTGN...VEFQCPDDVY.ILDAAE...E.E.GIDLPYSCRA.......GS....CSSCAGKLKTGSL.....NQDD...QSFLDDDQIDEGWV.....................LTCAAYPV FER_SILPR/57-131 TKESGT...VTFDCPDDVY.VLDQAE...E.E.GIDLPYSCRA.......GS....CSSCAGKVVAGSV.....DQSD...QSFLDDDQIEAGWV.....................LTCAAYPS FER_WHEAT/54-128 VTPEGE...VELEVPDDVY.ILDQAE...E.E.GIDLPYSCRA.......GS....CSSCAGKLVSGEI.....DQSD...QSFLDDDQMEAGWV.....................LTCHAYPK FER_SAMNI/8-82 ITPDGP...QEFECPDDVY.ILEHAE...E.L.GIDIPYSCRA.......GS....CSSCAGKLVAGSV.....DQSD...QSFLDDEQIEEGWV.....................LTCVAYPK FERA_ALOMA/8-82 VTPQGQ...QEFDCPDDVY.ILDQAE...E.E.GIDLPYSCRA.......GS....CSSCAGKVKQGEV.....DQSD...GSFLDDEQMEQGWV.....................LTCVAFPT FER_ARCLA/8-82 ITPEGK...QEFEVPDDVY.ILDHAA...E.E.VGDLPYSCRA.......GS....CSSCAGKVTAGSV.....DQSD...GSYLDDDQMEAGWV.....................LTCVAYPT FER_DATST/8-82 VTPDGP...VEFNCPDDVY.ILDQAE...E.E.GHDLPYSCRA.......GS....CSSCAGKVTAGTV.....DQSD...GNYLDDDQMADGFV.....................LTCVAYPQ FER_PALPL/9-83 STPGGV...EEIEGDETTY.VLDSAE...D.Q.GIDLPYSCRA.......GA....CSTCAGIVELGTV.....DQSD...QSFLDDDQLNDSFV.....................LTCVAYPT FER_EUGVI/8-82 INPDGE..VTI.ECGEDQY.ILDAAE...D.A.GIDLPYSCRA.......GA....CSSCTGIVKEGTV.....DQSD...QSFLDDDQMAKGFC.....................LTCTTYPT FER_CHLFU/6-80 KTPSGE...ETIECPEDTY.ILDAAE...E.A.GLDLPYSCRA.......GA....CSSCAGKVESGEV.....DQSD...QSFLDDAQMGKGFV.....................LTCVAYPT FER_SYNY4/9-83 ITPDGE...NSIECSDDTY.ILDAAE...E.A.GLDLPYSCRA.......GA....CSTCAGKITAGSV.....DQSD...QSFLDDDQIEAGYV.....................LTCVAYPT FER1_PHYAM/8-82 VTPSGT...QTIDCPDDTY.VLDAAE...E.A.GLDLPYSCRA.......GS....CSSCTGKVTAGTV.....DQED...QSFLDDDQIEAGFV.....................LTCVAFPK FER2_PHYAM/9-83 VTPSGT...NTITCPADTY.VLDAAE...E.S.GLDLPYSCRA.......GA....CSSCAGKVTAGAV.....NQED...GSFLEEEQMEAGWV.....................LTCVAYPT FER2_SPIOL/8-82 VTPSGS...QVIECGDDEY.ILDAAE...E.K.GMDLPYSCRA.......GA....CSSCAGKVTSGSV.....DQSD...QSFLEDGQMEEGWV.....................LTCIAYPT FER_PHYPA/57-132 DGETGA..ENVXECSDEEY.XLDAAE...R.A.GMDLPYSCRA.......GA....CSSCAGIIKAGEV.....DQSD...QSFLDDSQIDDGFV.....................LTCVAYPA FER_MARPO/7-81 NTPTGQ...SVIDVEDDEY.ILDAAE...E.A.GLSLPYSCRA.......GA....CSSCAGKVTAGEV.....DQSD...ESFLDDDQMDEGYV.....................LTCIAYPT #=GC SS_cons EEESS-EEEEEEEEEETTCBHHHHHH...HTT-TTTGTTSS--TT..S..--...SSSTTEEEEEEHCEE....EHCCS..TTHHHHHHHTTSSET-TTT---GGGSSS---TTEEECCCSBGG #=GC seq_cons hphsup..thphpsssspp.lLcshc...p.t.slslshuCps.......Gs....CusCtsplhtu.................hpspphttt.h.....................LuCtshsp // <<EOF File format identified as Stockholm Check sequence: FER_GLEJA/8-82 Checking feature equivalence. No annotations Check sequence: FER2_RAPSA/9-84 Checking feature equivalence. No annotations Check sequence: Q39648_CITSI/61-136 Checking feature equivalence. No annotations Check sequence: FER3_MAIZE/63-138 Checking feature equivalence. No annotations Check sequence: FER6_MAIZE/66-141 Checking feature equivalence. No annotations Check sequence: FER1_SYNP2/9-83 Checking feature equivalence. No annotations Check sequence: FER1_EQUAR/7-81 Checking feature equivalence. No annotations Check sequence: FER2_EQUAR/7-80 Checking feature equivalence. Check sequence: FER2_PLEBO/10-85 Checking feature equivalence. No annotations Check sequence: P95533_PSEPU/253-328 Checking feature equivalence. No annotations Check sequence: KSHB_MYCTU/273-348 Checking feature equivalence. No annotations Check sequence: Q44253_ACISP/251-326 Checking feature equivalence. No annotations Check sequence: Q59656_PLEBO/573-647 Checking feature equivalence. No annotations Check sequence: P71846_MYCTU/600-675 Checking feature equivalence. No annotations Check sequence: O84985_PSEPU/271-347 Checking feature equivalence. No annotations Check sequence: PAAE_ECOLI/266-342 Checking feature equivalence. No annotations Check sequence: HCR_ECOLI/241-316 Checking feature equivalence. No annotations Check sequence: O87803_PSEST/5-82 Checking feature equivalence. No annotations Check sequence: TMOF_PSEME/4-81 Checking feature equivalence. No annotations Check sequence: O32476_PSESP/4-81 Checking feature equivalence. No annotations Check sequence: Q51944_BURPI/5-82 Checking feature equivalence. No annotations Check sequence: Q53028_RHOCO/4-80 Checking feature equivalence. No annotations Check sequence: Q45344_BURPI/10-88 Checking feature equivalence. No annotations Check sequence: Q9ZNP1_COMTE/9-88 Checking feature equivalence. No annotations Check sequence: Q9Z418_PSEPU/11-90 Checking feature equivalence. No annotations Check sequence: Q9ZAN6_9BURK/12-91 Checking feature equivalence. No annotations Check sequence: FERN_PSEPU/7-85 Checking feature equivalence. No annotations Check sequence: O24827_ACISP/7-85 Checking feature equivalence. No annotations Check sequence: FERX_PSEPU/8-86 Checking feature equivalence. No annotations Check sequence: Q52061_PSEPU/8-86 Checking feature equivalence. No annotations Check sequence: Q52167_PSEPU/8-86 Checking feature equivalence. No annotations Check sequence: O84964_9RALS/4-82 Checking feature