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Coverage Report

Test simpleGff3FileClass

Test
simpleGff3FileClass 1PASS 28 Nov 18:09:10 0.001
 
simpleGff3FileClass
jalview.io.gff.Gff2Helper   jalview.io.gff.Gff2Helper 1.0100%
jalview.datamodel.SequenceDummy   jalview.datamodel.SequenceDummy 1.0100%
jalview.io.gff.GffHelperFactory   jalview.io.gff.GffHelperFactory 0.7575%
jalview.ws.SequenceFetcher   jalview.ws.SequenceFetcher 0.678571467.9%
jalview.io.gff.ExonerateHelper   jalview.io.gff.ExonerateHelper 0.6190476461.9%
jalview.io.gff.SequenceOntologyFactory   jalview.io.gff.SequenceOntologyFactory 0.550%
jalview.analysis.SequenceIdMatcher.SeqIdName   jalview.analysis.SequenceIdMatcher.SeqIdName 0.550%
jalview.io.gff.GffHelperBase   jalview.io.gff.GffHelperBase 0.4691943246.9%
jalview.datamodel.HiddenCursorPosition   jalview.datamodel.HiddenCursorPosition 0.4285714342.9%
jalview.datamodel.features.FeatureAttributes.AttributeData   jalview.datamodel.features.FeatureAttributes.AttributeData 0.4255319242.6%
jalview.ws.dbsources.EmblSource   jalview.ws.dbsources.EmblSource 0.440%
jalview.datamodel.MappingType   jalview.datamodel.MappingType 0.440%
jalview.analysis.SequenceIdMatcher   jalview.analysis.SequenceIdMatcher 0.3771929737.7%
jalview.io.FastaFile   jalview.io.FastaFile 0.3423423534.2%
jalview.ws.dbsources.EmblCdsSource   jalview.ws.dbsources.EmblCdsSource 0.285714328.6%
jalview.ext.so.SequenceOntology   jalview.ext.so.SequenceOntology 0.2687526.9%
jalview.io.AlignFile   jalview.io.AlignFile 0.2671232826.7%
jalview.datamodel.AlignedCodonFrame   jalview.datamodel.AlignedCodonFrame 0.2559726825.6%
jalview.datamodel.ResidueCount   jalview.datamodel.ResidueCount 0.2472727324.7%
jalview.datamodel.features.FeatureAttributes   jalview.datamodel.features.FeatureAttributes 0.2403100724%
jalview.io.FileParse   jalview.io.FileParse 0.2228412322.3%
jalview.datamodel.features.FeatureStore   jalview.datamodel.features.FeatureStore 0.2024169120.2%
jalview.io.gff.InterProScanHelper   jalview.io.gff.InterProScanHelper 0.220%
jalview.io.FeaturesFile   jalview.io.FeaturesFile 0.1913946619.1%
jalview.datamodel.features.SequenceFeatures   jalview.datamodel.features.SequenceFeatures 0.1847133818.5%
jalview.util.MapList   jalview.util.MapList 0.163551416.4%
jalview.datamodel.SequenceFeature   jalview.datamodel.SequenceFeature 0.1582733815.8%
jalview.datamodel.Profile   jalview.datamodel.Profile 0.12512.5%
jalview.datamodel.Sequence   jalview.datamodel.Sequence 0.1245674712.5%
jalview.util.StringUtils   jalview.util.StringUtils 0.10153846410.2%
jalview.ws.dbsources.Xfam   jalview.ws.dbsources.Xfam 0.086956528.7%
jalview.ext.ensembl.EnsemblSequenceFetcher   jalview.ext.ensembl.EnsemblSequenceFetcher 0.0833333368.3%
jalview.util.Comparison   jalview.util.Comparison 0.082677168.3%
jalview.datamodel.Alignment   jalview.datamodel.Alignment 0.0754189947.5%
jalview.gui.JvSwingUtils   jalview.gui.JvSwingUtils 0.074829937.5%
jalview.util.MessageManager   jalview.util.MessageManager 0.0714285757.1%
jalview.analysis.AlignmentUtils   jalview.analysis.AlignmentUtils 0.070906437.1%
jalview.analysis.AAFrequency   jalview.analysis.AAFrequency 0.0611814336.1%
jalview.ws.seqfetcher.ASequenceFetcher   jalview.ws.seqfetcher.ASequenceFetcher 0.0577777775.8%
jalview.ws.seqfetcher.DbSourceProxyImpl   jalview.ws.seqfetcher.DbSourceProxyImpl 0.0540540555.4%
jalview.ws.dbsources.Pdb   jalview.ws.dbsources.Pdb 0.042553194.3%
jalview.datamodel.Mapping   jalview.datamodel.Mapping 0.0346320353.5%
jalview.datamodel.HiddenSequences   jalview.datamodel.HiddenSequences 0.027397262.7%
jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping   jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping 0.0267857152.7%
jalview.util.MappingUtils   jalview.util.MappingUtils 0.0237068962.4%
jalview.util.DBRefUtils   jalview.util.DBRefUtils 0.0211480372.1%
jalview.datamodel.HiddenColumnsCursor   jalview.datamodel.HiddenColumnsCursor 0.0156251.6%
jalview.ws.dbsources.Uniprot   jalview.ws.dbsources.Uniprot 0.0155642021.6%
jalview.gui.AlignFrame   jalview.gui.AlignFrame 0.01289860251.3%
jalview.analysis.AlignSeq   jalview.analysis.AlignSeq 0.0128205131.3%
jalview.bin.Console   jalview.bin.Console 0.0098522171%
jalview.util.Platform   jalview.util.Platform 0.0094339620.9%
jalview.gui.SequenceFetcher   jalview.gui.SequenceFetcher 0.0089285720.9%
jalview.ext.ensembl.EnsemblGene   jalview.ext.ensembl.EnsemblGene 0.0081632650.8%
jalview.datamodel.HiddenColumns   jalview.datamodel.HiddenColumns 0.00235849060.2%