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jalview.io.DataSourceType
jalview.io.DataSourceType
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jalview.datamodel.ResidueCount.SymbolCounts
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1.0100%
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jalview.jbgui.GAlignmentPanel
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0.9494%
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jalview.io.JalviewFileChooser.RecentlyOpened
jalview.io.JalviewFileChooser.RecentlyOpened
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0.990%
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jalview.gui.SplashScreen.SplashImage
jalview.gui.SplashScreen.SplashImage
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0.8823529588.2%
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jalview.io.JalviewFileChooser.recentlyOpenedCellRenderer
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jalview.analysis.Conservation
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jalview.json.binding.biojs.BioJSReleasePojo
jalview.json.binding.biojs.BioJSReleasePojo
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jalview.gui.ItemsRenderer
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jalview.util.LinkedIdentityHashSet
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jalview.gui.FeatureRenderer
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jalview.ws.jws2.jabaws2.Jws2InstanceFactory
jalview.ws.jws2.jabaws2.Jws2InstanceFactory
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jalview.workers.ConsensusThread
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jalview.io.JalviewFileFilter
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0.694444469.4%
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jalview.json.binding.biojs.BioJSRepositoryPojo
jalview.json.binding.biojs.BioJSRepositoryPojo
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jalview.datamodel.Profile
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0.672131167.2%
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jalview.gui.JalviewDialog
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jalview.io.FastaFile
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0.550%
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0.550%
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jalview.schemes.NucleotideAmbiguityColourScheme
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jalview.schemes.PurinePyrimidineColourScheme
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
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0.550%
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jalview.schemes.OceanColourScheme
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0.550%
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jalview.ws.jws2.JabaWsServerQuery
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jalview.gui.SplashScreen
jalview.gui.SplashScreen
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jalview.io.BioJsHTMLOutput
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jalview.io.FileLoader
jalview.io.FileLoader
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jalview.gui.ColourMenuHelper
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jalview.ws.utils.UrlDownloadClient
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jalview.schemes.ResidueColourScheme
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jalview.util.ShortcutKeyMaskExWrapper11
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jalview.util.MessageManager
jalview.util.MessageManager
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0.440%
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0.440%
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0.440%
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0.440%
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0.440%
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jalview.io.AlignFile
jalview.io.AlignFile
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0.3972602839.7%
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
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0.388888938.9%
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org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
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0.3853503238.5%
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
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jalview.io.FileFormats
jalview.io.FileFormats
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0.3636%
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jalview.util.Comparison
jalview.util.Comparison
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0.350393735%
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
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0.3360655633.6%
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jalview.analysis.SeqsetUtils
jalview.analysis.SeqsetUtils
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0.321917832.2%
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jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
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0.30797130.8%
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jalview.datamodel.CigarArray
jalview.datamodel.CigarArray
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0.2959183829.6%
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org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
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0.2885747828.9%
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jalview.io.FileParse
jalview.io.FileParse
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0.286908128.7%
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jalview.datamodel.CigarBase
jalview.datamodel.CigarBase
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
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0.279365127.9%
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
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0.272532227.3%
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jalview.datamodel.SeqCigar
jalview.datamodel.SeqCigar
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0.2591463325.9%
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jalview.renderer.AnnotationRendererFactory
jalview.renderer.AnnotationRendererFactory
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0.2525%
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jalview.viewmodel.AlignmentViewport
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jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
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0.2272727322.7%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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0.2136678221.4%
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
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jalview.gui.BlogReader.LaunchJvBrowserOnItem
jalview.gui.BlogReader.LaunchJvBrowserOnItem
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
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jalview.io.FormatAdapter
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jalview.io.AppletFormatAdapter
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jalview.io.JalviewFileChooser
jalview.io.JalviewFileChooser
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0.1743869217.4%
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jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
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0.1739130517.4%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
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0.1674876816.7%
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
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jalview.util.Format
jalview.util.Format
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jalview.schemes.TCoffeeColourScheme
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jalview.log.JLogger
jalview.log.JLogger
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jalview.gui.Desktop.MyDesktopPane
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
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0.1408450814.1%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
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jalview.bin.Console
jalview.bin.Console
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0.1330049213.3%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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0.1326530613.3%
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jalview.io.FileFormat
jalview.io.FileFormat
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0.1240310112.4%
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jalview.datamodel.AlignmentView
jalview.datamodel.AlignmentView
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
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0.1176470611.8%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.1156462611.6%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
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0.1155462211.6%
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jalview.gui.Desktop.MyDesktopManager
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0.1111111111.1%
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jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
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0.1111111111.1%
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jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
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0.1111111111.1%
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jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
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0.10679611610.7%
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jalview.datamodel.AlignmentView.ScGroup
jalview.datamodel.AlignmentView.ScGroup
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0.1052631610.5%
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org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
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0.096774199.7%
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jalview.util.ColorUtils
jalview.util.ColorUtils
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0.096774199.7%
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
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0.09523819.5%
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jalview.util.JSONUtils
jalview.util.JSONUtils
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0.090909099.1%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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0.087811738.8%
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jalview.gui.Desktop
jalview.gui.Desktop
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0.087129848.7%
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jalview.datamodel.SequenceGroup
jalview.datamodel.SequenceGroup
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0.085674168.6%
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jalview.gui.Console
jalview.gui.Console
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0.082568818.3%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
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0.082191788.2%
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
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0.081300818.1%
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
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0.079207927.9%
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jalview.util.Platform
jalview.util.Platform
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0.0707547147.1%
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jalview.util.HttpUtils
jalview.util.HttpUtils
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0.070175447%
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jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
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0.070175447%
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
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0.069958857%
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jalview.gui.IdPanel
jalview.gui.IdPanel
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0.067264576.7%
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jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
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0.066666676.7%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
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0.0657894766.6%
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
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0.063524596.4%
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jalview.bin.Cache
jalview.bin.Cache
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0.061983476.2%
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
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0.061224496.1%
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
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0.059405945.9%
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
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0.054878055.5%
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
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0.052631585.3%
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
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0.0512820525.1%
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
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0.0496894425%
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jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
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0.0468754.7%
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jalview.gui.WsParamSetManager
jalview.gui.WsParamSetManager
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0.0429447854.3%
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org.json.simple.JSONObject
org.json.simple.JSONObject
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0.037735853.8%
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jalview.datamodel.ColumnSelection.IntList
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0.0373831763.7%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
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jalview.ws.jws1.JPredClient
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0.0310559013.1%
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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0.0270541092.7%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.0246153852.5%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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0.0241691842.4%
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
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0.0238095242.4%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
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0.0188679251.9%
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
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0.0169491531.7%
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jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
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jalview.datamodel.SearchResults
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0.0128205131.3%
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
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0.0125082291.3%
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
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0.0122699381.2%
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jalview.bin.Jalview
jalview.bin.Jalview
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0.0099277981%
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
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0.009132420.9%
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jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
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0.0082644620.8%
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org.json.simple.JSONArray
org.json.simple.JSONArray
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0.0080645160.8%
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
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0.007547170.8%
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jalview.gui.QuitHandler
jalview.gui.QuitHandler
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0.00722021660.7%
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
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0.00343642620.3%
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