equivalence. No annotations Check sequence: Q9Z3W9_9SPHN/8-85 Checking feature equivalence. No annotations Check sequence: DMPP_PSEUF/5-82 Checking feature equivalence. No annotations Check sequence: O84963_9RALS/4-81 Checking feature equivalence. No annotations Check sequence: Q52574_PSESP/5-83 Checking feature equivalence. No annotations Check sequence: Q9ZNP2_COMTE/5-82 Checking feature equivalence. No annotations Check sequence: Q43983_ACICA/5-82 Checking feature equivalence. No annotations Check sequence: O87617_PSEAE/3-78 Checking feature equivalence. No annotations Check sequence: O52378_9RALS/3-78 Checking feature equivalence. No annotations Check sequence: Q51492_PSEAE/3-78 Checking feature equivalence. No annotations Check sequence: NDOR_PSEPU/3-78 Checking feature equivalence. No annotations Check sequence: Q52140_PSEPU/3-78 Checking feature equivalence. No annotations Check sequence: Q9Z9X8_9GAMM/242-317 Checking feature equivalence. No annotations Check sequence: VANB_PSEUH/234-309 Checking feature equivalence. No annotations Check sequence: VANB_PSES9/231-306 Checking feature equivalence. No annotations Check sequence: VANB_PSEPU/231-307 Checking feature equivalence. No annotations Check sequence: VANB_ACIAD/234-309 Checking feature equivalence. No annotations Check sequence: O88034_STRCO/230-305 Checking feature equivalence. No annotations Check sequence: P94680_COMTE/234-309 Checking feature equivalence. No annotations Check sequence: CBAB_COMTE/232-307 Checking feature equivalence. No annotations Check sequence: POBB_PSEPS/236-311 Checking feature equivalence. No annotations Check sequence: YEAX_ECOLI/237-313 Checking feature equivalence. No annotations Check sequence: Q47914_SPHCR/241-316 Checking feature equivalence. No annotations Check sequence: PDR_BURCE/241-314 Checking feature equivalence. Check sequence: PHT2_PSEPU/243-316 Checking feature equivalence. No annotations Check sequence: O86347_MYCTU/231-301 Checking feature equivalence. No annotations Check sequence: YFAE_ECOLI/4-77 Checking feature equivalence. No annotations Check sequence: Y1309_HAEIN/3-75 Checking feature equivalence. No annotations Check sequence: O31003_VIBAN/5-73 Checking feature equivalence. No annotations Check sequence: RFBI_SALTY/5-76 Checking feature equivalence. No annotations Check sequence: P95461_9PSED/17-94 Checking feature equivalence. No annotations Check sequence: O85971_SPHAR/13-90 Checking feature equivalence. No annotations Check sequence: XYLA_PSEPU/20-97 Checking feature equivalence. No annotations Check sequence: YCBX_ECOLI/293-362 Checking feature equivalence. No annotations Check sequence: P96096_THIFE/9-86 Checking feature equivalence. No annotations Check sequence: MMOC_METTR/7-81 Checking feature equivalence. No annotations Check sequence: O85675_ACIAD/8-85 Checking feature equivalence. No annotations Check sequence: BENC_ACIAD/19-98 Checking feature equivalence. Check sequence: XYLZ_PSEPU/8-86 Checking feature equivalence. No annotations Check sequence: CBDC_BURCE/8-85 Checking feature equivalence. No annotations Check sequence: O66892_AQUAE/7-72 Checking feature equivalence. No annotations Check sequence: O85226_PSEFL/27-86 Checking feature equivalence. No annotations Check sequence: O29575_ARCFU/14-75 Checking feature equivalence. No annotations Check sequence: O27878_METTH/21-82 Checking feature equivalence. No annotations Check sequence: Y092_METJA/14-73 Checking feature equivalence. No annotations Check sequence: FER5_RHOCA/10-107 Checking feature equivalence. No annotations Check sequence: Q44501_AZOVI/10-107 Checking feature equivalence. No annotations Check sequence: Q46508_DESFR/6-74 Checking feature equivalence. No annotations Check sequence: Q9ZBV9_STRCO/15-78 Checking feature equivalence. No annotations Check sequence: NUOG_MYCTU/19-82 Checking feature equivalence. No annotations Check sequence: O87815_CUPNE/22-85 Checking feature equivalence. No annotations Check sequence: NQO3_THET8/4-88 Checking feature equivalence. Check sequence: P74022_SYNY3/6-69 Checking feature equivalence. No annotations Check sequence: P94157_SYNP6/6-69 Checking feature equivalence. No annotations Check sequence: Q44513_ANAVA/6-69 Checking feature equivalence. No annotations Check sequence: P77908_MOOTH/4-67 Checking feature equivalence. No annotations Check sequence: Q9ZJW1_HELPJ/4-65 Checking feature equivalence. No annotations Check sequence: O05397_BACSU/11-72 Checking feature equivalence. No annotations Check sequence: YJGC_BACSU/7-68 Checking feature equivalence. No annotations Check sequence: NUOG_SALTI/4-72 Checking feature equivalence. No annotations Check sequence: O66748_AQUAE/6-70 Checking feature equivalence. No annotations Check sequence: NDUS1_DICDI/5-71 Checking feature equivalence. No annotations Check sequence: NQO3_PARDE/7-71 Checking feature equivalence. No annotations Check sequence: NDUS1_NEUCR/38-101 Checking feature equivalence. No annotations Check sequence: NUOG_RICPR/4-67 Checking feature equivalence. No