Class jalview.io.FeaturesFileTest
|
100%
successful |
| Test | Duration | Result |
|---|---|---|
| readGff3File | 0.010s | passed |
| simpleGff3FileClass | 0.001s | passed |
| simpleGff3FileLoader | 0.012s | passed |
| simpleGff3RelaxedIdMatching | 0.001s | passed |
| testOutputFeatureFilters | 0.001s | passed |
| testParse | 0.025s | passed |
| testParseFilters | 0.001s | passed |
| testParse_jalviewFeaturesOnly | 0.011s | passed |
| testParse_mixedJalviewGff | 0.011s | passed |
| testParse_pureGff3 | 0.012s | passed |
| testPrintGffFormat | 0.012s | passed |
| testPrintGffFormat_withFilters | 0.012s | passed |
| testPrintJalviewFormat | 0.012s | passed |
| testPrintJalviewFormat_withFilters | 0.011s | passed |
File format identified as Features Reading file: examples/uniref50.fa File format identified as Fasta Reading file: examples/uniref50.fa File format identified as Fasta Reading file: examples/uniref50.fa File format identified as Fasta Reading file: examples/uniref50.fa File format identified as Fasta Reading file: examples/uniref50.fa File format identified as Fasta Reading file: examples/uniref50.fa File format identified as Fasta Reading file: examples/uniref50.fa File format identified as Fasta Reading file: examples/uniref50.fa File format identified as Fasta
Ignoring unknown pragma: ##source-version exonerate:protein2genome:local 2.2.0 Ignoring unknown pragma: ##date 2015-01-16 Ignoring unknown pragma: ##type DNA ERROR - SO term cds invalid Ignoring unknown pragma: ##source-version exonerate:protein2genome:local 2.2.0 Ignoring unknown pragma: ##date 2015-01-16 Ignoring unknown pragma: ##type DNA Ignoring unknown pragma: ##source-version exonerate:protein2genome:local 2.2.0 Ignoring unknown pragma: ##date 2015-01-16 Ignoring unknown pragma: ##type DNA Ignoring unknown pragma: ##source-version exonerate:protein2genome:local 2.2.0 Ignoring unknown pragma: ##date 2015-01-16 Ignoring unknown pragma: ##type DNA INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka ERROR - SO term METAL invalid ERROR - SO term Pfam invalid INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher INFO - Building web services menu for jpred4 INFO - Rebuiling WS menu INFO - Building web service menu for slivka INFO - Building web services menu for jobs dispatcher