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Coverage Report

  1. Project Clover database Mon Nov 18 2024 09:38:20 GMT
  2. Package jalview.io
  3. Class JSONFileTest

Test testBioJSONRoundTripWithColourSchemeNone

Test
testBioJSONRoundTripWithColourSchemeNone 1PASS 18 Nov 09:39:41 0.057
 
testBioJSONRoundTripWithColourSchemeNone
jalview.gui.FeatureRenderer   jalview.gui.FeatureRenderer 1.0100%
jalview.json.binding.biojson.v1.AnnotationDisplaySettingPojo   jalview.json.binding.biojson.v1.AnnotationDisplaySettingPojo 1.0100%
jalview.ws.WSClient   jalview.ws.WSClient 1.0100%
jalview.datamodel.HiddenCursorPosition   jalview.datamodel.HiddenCursorPosition 1.0100%
jalview.datamodel.ResidueCount.SymbolCounts   jalview.datamodel.ResidueCount.SymbolCounts 1.0100%
jalview.json.binding.biojson.v1.SequenceGrpPojo   jalview.json.binding.biojson.v1.SequenceGrpPojo 0.9595%
jalview.jbgui.GAlignmentPanel   jalview.jbgui.GAlignmentPanel 0.9494%
jalview.json.binding.biojson.v1.SequenceFeaturesPojo   jalview.json.binding.biojson.v1.SequenceFeaturesPojo 0.930232693%
jalview.json.binding.biojson.v1.AnnotationPojo   jalview.json.binding.biojson.v1.AnnotationPojo 0.990%
jalview.datamodel.Profiles   jalview.datamodel.Profiles 0.866666786.7%
jalview.analysis.Conservation   jalview.analysis.Conservation 0.8663484586.6%
jalview.json.binding.biojson.v1.SequencePojo   jalview.json.binding.biojson.v1.SequencePojo 0.818181881.8%
jalview.json.binding.biojson.v1.AlignmentAnnotationPojo   jalview.json.binding.biojson.v1.AlignmentAnnotationPojo 0.812581.2%
jalview.io.JSONFile   jalview.io.JSONFile 0.7874186678.7%
jalview.util.LinkedIdentityHashSet   jalview.util.LinkedIdentityHashSet 0.7727272577.3%
jalview.workers.SecondaryStructureConsensusThread   jalview.workers.SecondaryStructureConsensusThread 0.735294173.5%
jalview.json.binding.biojson.v1.AlignmentPojo   jalview.json.binding.biojson.v1.AlignmentPojo 0.724137972.4%
jalview.util.LinkedIdentityHashSet.IdentityWrapper   jalview.util.LinkedIdentityHashSet.IdentityWrapper 0.7142857371.4%
jalview.workers.ConsensusThread   jalview.workers.ConsensusThread 0.696969769.7%
jalview.datamodel.Profile   jalview.datamodel.Profile 0.672131167.2%
jalview.jbgui.GAlignFrame   jalview.jbgui.GAlignFrame 0.5731370457.3%
jalview.workers.ConservationThread   jalview.workers.ConservationThread 0.5666666656.7%
jalview.datamodel.HiddenColumnsCursor   jalview.datamodel.HiddenColumnsCursor 0.562556.2%
jalview.viewmodel.seqfeatures.FeatureRendererSettings   jalview.viewmodel.seqfeatures.FeatureRendererSettings 0.5111111451.1%
jalview.viewmodel.ViewportProperties   jalview.viewmodel.ViewportProperties 0.550%
jalview.schemes.TaylorColourScheme   jalview.schemes.TaylorColourScheme 0.550%
jalview.schemes.FlowerColourScheme   jalview.schemes.FlowerColourScheme 0.550%
jalview.schemes.ZappoColourScheme   jalview.schemes.ZappoColourScheme 0.550%
jalview.schemes.NucleotideAmbiguityColourScheme   jalview.schemes.NucleotideAmbiguityColourScheme 0.550%
jalview.schemes.PurinePyrimidineColourScheme   jalview.schemes.PurinePyrimidineColourScheme 0.550%
jalview.schemes.NucleotideColourScheme   jalview.schemes.NucleotideColourScheme 0.550%
jalview.schemes.BlossomColourScheme   jalview.schemes.BlossomColourScheme 0.550%
jalview.schemes.SunsetColourScheme   jalview.schemes.SunsetColourScheme 0.550%
jalview.schemes.OceanColourScheme   jalview.schemes.OceanColourScheme 0.550%
jalview.ws.jws2.MsaWSClient   jalview.ws.jws2.MsaWSClient 0.4429530244.3%
jalview.gui.ColourMenuHelper   jalview.gui.ColourMenuHelper 0.4322033843.2%
org.json.simple.parser.Yylex   org.json.simple.parser.Yylex 0.4171974741.7%