annotations Check sequence: NDUS1_SOLTU/70-133 Checking feature equivalence. No annotations Check sequence: NDUS1_RECAM/4-67 Checking feature equivalence. No annotations Check sequence: NDUS1_BOVIN/34-97 Checking feature equivalence. No annotations Check sequence: O52683_THEMA/3-65 Checking feature equivalence. No annotations Check sequence: Q46606_DESVU/3-71 Checking feature equivalence. No annotations Check sequence: HOXU_CUPNH/5-66 Checking feature equivalence. No annotations Check sequence: P72305_RHOOP/5-66 Checking feature equivalence. No annotations Check sequence: Q59261_CLOSA/4-67 Checking feature equivalence. No annotations Check sequence: Q9ZNE4_CLOPE/4-67 Checking feature equivalence. No annotations Check sequence: PHF1_CLOPA/4-67 Checking feature equivalence. No annotations Check sequence: Q59262_CLOAB/4-66 Checking feature equivalence. No annotations Check sequence: P74801_SYNY3/5-63 Checking feature equivalence. No annotations Check sequence: XDHE_BACSU/18-77 Checking feature equivalence. No annotations Check sequence: HCRC_THAAR/7-66 Checking feature equivalence. Check sequence: P95635_RHOPA/15-74 Checking feature equivalence. No annotations Check sequence: XDHC_ECOLI/11-69 Checking feature equivalence. No annotations Check sequence: YAGT_ECOLI/65-124 Checking feature equivalence. No annotations Check sequence: DCMS_HYDPS/8-67 Checking feature equivalence. No annotations Check sequence: Q52589_9PSED/8-67 Checking feature equivalence. No annotations Check sequence: O52837_BRAJA/6-65 Checking feature equivalence. No annotations Check sequence: O53709_MYCTU/5-64 Checking feature equivalence. No annotations Check sequence: O87682_ARTNI/8-67 Checking feature equivalence. No annotations Check sequence: Q59128_ARTNI/14-73 Checking feature equivalence. No annotations Check sequence: P72223_PSEPU/14-73 Checking feature equivalence. Check sequence: Q9ZBN8_STRCO/5-65 Checking feature equivalence. No annotations Check sequence: O54050_RHOCA/5-68 Checking feature equivalence. Check sequence: O23887_MAIZE/15-85 Checking feature equivalence. No annotations Check sequence: ALDO4_ARATH/8-78 Checking feature equivalence. No annotations Check sequence: ALDO1_ARATH/23-95 Checking feature equivalence. No annotations Check sequence: O30328_ACEEU/4-63 Checking feature equivalence. No annotations Check sequence: IORA_BREDI/4-64 Checking feature equivalence. No annotations Check sequence: XDH_EMENI/39-108 Checking feature equivalence. No annotations Check sequence: O61198_CAEEL/8-78 Checking feature equivalence. No annotations Check sequence: O17892_CAEEL/18-86 Checking feature equivalence. No annotations Check sequence: XDH_DROSU/13-83 Checking feature equivalence. No annotations Check sequence: O17506_BOMMO/19-89 Checking feature equivalence. No annotations Check sequence: Q17250_BOMMO/18-88 Checking feature equivalence. No annotations Check sequence: ADO_BOVIN/9-79 Checking feature equivalence. No annotations Check sequence: XDH_BOVIN/8-78 Checking feature equivalence. Check sequence: MOP_DESGI/6-65 Checking feature equivalence. Check sequence: O53669_MYCTU/13-78 Checking feature equivalence. No annotations Check sequence: O29566_ARCFU/5-80 Checking feature equivalence. No annotations Check sequence: O30225_ARCFU/5-84 Checking feature equivalence. No annotations Check sequence: NQRF_CHLTR/46-122 Checking feature equivalence. No annotations Check sequence: NQRF_HAEIN/43-119 Checking feature equivalence. No annotations Check sequence: NQRF_VIBAL/39-115 Checking feature equivalence. No annotations Check sequence: O84062_CHLTR/8-83 Checking feature equivalence. No annotations Check sequence: Q9Z8H9_CHLPN/8-83 Checking feature equivalence. No annotations Check sequence: CSMJ_CHLTE/5-82 Checking feature equivalence. No annotations Check sequence: CSMI_CHLTE/5-82 Checking feature equivalence. No annotations Check sequence: FER_TRIVA/13-90 Checking feature equivalence. Check sequence: P73774_SYNY3/7-88 Checking feature equivalence. No annotations Check sequence: FER_BUCAP/10-92 Checking feature equivalence. No annotations Check sequence: O69222_AZOVI/11-93 Checking feature equivalence. No annotations Check sequence: FER_HAEIN/10-92 Checking feature equivalence. No annotations Check sequence: FER_PSEAE/10-92 Checking feature equivalence. No annotations Check sequence: ADRX_YEAST/67-149 Checking feature equivalence. No annotations Check sequence: ADX_PIG/71-155 Checking feature equivalence. No annotations Check sequence: FER2_RICPR/11-93 Checking feature equivalence. No annotations Check sequence: O49551_ARATH/44-127 Checking feature equivalence. No annotations Check sequence: ETP1_SCHPO/525-592 Checking feature equivalence. Check sequence: O07876_SPHSX/8-91 Checking feature equivalence. No annotations Check sequence: Q9ZAM5_SPHSX/8-91 Checking feature equivalence. No annotations Check sequence: FER2_CAUCR/8-91 Checking feature equivalence. No annotations Check sequence: FER6_RHOCA/7-91 Checking feature equivalence. Check sequence: P74447_SYNY3/31-113 Checking