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Coverage Report

Class AlignmentUtilsTests

 
AlignmentUtilsTests 4444 00 00 0.037
1.0100%
 
AlignmentUtilsTests.testAddMappedPositionsAlignmentUtilsTests.testAddMappedPositions 173192389015818 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testHaveCrossRefAlignmentUtilsTests.testHaveCrossRef 173192389020018 Nov 09:58:10 1PASS 0.0010.001  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 173192389021618 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testAddReferenceAnnotationsAlignmentUtilsTests.testAddReferenceAnnotations 173192389016118 Nov 09:58:10 1PASS 0.0020.002  
AlignmentUtilsTests.testExpandContextAlignmentUtilsTests.testExpandContext 173192389018318 Nov 09:58:10 1PASS 0.0120.012  
AlignmentUtilsTests.testExpandContext_annotationAlignmentUtilsTests.testExpandContext_annotation 173192389019518 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_prioritiseXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_prioritiseXrefs 173192389021118 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testAlignAsSameSequencesAlignmentUtilsTests.testAlignAsSameSequences 173192389016718 Nov 09:58:10 1PASS 0.0040.004  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_withUnmappedProteinAlignmentUtilsTests.testAlignSequenceAs_withMapping_withUnmappedProtein 173192389018218 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_mappedProteinProteinAlignmentUtilsTests.testAlignSequenceAs_mappedProteinProtein 173192389018018 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testAlignAs_alternateTranscriptsUngappedAlignmentUtilsTests.testAlignAs_alternateTranscriptsUngapped 173192389017318 Nov 09:58:10 1PASS 0.0020.002  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_withStartAndStopCodonsAlignmentUtilsTests.testMapProteinAlignmentToCdna_withStartAndStopCodons 173192389021218 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_withXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_withXrefs 173192389021318 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testMakeCdsAlignment_alternativeTranscriptsAlignmentUtilsTests.testMakeCdsAlignment_alternativeTranscripts 173192389020418 Nov 09:58:10 1PASS 0.0010.001  
AlignmentUtilsTests.testTransferFeatures_withOmitAlignmentUtilsTests.testTransferFeatures_withOmit 173192389021818 Nov 09:58:10 1PASS 0.0010.001  
AlignmentUtilsTests.testTransferFeaturesAlignmentUtilsTests.testTransferFeatures 173192389021818 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testTransferGeneLociAlignmentUtilsTests.testTransferGeneLoci 173192389022018 Nov 09:58:10 1PASS 0.0010.001  
AlignmentUtilsTests.testAddReferenceContactMapAlignmentUtilsTests.testAddReferenceContactMap 173192389016318 Nov 09:58:10 1PASS 0.0030.003  
AlignmentUtilsTests.testAlignSequenceAs_withTrailingPeptideAlignmentUtilsTests.testAlignSequenceAs_withTrailingPeptide 173192389018318 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testAlignAsSameSequencesMultipleSubSeqAlignmentUtilsTests.testAlignAsSameSequencesMultipleSubSeq 173192389017218 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testAlignProteinAsDnaAlignmentUtilsTests.testAlignProteinAsDna 173192389017518 Nov 09:58:10 1PASS 0.0020.002  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 173192389021418 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 173192389021518 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testMapCdsToProteinAlignmentUtilsTests.testMapCdsToProtein 173192389020818 Nov 09:58:10 1PASS 0.0010.001  
AlignmentUtilsTests.testShowOrHideSequenceAnnotationsAlignmentUtilsTests.testShowOrHideSequenceAnnotations 173192389021718 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testFindCdsForProteinAlignmentUtilsTests.testFindCdsForProtein 173192389019618 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testAlignProteinAsDna_incompleteStartCodonAlignmentUtilsTests.testAlignProteinAsDna_incompleteStartCodon 173192389017818 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testMakeCdsAlignmentAlignmentUtilsTests.testMakeCdsAlignment 173192389020218 Nov 09:58:10 1PASS 0.0020.002  
AlignmentUtilsTests.testTransferFeatures_withSelectAlignmentUtilsTests.testTransferFeatures_withSelect 173192389021918 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testHasCrossRefAlignmentUtilsTests.testHasCrossRef 173192389020018 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_keepIntronGapsOnlyAlignmentUtilsTests.testAlignSequenceAs_keepIntronGapsOnly 173192389017918 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testGetSequencesByNameAlignmentUtilsTests.testGetSequencesByName 173192389019918 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testMapCdnaToProtein_forSubsequenceAlignmentUtilsTests.testMapCdnaToProtein_forSubsequence 173192389020818 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testAddMappedPositions_withStopCodonAlignmentUtilsTests.testAddMappedPositions_withStopCodon 173192389016118 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testMakeCdsAlignment_filterProductsAlignmentUtilsTests.testMakeCdsAlignment_filterProducts 173192389020518 Nov 09:58:10 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_withIntronsAlignmentUtilsTests.testAlignSequenceAs_withMapping_withIntrons 173192389018118 Nov 09:58:10 1PASS 0.0010.001  
AlignmentUtilsTests.testFindCdsForProtein_noUTRAlignmentUtilsTests.testFindCdsForProtein_noUTR 173192389019718 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testFindCdsPositionsAlignmentUtilsTests.testFindCdsPositions 173192389019718 Nov 09:58:10 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_noIntronsAlignmentUtilsTests.testAlignSequenceAs_withMapping_noIntrons 173192389018018 Nov 09:58:10 1PASS 0.0010.001  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_noXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_noXrefs 173192389021018 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testMakeCdsAlignment_multipleProteinsAlignmentUtilsTests.testMakeCdsAlignment_multipleProteins 173192389020618 Nov 09:58:10 1PASS 0.0010.001  
AlignmentUtilsTests.testIsMappableAlignmentUtilsTests.testIsMappable 173192389020118 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testFindCdsPositions_fivePrimeIncompleteAlignmentUtilsTests.testFindCdsPositions_fivePrimeIncomplete 173192389019818 Nov 09:58:10 1PASS 0.00  
AlignmentUtilsTests.testTranslatesAsAlignmentUtilsTests.testTranslatesAs 173192389022218 Nov 09:58:10 1PASS 0.00