Class jalview.bin.CommandLineOperations

all > jalview.bin > CommandLineOperations
28

tests
0

failures
0

ignored
39.733s

duration
100%

successful
Test Duration Result
reportCurrentWorkingDirectory 0.001s passed
testAllInputOperations[0](CMD [-color zappo] executed successfully!, Failed command : -color zappo) 0s passed
testAllInputOperations[10](CMD [-noquestionnaire] executed successfully!, Failed command : -noquestionnaire) 0s passed
testAllInputOperations[1](CMD [-props test/jalview/bin/testProps.jvprops] executed successfully!, Failed command : -props File) 0s passed
testAllInputOperations[2](CMD [-sortbytree] executed successfully!, Failed command : -sortbytree) 0s passed
testAllInputOperations[3](CMD [-jabaws http://www.compbio.dundee.ac.uk/jabaws] executed successfully!, Failed command : -jabaws http://www.compbio.dundee.ac.uk/jabaws) 0s passed
testAllInputOperations[4](CMD [-open examples/uniref50.fa] executed successfully!, Failed command : -open examples/uniref50.fa) 0.001s passed
testAllInputOperations[5](CMD [-nosortbytree] executed successfully!, Failed command : -nosortbytree) 0s passed
testAllInputOperations[6](CMD [-features examples/testdata/plantfdx.features] executed successfully!, Failed command : -features examples/testdata/plantfdx.features) 0s passed
testAllInputOperations[7](CMD [-annotations examples/testdata/plantfdx.annotations] executed successfully!, Failed command : -annotations examples/testdata/plantfdx.annotations) 0s passed
testAllInputOperations[8](CMD [-tree examples/testdata/uniref50_test_tree] executed successfully!, Failed command : -tree examples/testdata/uniref50_test_tree) 0.001s passed
testAllInputOperations[9](CMD [-nousagestats] executed successfully!, Failed command : -nousagestats) 0s passed
testHeadlessModeOutputOperations[0](nodisplay -open examples/uniref50.fa, -eps, test/jalview/bin/test_uniref50_out.eps, true, 4096, 13000, null) 2.393s passed
testHeadlessModeOutputOperations[10](headless -open examples/uniref50.fa, -msf, test/jalview/bin/test_uniref50_out.msf, true, 2096, 13000, MSF) 2.426s passed
testHeadlessModeOutputOperations[11](headless -open examples/uniref50.fa, -pileup, test/jalview/bin/test_uniref50_out.aln, true, 2096, 13000, Pileup) 2.413s passed
testHeadlessModeOutputOperations[12](headless -open examples/uniref50.fa, -pir, test/jalview/bin/test_uniref50_out.pir, true, 2096, 13000, PIR) 2.382s passed
testHeadlessModeOutputOperations[13](headless -open examples/uniref50.fa, -pfam, test/jalview/bin/test_uniref50_out.pfam, true, 2096, 13000, Pfam) 2.403s passed
testHeadlessModeOutputOperations[14](headless -open examples/uniref50.fa, -blc, test/jalview/bin/test_uniref50_out.blc, true, 2096, 13000, BLC) 2.378s passed
testHeadlessModeOutputOperations[15](headless -open examples/uniref50.fa, -jalview, test/jalview/bin/test_uniref50_out.jvp, true, 2096, 13000, Jalview) 2.613s passed
testHeadlessModeOutputOperations[1](nodisplay -open examples/uniref50.fa, -eps, test/jalview/bin/test_uniref50_out.eps, false, 4096, 13000, null) 2.735s passed
testHeadlessModeOutputOperations[2](nogui -open examples/uniref50.fa, -eps, test/jalview/bin/test_uniref50_out.eps, true, 4096, 13000, null) 2.388s passed
testHeadlessModeOutputOperations[3](nogui -open examples/uniref50.fa, -eps, test/jalview/bin/test_uniref50_out.eps, false, 4096, 13000, null) 2.822s passed
testHeadlessModeOutputOperations[4](headless -open examples/uniref50.fa, -eps, test/jalview/bin/test_uniref50_out.eps, true, 4096, 13000, null) 2.405s passed
testHeadlessModeOutputOperations[5](headless -open examples/uniref50.fa, -svg, test/jalview/bin/test_uniref50_out.svg, false, 4096, 13000, null) 2.800s passed
testHeadlessModeOutputOperations[6](headless -open examples/uniref50.fa, -png, test/jalview/bin/test_uniref50_out.png, true, 4096, 13000, null) 2.383s passed
testHeadlessModeOutputOperations[7](headless -open examples/uniref50.fa, -html, test/jalview/bin/test_uniref50_out.html, true, 4096, 13000, null) 2.410s passed
testHeadlessModeOutputOperations[8](headless -open examples/uniref50.fa, -fasta, test/jalview/bin/test_uniref50_out.mfa, true, 2096, 13000, Fasta) 2.403s passed
testHeadlessModeOutputOperations[9](headless -open examples/uniref50.fa, -clustal, test/jalview/bin/test_uniref50_out.aln, true, 2096, 13000, Clustal) 2.376s passed 
Test CWD is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB665-JOB1
File format identified as Fasta
File format identified as Clustal
File format identified as MSF
File format identified as Pileup
File format identified as PIR
File format identified as Pfam
File format identified as BLC
File format identified as Jalview