feature equivalence. No annotations Check sequence: P73171_SYNY3/7-85 Checking feature equivalence. No annotations Check sequence: FER1_AQUAE/3-83 Checking feature equivalence. No annotations Check sequence: FER4_RHOCA/7-86 Checking feature equivalence. No annotations Check sequence: P74283_SYNY3/5-88 Checking feature equivalence. No annotations Check sequence: PUTX_PSEPU/8-92 Checking feature equivalence. Check sequence: TERPB_PSESP/8-92 Checking feature equivalence. No annotations Check sequence: P95277_MYCTU/9-84 Checking feature equivalence. No annotations Check sequence: O05933_PSEPU/11-88 Checking feature equivalence. No annotations Check sequence: DESET_MYCTU/303-373 Checking feature equivalence. No annotations Check sequence: O23344_ARATH/57-131 Checking feature equivalence. No annotations Check sequence: P74159_SYNY3/11-86 Checking feature equivalence. No annotations Check sequence: FER2_SYNP6/8-83 Checking feature equivalence. No annotations Check sequence: P73388_SYNY3/9-84 Checking feature equivalence. No annotations Check sequence: FER1_HALMA/35-108 Checking feature equivalence. No annotations Check sequence: P74449_SYNY3/11-88 Checking feature equivalence. No annotations Check sequence: FER2_NOSMU/10-85 Checking feature equivalence. No annotations Check sequence: FER2_APHSA/10-86 Checking feature equivalence. No annotations Check sequence: FER1_CYAPA/10-85 Checking feature equivalence. No annotations Check sequence: FER_PORPU/10-85 Checking feature equivalence. No annotations Check sequence: FER_ODOSI/10-85 Checking feature equivalence. No annotations Check sequence: FER_BUMFI/9-84 Checking feature equivalence. No annotations Check sequence: FER3_CYACA/9-84 Checking feature equivalence. No annotations Check sequence: FER2_CYACA/8-83 Checking feature equivalence. No annotations Check sequence: FER_BRYMA/8-83 Checking feature equivalence. No annotations Check sequence: FER_APHSA/9-83 Checking feature equivalence. No annotations Check sequence: FER_THEVL/9-84 Checking feature equivalence. No annotations Check sequence: FER_PERBI/6-80 Checking feature equivalence. No annotations Check sequence: FER3_RAPSA/8-82 Checking feature equivalence. No annotations Check sequence: FER1_SPIOL/58-132 Checking feature equivalence. No annotations Check sequence: FER_SILPR/57-131 Checking feature equivalence. No annotations Check sequence: FER_WHEAT/54-128 Checking feature equivalence. No annotations Check sequence: FER_SAMNI/8-82 Checking feature equivalence. No annotations Check sequence: FERA_ALOMA/8-82 Checking feature equivalence. No annotations Check sequence: FER_ARCLA/8-82 Checking feature equivalence. No annotations Check sequence: FER_DATST/8-82 Checking feature equivalence. No annotations Check sequence: FER_PALPL/9-83 Checking feature equivalence. No annotations Check sequence: FER_EUGVI/8-82 Checking feature equivalence. No annotations Check sequence: FER_CHLFU/6-80 Checking feature equivalence. No annotations Check sequence: FER_SYNY4/9-83 Checking feature equivalence. No annotations Check sequence: FER1_PHYAM/8-82 Checking feature equivalence. No annotations Check sequence: FER2_PHYAM/9-83 Checking feature equivalence. No annotations Check sequence: FER2_SPIOL/8-82 Checking feature equivalence. No annotations Check sequence: FER_PHYPA/57-132 Checking feature equivalence. No annotations Check sequence: FER_MARPO/7-81 Checking feature equivalence. No annotations Reading file: examples/RF00031_folded.stk File format identified as Stockholm Output file in 'Stockholm': # STOCKHOLM 1.0 #=GF WK http://en.wikipedia.org/wiki/SECIS_element #=GF NC 0.0 #=GF RT A survey of metazoan selenocysteine insertion sequences. #=GF TC 22.6 #=GF RN [2] #=GF RM 12458087 #=GF RL Biochimie 2002;84:953-959. #=GF AU Griffiths-Jones SR #=GF CC to act as a computational screen for selenoprotein genes [2]. #=GF DR GO:0001514 GO:selenocysteine incorporation #=GF ID SECIS_1 #=GF SS Published; PMID:12458087 #=GF RA Lambert A, Lescure A, Gautheret D; #=GF SQ 61 #=GF PI SECIS #=GF DE Selenocysteine insertion sequence 1 #=GF AC RF00031 #=GF SE Gautheret D, PMID:12458087 #=GF GA 20.0 #=GF BM cmsearch -Z 169604 -E 1000 --toponly CM SEQDB #=GF TP Cis-reg; #=GS M.musculus.13/1-60 AC AF333036 #=GS M.musculus.2/1-64 AC AF021345 #=GS D.melanogaster.3/1-68 AC AY060611 #=GS D.melanogaster.1/1-65 AC AY119185 #=GS H.sapiens.15/1-63 AC X13710 #=GS R.norvegicus.4/1-61 AC AF072865 #=GS M.musculus.4/1-65 AC AF096875 #=GS H.sapiens.6/1-66 AC AF093774 #=GS M.musculus.8/1-67 AC AF288740 #=GS H.sapiens.8/1-67 AC AL833145 #=GS M.musculus.6/1-61 AC AF136399 #=GS G.gallus.1/1-63 AC AF125575 #=GS S.mansoni.1/1-67 AC L37762 #=GS H.sapiens.7/1-70 AC X58295 #=GS S.scrofa.1/1-68 AC AF380118 #=GS B.taurus.1/1-64 AC D88033 #=GS B.taurus.3/1-66 AC AB017534 #=GS M.musculus.10/1-66 AC AB030643 #=GS O.niloticus.3/1-65 AC Y11111 #=GS H.sapiens.12/1-67 AC U43286 #=GS M.musculus.12/1-65 AC AC002327 #=GS S.scrofa.3/1-63 AC AF532927 #=GS R.norvegicus.3/1-67 AC AF390544 #=GS M.musculus.14/1-67 AC U43285 #=GS B.taurus.5/1-61 AC AB022283 #=GS H.sapiens.10/1-62 AC X71973 #=GS H.sapiens.3/1-68 AC U67171 #=GS R.norvegicus.1/1-61 AC X57999 #=GS B.taurus.7/1-61 AC X13684 #=GS H.sapiens.1/1-63 AC AF201385 #=GS M.musculus.1/1-64 AC AF195142 #=GS H.sapiens.14/1-62 AC S79854 #=GS M.musculus.3/1-64 AC X03920 #=GS R.norvegicus.7/1-66 AC L24896 #=GS M.musculus.5/1-66 AC AF241527 #=GS R.norvegicus.5/1-62 AC X12367 #=GS D.melanogaster.2/1-63 AC AC092237 #=GS C.elegans.1/1-64 AC U61947 #=GS M.musculus.7/1-64 AC X84742 #=GS M.musculus.9/1-66 AC AF274027 #=GS O.niloticus.1/1-59 AC Y11109 #=GS G.gallus.2/1-60 AC Y11110 #=GS D.rerio.1/1-66 AC AF322071 #=GS H.sapiens.4/1-71 AC AF195141 #=GS H.sapiens.5/1-57 AC X53463 #=GS G.gallus.3/1-73 AC Y11273 #=GS B.taurus.2/1-64 AC D25220 #=GS S.scrofa.2/1-65 AC L12743 #=GS B.taurus.6/1-67 AC AF053984 #=GS B.taurus.4/1-64 AC AB032826 #=GS H.sapiens.9/1-58 AC S48220 #=GS X.laevis.1/1-67 AC L28111 #=GS O.niloticus.2/1-61 AC Y11109 #=GS M.musculus.11/1-63 AC AL645723 #=GS S.scrofa.4/1-64 AC X76008 #=GS O.aries.1/1-68 AC U67853 #=GS H.sapiens.11/1-63 AC AF166127 #=GS R.norvegicus.2/1-64 AC M63574 #=GS H.sapiens.13/1-64 AC BC003127 #=GS H.sapiens.2/1-65 AC AL049837 #=GS R.norvegicus.6/1-67 AC U25264 #=GR D.melanogaster.1/1-65 SS ................(((((((((((......((((......)))..)........)))))).).).)))...................... D.melanogaster.1/1-65 G.AGCC.CU...AUGAUCGAUGAUUGG.CAAA.UCCUCUC..GAGG..A.......ACCGAUC.G.U.UGAGAA..CCCCU.....UUGCCUU #=GR D.melanogaster.2/1-63 SS ................(((((((((((......((((......)))..)........)))))).).).)))...................... D.melanogaster.2/1-63 C.AUUCAACU.UAUGAGGAUUAUUUCU.UAAA.GGCCUCU...GGC..U.......CGGAAAU.A.G.UCUGAA...CCU........UAUUG #=GR D.melanogaster.3/1-68 SS (.(((...(....((((((((((((((......((((......))).).........)))))).).).)).).)...)).....)....)))) D.melanogaster.3/1-68 G.UGGCGCU..UAUGACGCAGUUGUCU.UAAA.CUCGAAC..UCGA.GC........GGGCAA.U.U.GCUGAU...UACG...AUUAACCAC #=GR O.niloticus.1/1-59 SS ......(((...(((..(((((.((..........)).)....)))...........)((((.......))))....)))).......))... O.niloticus.1/1-59 G.UUUCUCA...GUGAAGGCUACAGAU.UAAA..CCUCU....GGC...........CUCUGG.A.G.CCAGAU..GCAUU.......GAAAC #=GR O.niloticus.2/1-61 SS ..((((.....((((..(((((.((..........)).)....)))...........)((((.......))))....)))).......)))). O.niloticus.2/1-61 U.GUUUAUU..AAUGACGGCUACAGAU.UAAA..CCUUU....AGC...........CUCUGG.A.G.CCAGAU..GCAUU......CAAACA #=GR O.niloticus.3/1-65 SS (.((((..........(((((((((((.(......((.......))..........))))))).).).))).................))))) O.niloticus.3/1-65 G.UGUCUCU...GUGAAGUUCGGUUUU.UAAA.AGGGUCA...UCC..A.......GAAAACC.G.ACACUGAU..GUUUC......CGACAC #=GR D.rerio.1/1-66 SS ...((((((.......(((((((..(.....(.(((........)).)).........)..)).).).))).........).......))))) D.rerio.1/1-66 A.UGUGGUCUUUAUGAAGGCAGGUGCA.GAAA.CUAUGCA...CUA.GU........GGUGUC.U.G.UCUGAU..GUUUG.......GCCAU #=GR X.laevis.1/1-67 SS .................((((((.(((......(((((....))))..)........))).)).).).))....................... X.laevis.1/1-67 G.UGUUUGCA.AAUGACGACCGAUUUU.GAAA.UGGUCUCACGGCC..A.......AAAACUC.GUG.UCCGAC...AUC........AACCC #=GR G.gallus.1/1-63 SS (.((.(..(...((...((((((((((......((((......)))..)........)))))).).).))..))..)...........).))) G.gallus.1/1-63 G.UGUGUUU...AUGAAGAGCACUAAC.AAAA.GAGUAAU.UGACU..C.......AGUUGGU.G.U.UCAGAU..GCU.........CUCAC #=GR G.gallus.2/1-60 SS ................((((((((((................................))))).).)..)))..................... G.gallus.2/1-60 U.AUUUGUC...AUGACAGUCACAGCA.UAAA..GCGCA....GAC...........GGCUGU.G.A.CCUGAU..UUUAG......AAAAUA #=GR G.gallus.3/1-73 SS ......(((...(..((((((((((((......((((((..........))).))).)))))).).).)).......)).......).))).. G.gallus.3/1-73 U.AUUUCUU..UGUGAUGACCGAUUUU.GAAA.UGGGUUU...CUC..UAAUGCCAGGAAAUC.GUG.UCUGAU...GUUG.....UCAAGUA #=GR M.musculus.1/1-64 SS (.((((.(....((.(((.((((((((..............................)))))).).).))).)).....)........))))) M.musculus.1/1-64 G.UCACCGA...AUGAUCUGCUCUGGU.CAAA.UCCUUCU...AUG..C......CAGCCAGG.G.U.GGUGAU..GACCC.......GUGAC #=GR M.musculus.2/1-64 SS (.(((((..........(((((((((........(((......)))............))))).).).))..........).......))))) M.musculus.2/1-64 G.UUACAUU..AAUGAGAACAGAAACA.UAAA..CUAUGA.CCUAG.G.........GGUUUC.U.G.UUGGAU..AGCUU.......GUAAU #=GR M.musculus.3/1-64 SS (.(((.(((..(..((.((((((((.(((................)...........)))))).).).))......))..).....))))))) M.musculus.3/1-64 G.GUUCUUC..CAUGAUGGUGUUUCCUCUAAA..UUUGC....ACG...........GAGAAA.C.A.CCUGAU.UUCCAG.....GAAAAUC #=GR M.musculus.4/1-65 SS (.(((((.........(((((((.(((......((((......)))..)........))).)).).).))).........).......))))) M.musculus.4/1-65 G.UGUGCGA...AUGAUAACUACUGAC.GAAA.GAGCUGU.CUGCU..C.......AGUCUGU.G.G.UUGGAU...GUAG......UCACAC #=GR M.musculus.5/1-66 SS (.((((..(...((...((((((((((.(.....(((......)))..........))))))).).).))..))..)...........))))) M.musculus.5/1-66 G.CCGCUUC...AUGACAGGAAGGACU.GAAA.UGUCUUA...GAC..C.....UGUGGUCUU.U.C.CUCGAU..GUUCC......UGCGGC #=GR M.musculus.6/1-61 SS (.((((...........(((((((((..(.....(((......)))..).........))))).).).))..................))))) M.musculus.6/1-61 G.UCAGAUG...AUGAUGGCCUGGGCA.GAAA.CCCCAUG..UGGG..C........CGCCCA.G.G.UUUGAA...CCC........CUGGC #=GR M.musculus.7/1-64 SS ................(((.(((((((....(.(((.......)))..)........)))))).)...)))..(...(((........).))) M.musculus.7/1-64 G.UGUCUCU...AUGAAGGAGGGGCCC.GAAG.CCCUUGU...GGG..C........GGGCCU.C.C.CCUGAG...CCCG....UCUGUGGU #=GR M.musculus.8/1-67 SS ..((((......((.(((.((((((((......((((......))).).........)))))).))..))).))..............)))). M.musculus.8/1-67 U.UUGCAUU..AAUGAGGAUUACACAG.AAAA.CCUUUGU..UAAG.GA.......CUUGUGU.AGA.UCUGAU..AAUUG.......GCAAA #=GR M.musculus.9/1-66 SS (.(((..((..((....((.((((((.....(.((((......))).)).........))))).)...))))))...)).).......).... M.musculus.9/1-66 C.CGGCACU..CAUGAAGGUCUGCUUG.AAAA.CCAGCCU..GCUG.GU........GGGGCA.G.U.CCUGAG.GACCUG.......GCGUG #=GR M.musculus.10/1-66 SS (.(((..((..((....((.((((((.....(.((((......))).)).........))))).)...))))))...)).).......).... M.musculus.10/1-66 C.CGGCACU..CAUGAAGGUCUGCCUG.AAAA.CCAGCCU..GCUG.GU........GGGGCA.G.U.CCUGAG.GACCUG.......GCGUG #=GR M.musculus.11/1-63 SS (.((((...........((((((((((.(...............))...........).)))).).).))................))))).. M.musculus.11/1-63 U.AUUUGUG..UAUGAUGGUCACAGUG.UAAA..GUUCC....CAC...........AGCUGU.G.A.CUUGAU..UUUUA....AAAAUGUC #=GR M.musculus.12/1-65 SS (.(((((..........((((((((((......((....)..)..............)))))).).).))..........).......))))) M.musculus.12/1-65 C.UCAGCAG..GAUGAUGAGAAGGGCU.GAAA.UGCUGCC..AAAC..C.......AGGUCCU.U.U.UCUGAU..GGUGG.......CUGGG #=GR M.musculus.13/1-60 SS (.(((......))))..(((((((.((......(((.........).))........)).))).).).))....................... M.musculus.13/1-60 C.AUGCGUC..CAUGAAGUCACUGGCC.UCAA.GCCCAA....GUG.GU........GGGCAG.U.G.ACAGAA...GA.........GCUGC #=GR M.musculus.14/1-67 SS (.(((((.........(((.((..(((.(.....(((((((....)..)........)))))).).).)..)))))....).......))))) M.musculus.14/1-67 C.UCUGAUA...AUGAUGUCUCUCCCU.CUAA.CUCCCAGUAAGGA..C........UGGGAG.A.G.GCUGAACAAACCU.......CAGAG #=GR R.norvegicus.1/1-61 SS ....((((.........((((((((((.(...............))...........).)))).).).)).........)).......))... R.norvegicus.1/1-61 A.UAUUUGUU.UAUGAUGGUCACAGUG.UAAA..GUUCA....CAC...........AGCUGU.G.A.CUUGAU..UUUUA.......AAAAU #=GR R.norvegicus.2/1-64 SS ............((((((((((((((........(((......)))............))))).).).))........))).......))... R.norvegicus.2/1-64 G.UUACAUU..GAUGAGAACAGAAACA.UAAA..CUAUGA.CCUAG.G.........GGUUUC.U.G.UUGGAU..AGCUC.......GUAAU #=GR R.norvegicus.3/1-67 SS ..((((..........(((((((((((.(....((((......)))).)........)))))).).).))).................)))). R.norvegicus.3/1-67 U.UUGCAUU..AAUGAGGAUUACACAG.AAAA.CCUUUGU..UAAGGGU........UUGUGUCG.A.UCUGCU..AAUUG.......GCAAA #=GR R.norvegicus.4/1-61 SS (.(((........)))).(((..((...(.......)..).)..))..).........((.((.(.(............)........))))) R.norvegicus.4/1-61 G.UCAGAUG...AUGACGGCCUGUGCA.GAAA.CCCCCAC.GUGGG..C........UGC.CA.G.G.UUUGAA...CCC........CUGGC #=GR R.norvegicus.5/1-62 SS (.((((((......(((((((((((.((((..............))...........)))))).).).)).).).)....)......)))))) R.norvegicus.5/1-62 G.UUUUUCC...AUGACGGUGUUUCCUCUAAA..UUUAC....AUG...........GAGAAA.C.A.CCUGAU.UUCCAG......AAAAAU #=GR R.norvegicus.6/1-67 SS (.((((..(...((((..(((((((((.(.....(((......)))..........))))))).).).))).))..)...........))))) R.norvegicus.6/1-67 G.CCGCUUC...AUGACAGGAAGGACU.GAAA.UGUCUCA.AAGAC..C.....UGUGGUCUU.U.C.UUCGAU..GUUCU.......GCGGC #=GR R.norvegicus.7/1-66 SS (.(((..((..(.....((.((((((.....(.((((......))).)).........))))).)...)).)))...)).).......).... R.norvegicus.7/1-66 C.CGGCACU..CAUGACGGUCUGCCUG.AAAA.CCAGCCC..GCUG.GU........GGGGCA.G.U.CCCGAG.GACCUG.......GCGUG #=GR H.sapiens.1/1-63 SS (.((((...........(((.((((((......(((((....))))..)........))))))...).))..................))))) H.sapiens.1/1-63 G.CCAGAUG...AUGACGACCUGGGUG.GAAA.CCUACCC.UGUGG..G........CACCCA.U.G.UCCGAG...CCCC.......CUGGC #=GR H.sapiens.2/1-65 SS (.(((((.........(((((((((((......(((((....))))..)........)))))).).).))).........).......))))) H.sapiens.2/1-65 G.UGUGCGG...AUGAUAACUACUGAC.GAAA.GAGUCAU.CGACU..C.......AGUUAGU.G.G.UUGGAU...GUAG......UCACAU #=GR H.sapiens.3/1-68 SS ..(((...(...((.(..(((((((((.......(((......)))...........)))))).).).).).))..)..........)))... H.sapiens.3/1-68 G.ACGCUUC...AUGAUAGGAAGGACU.GAAA.AGUCUUG.UGGAC..A.....CCUGGUCUU.U.C.CCUGAU..GUUCU......CGUGGC #=GR H.sapiens.4/1-71 SS ...(((.((.....(((((((((((((....(.((((......)))..).......))))))).)...........)))))..).)).))).. H.sapiens.4/1-71 G.ACUGACAU.UAUGAAGGCCUGUACU.GAAG.ACAGCAA..GCUG..U.......UAGUACA.G.A.CCAGAU..GCUUU..CUUGGCAGGC #=GR H.sapiens.5/1-57 SS ..((((...........((((((...........((((...................)))))).).).))..................)))). H.sapiens.5/1-57 U.UCACAGA...AUGAUGGCACCUUCC.UAA...ACCCU....CAU...........GGGUGG.U.G.UCUGAG..AGGC........GUGAA #=GR H.sapiens.6/1-66 SS (.(((((.........(((((((((((....((.(((......)))..).....)..)))))).).).))).........).......))))) H.sapiens.6/1-66 G.UGUGCGG...AUGAUAACUACUGAC.GAAAGAGUCAUC...GAC..C.....UCAGUUAGU.G.G.UUGGAU...GUAG......UCACAU #=GR H.sapiens.7/1-70 SS ..(((.((((.((...((((((((.........((((......)))..)...............).).)))......)))...))))))))). H.sapiens.7/1-70 U.GGCGUCUU.CAUGAGGGAGGGGCCC..AAA.GCCCUUG..UGGG..C........GGACCU.C.C.CCUGAG...CCUGUCUGAGGGGCCA #=GR H.sapiens.8/1-67 SS ..(((((..........(((((((((........(((......)))............))))).).).)).........)).....))).... H.sapiens.8/1-67 U.UUGCUUU..AAUGAGAAUAGAAACG.UAAA..CUAUGA.CCUAG.G.........GGUUUC.U.G.UUGGAU.AAUUAG.....CAGUUUA #=GR H.sapiens.9/1-58 SS .............(((.((.(((((((..............................)))))).)...)).......)))............. H.sapiens.9/1-58 U.AUUUGUU..UAUGAUGGCCACAGCC.UAAA..GUACA....CAC...........GGCUGU.G.A.CUUGAU...UCA........AAAGA #=GR H.sapiens.10/1-62 SS ...((((....(......)..))))............((....(((..(........(((........))))......))).......))... H.sapiens.10/1-62 C.CGGCACU..CAUGACGGCCUGCCUG.CAAA..CCUGC....UGG..U........GGGGCA.G.A.CCCGAA.AAUCCA.......GCGUG #=GR H.sapiens.11/1-63 SS (.((((...........(((.((((((......(((((....))))..)........))))))...).))..................))))) H.sapiens.11/1-63 G.CCGGAUG...AUGACGACCUGGGUG.GAAA.CCUACCC.UGUGG..G........CACCCA.U.G.UCCGAG...CCCC.......CUGGC #=GR H.sapiens.12/1-67 SS (.((((.......((..(((((((((.......((........)).............))))).).).))....))............))))) H.sapiens.12/1-67 C.UCUGUUA...AUGACGUCUCUCCCUCUAAA.CCCCAUU.AAGGA..C........UGGGAG.A.G.GCAGAGCAAGCCU.......CAGAG #=GR H.sapiens.13/1-64 SS (.((((.((.......(((((((((((......((.........))...........)))))).).).)))......)).........))))) H.sapiens.13/1-64 G.UCACUGC...AUGAUCCGCUCUGGU.CAAA.CCCUUCC...AGG..C......CAGCCAGA.G.U.GGGGAU..GGUCU.......GUGAC #=GR H.sapiens.14/1-62 SS ...((((.(...((...((((((.(((......((((......)))..)........))).)).).).))...)...)).).......))).. H.sapiens.14/1-62 C.ACUGCUG...AUGACGAACUAUCUC.UAAC.UGGUCUU..GACC..A.......CGAGCUA.G.U.UCUGAA...UU.G.......CAGGG #=GR H.sapiens.15/1-63 SS .......((..(.((((((((((.(((((................)...........)))))).).).)).......))))......)))... H.sapiens.15/1-63 U.UUUCAUC..UAUGAGGGUGUUUCCUCUAAA..CCUACG...AGG...........GAGGAA.C.A.CCUGAU...CUUA.....CAGAAAA #=GR B.taurus.1/1-64 SS ......(((..(((.(.(((((((((........(((......)))............))))).).).))...)...)))).......))... B.taurus.1/1-64 C.UUGCGUU..AAUGAGAACAGAAACG.UAAA..CUAUAA.CCUAG.G.........GGUUUC.U.G.UUGGAU..GGUUG.......GCAAC #=GR B.taurus.2/1-64 SS ......(((..(((.(.(((((((((........(((......)))............))))).).).))...)...)))).......))... B.taurus.2/1-64 C.UUGCGUU..AAUGAGAACAGAAACG.AAAA..CUAUAA.CCUAG.G.........GGUUUC.U.G.UUGGAU..GGUUG.......GCAAC #=GR B.taurus.3/1-66 SS (.(.(((..(.(.....(((((((((.....(.((((......))).)).........))))).).).))..))..))).).......).... B.taurus.3/1-66 C.CCGGUGCC.UAUGACGGUCUGUCUG.AAAA.CCAGCCC...CUG.GU........GGGGCA.G.A.CCUGAG.AACCUG.......GCGUG #=GR B.taurus.4/1-64 SS ......(((..(((.(.(((((((((........(((......)))............))))).).).))...)...)))).......))... B.taurus.4/1-64 ACUUGCGUU..AAUGAGAACAGAAACG.UAAA..CUAUAA.CCUAG.G.........GGUUUC.U.G.UUGGAU..GGUUG.......GCAA. #=GR B.taurus.5/1-61 SS (.((((((....(((.((.((((((.(.(.......))))..)))).............)))).).).)))).)...)............... B.taurus.5/1-61 G.CCAGAUG...AUGAGGACCUGUGCG.GAAA.CCCCCCG..CGGG..C........UGCCCA.U.G.UCUGAG...CCC........CUGGC #=GR B.taurus.6/1-67 SS (.(((..((..((.....((((((.((.(((.............)).).........)).))).).).)))))...))))............. B.taurus.6/1-67 G.AUGCGUC..CAUGAAGUCACCAGCC.CCAA.GCCCCUC...GUG.GU........GGGUGG.U.G.AUGGAA.CCGUCA.....AAGCAGU #=GR B.taurus.7/1-61 SS (.((((..(...((..(((((((((.((((..............))...........)))))).).).))).)).)..))).......))... B.taurus.7/1-61 U.UUUGCCC...AUGAAGGUGUUCCCUCUAAA..CCUAC....GUG...........GAGGAA.U.G.CCUGAU.GUCCAG.......GAAAA #=GR O.aries.1/1-68 SS (.(.((.((...(....((((((((((.(....((((......))).)........))))))).).).)))))...))..)......)..... O.aries.1/1-68 G.ACGCUUC...AUGACAGGAAGGACU.GAAA.UGUCUCU.UGGAC.GC......CUGGUCCU.U.C.CUUGAU..GUUCU......CACGGC #=GR S.scrofa.1/1-68 SS .......((...(((((((((((((((.(....((((......))).)........))))))).)...))))........)......))))). S.scrofa.1/1-68 G.ACGCUUC...AUGACAGGAAGGACU.GAAA.UGUCUUG.UGGAC.GC......CUGGUCCU.U.C.CCUGAU..GUUCU......CAUGGC #=GR S.scrofa.2/1-65 SS .....((((..((.(.((((((((((.....(.((((......))).)).........))))).).).)).).....).)).......).))) S.scrofa.2/1-65 C.UGGCACC..CAUGACAGUCUGCCUA.AAAA.CCAGCCC...CUG.GU........GGGGCA.G.A.CUCGAG.AACCUG.......GCGUG #=GR S.scrofa.3/1-63 SS ...........(((....))).((((((((..............))...........)))))).....((((......)))......)..... S.scrofa.3/1-63 A.UUUUAUC..CAUGAAAGUGUUUCCUCUAAA..CCUAU....GUG...........GAGGAA.C.A.CCUGAU.GUCCAG......GAAAAU #=GR S.scrofa.4/1-64 SS .....((((..((.(.((((((((((.....(.(((........)).)).........))))).).).)).).....).)).......).))) S.scrofa.4/1-64 C.UGGCACC..CAUGACAGUCUGCCUA.AAAA.CCAGCC....CUG.GU........GGGGCA.G.A.CUCGAG.AACCUG.......GCGUG #=GR C.elegans.1/1-64 SS (.((((.((...((.(.((((...(((......(((........)).).........)))....).).))).))...)).........))))) C.elegans.1/1-64 G.AGGCAGCUUUGUGACGACCUUUGGC.UAAA.CUCCAUC..GUGA.GC........GCCUCU.G.G.UCUGAU...GC.........GCCUC #=GR S.mansoni.1/1-67 SS ...(((.((...(.(((((((((((((..............................)))))).).).)).............))).)))))) S.mansoni.1/1-67 C.UCGCUAU...AUGACGAUGGCAAUC.UCAA..AUGUU....CAU..U........GGUUGC.C.A.UUUGAU..GAAAUCAGUUUUGUGUG #=GC SS_cons <-<<<<-----------<<<<<<<<<<-------<<<......>>>----------->>>>>>->->->>------------------>>>>> #=GC RF_cons g.ucucauu..uAUGAuGgccucuccc.uAAA.ucccuuu...ggg..c........gggaga.g.g.cCuGAU..gcuug.......gagac // <<EOF File format identified as Stockholm Check sequence: D.melanogaster.1/1-65 Checking feature equivalence. Check sequence: D.melanogaster.2/1-63 Checking feature equivalence. Check sequence: D.melanogaster.3/1-68 Checking feature equivalence. Check sequence: O.niloticus.1/1-59 Checking feature equivalence. Check sequence: O.niloticus.2/1-61 Checking feature equivalence. Check sequence: O.niloticus.3/1-65 Checking feature equivalence. Check sequence: D.rerio.1/1-66 Checking feature equivalence. Check sequence: X.laevis.1/1-67 Checking feature equivalence. Check sequence: G.gallus.1/1-63 Checking feature equivalence. Check sequence: G.gallus.2/1-60 Checking feature equivalence. Check sequence: G.gallus.3/1-73 Checking feature equivalence. Check sequence: M.musculus.1/1-64 Checking feature equivalence. Check sequence: M.musculus.2/1-64 Checking feature equivalence. Check sequence: M.musculus.3/1-64 Checking feature equivalence. Check sequence: M.musculus.4/1-65 Checking feature equivalence. Check sequence: M.musculus.5/1-66 Checking feature equivalence. Check sequence: M.musculus.6/1-61 Checking feature equivalence. Check sequence: M.musculus.7/1-64 Checking feature equivalence. Check sequence: M.musculus.8/1-67 Checking feature equivalence. Check sequence: M.musculus.9/1-66 Checking feature equivalence. Check sequence: M.musculus.10/1-66 Checking feature equivalence. Check sequence: M.musculus.11/1-63 Checking feature equivalence. Check sequence: M.musculus.12/1-65 Checking feature equivalence. Check sequence: M.musculus.13/1-60 Checking feature equivalence. Check sequence: M.musculus.14/1-67 Checking feature equivalence. Check sequence: R.norvegicus.1/1-61 Checking feature equivalence. Check sequence: R.norvegicus.2/1-64 Checking feature equivalence. Check sequence: R.norvegicus.3/1-67 Checking feature equivalence. Check sequence: R.norvegicus.4/1-61 Checking feature equivalence. Check sequence: R.norvegicus.5/1-62 Checking feature equivalence. Check sequence: R.norvegicus.6/1-67 Checking feature equivalence. Check sequence: R.norvegicus.7/1-66 Checking feature equivalence. Check sequence: H.sapiens.1/1-63 Checking feature equivalence. Check sequence: H.sapiens.2/1-65 Checking feature equivalence. Check sequence: H.sapiens.3/1-68 Checking feature equivalence. Check sequence: H.sapiens.4/1-71 Checking feature equivalence. Check sequence: H.sapiens.5/1-57 Checking feature equivalence. Check sequence: H.sapiens.6/1-66 Checking feature equivalence. Check sequence: H.sapiens.7/1-70 Checking feature equivalence. Check sequence: H.sapiens.8/1-67 Checking feature equivalence. Check sequence: H.sapiens.9/1-58 Checking feature equivalence. Check sequence: H.sapiens.10/1-62 Checking feature equivalence. Check sequence: H.sapiens.11/1-63 Checking feature equivalence. Check sequence: H.sapiens.12/1-67 Checking feature equivalence. Check sequence: H.sapiens.13/1-64 Checking feature equivalence. Check sequence: H.sapiens.14/1-62 Checking feature equivalence. Check sequence: H.sapiens.15/1-63 Checking feature equivalence. Check sequence: B.taurus.1/1-64 Checking feature equivalence. Check sequence: B.taurus.2/1-64 Checking feature equivalence. Check sequence: B.taurus.3/1-66 Checking feature equivalence. Check sequence: B.taurus.4/1-64 Checking feature equivalence. Check sequence: B.taurus.5/1-61 Checking feature equivalence. Check sequence: B.taurus.6/1-67 Checking feature equivalence. Check sequence: B.taurus.7/1-61 Checking feature equivalence. Check sequence: O.aries.1/1-68 Checking feature equivalence. Check sequence: S.scrofa.1/1-68 Checking feature equivalence. Check sequence: S.scrofa.2/1-65 Checking feature equivalence. Check sequence: S.scrofa.3/1-63 Checking feature equivalence. Check sequence: S.scrofa.4/1-64 Checking feature equivalence. Check sequence: C.elegans.1/1-64 Checking feature equivalence. Check sequence: S.mansoni.1/1-67 Checking feature equivalence. Check sequence: Dm/1-25
Feb 28, 2025 2:55:11 PM compbio.ws.client.Jws2Client connect INFO: Connected successfully! Feb 28, 2025 2:55:11 PM compbio.ws.client.Jws2Client connect INFO: Connected successfully! Feb 28, 2025 2:55:11 PM compbio.ws.client.Jws2Client connect INFO: Connected successfully! Warning : Unknown Stockholm annotation type code seq Feb 28, 2025 2:55:11 PM compbio.ws.client.Jws2Client connect INFO: Connected successfully! Warning : Unknown Stockholm annotation type code seq INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 Warning : Unknown Stockholm annotation type code seq INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4