jalview.util.ShortcutKeyMaskExWrapper11   jalview.util.ShortcutKeyMaskExWrapper11 0.4166666641.7%
jalview.analysis.AAFrequency   jalview.analysis.AAFrequency 0.4118852341.2%
jalview.schemes.HydrophobicColourScheme   jalview.schemes.HydrophobicColourScheme 0.440%
jalview.schemes.HelixColourScheme   jalview.schemes.HelixColourScheme 0.440%
jalview.schemes.TurnColourScheme   jalview.schemes.TurnColourScheme 0.440%
jalview.schemes.StrandColourScheme   jalview.schemes.StrandColourScheme 0.440%
jalview.schemes.BuriedColourScheme   jalview.schemes.BuriedColourScheme 0.440%
jalview.workers.AlignCalcManager   jalview.workers.AlignCalcManager 0.3928571339.3%
jalview.datamodel.AlignExportSettingsAdapter   jalview.datamodel.AlignExportSettingsAdapter 0.384615438.5%
jalview.datamodel.ResidueCount   jalview.datamodel.ResidueCount 0.3818181838.2%
jalview.io.AlignFile   jalview.io.AlignFile 0.3767123237.7%
jalview.util.MessageManager   jalview.util.MessageManager 0.3571428735.7%
jalview.schemes.ResidueColourScheme   jalview.schemes.ResidueColourScheme 0.3571428735.7%
jalview.util.Comparison   jalview.util.Comparison 0.3346456633.5%
org.json.simple.parser.JSONParser   org.json.simple.parser.JSONParser 0.3193069431.9%
jalview.viewmodel.styles.ViewStyle   jalview.viewmodel.styles.ViewStyle 0.315217431.5%
jalview.ws.rest.RestServiceDescription   jalview.ws.rest.RestServiceDescription 0.31531.5%
jalview.renderer.seqfeatures.FeatureColourFinder   jalview.renderer.seqfeatures.FeatureColourFinder 0.313725531.4%
jalview.io.FileParse   jalview.io.FileParse 0.2980501429.8%
jalview.ws.jws2.SequenceAnnotationWSClient   jalview.ws.jws2.SequenceAnnotationWSClient 0.2903225729%
jalview.schemes.JalviewColourScheme   jalview.schemes.JalviewColourScheme 0.285714328.6%
jalview.ws.jws2.JabaPreset   jalview.ws.jws2.JabaPreset 0.2727272827.3%
jalview.datamodel.features.FeatureStore   jalview.datamodel.features.FeatureStore 0.2628398826.3%
jalview.gui.JvSwingUtils   jalview.gui.JvSwingUtils 0.258503425.9%
jalview.ws.jws2.jabaws2.Jws2Instance   jalview.ws.jws2.jabaws2.Jws2Instance 0.2528735725.3%
org.json.JSONObject.Null   org.json.JSONObject.Null 0.2525%
jalview.gui.JalviewChangeSupport   jalview.gui.JalviewChangeSupport 0.2525%
jalview.viewmodel.seqfeatures.FeaturesDisplayed   jalview.viewmodel.seqfeatures.FeaturesDisplayed 0.2525%
jalview.ws.uimodel.AlignAnalysisUIText   jalview.ws.uimodel.AlignAnalysisUIText 0.2439024424.4%
jalview.ws.rest.params.Alignment   jalview.ws.rest.params.Alignment 0.2435897424.4%
jalview.datamodel.Sequence   jalview.datamodel.Sequence 0.2430795924.3%
jalview.gui.AlignViewport   jalview.gui.AlignViewport 0.2424892624.2%
jalview.io.FileFormats   jalview.io.FileFormats 0.2424%
jalview.viewmodel.AlignmentViewport   jalview.viewmodel.AlignmentViewport 0.2379943423.8%
jalview.datamodel.features.SequenceFeatures   jalview.datamodel.features.SequenceFeatures 0.235668823.6%
jalview.ws.jws2.Jws2Discoverer   jalview.ws.jws2.Jws2Discoverer 0.2336633723.4%
jalview.datamodel.SequenceCursor   jalview.datamodel.SequenceCursor 0.2333333323.3%
jalview.gui.AlignmentPanel   jalview.gui.AlignmentPanel 0.2273262622.7%
org.json.JSONObject   org.json.JSONObject 0.2235965722.4%
jalview.ws.jws2.Jws2Client   jalview.ws.jws2.Jws2Client 0.2228915722.3%
jalview.ws.rest.InputType   jalview.ws.rest.InputType 0.2056074720.6%
jalview.analysis.AnnotationSorter   jalview.analysis.AnnotationSorter 0.1970443319.7%
jalview.schemes.ColourSchemeProperty   jalview.schemes.ColourSchemeProperty 0.1944444519.4%
jalview.util.JSONUtils   jalview.util.JSONUtils 0.1818181918.2%
jalview.util.Format   jalview.util.Format 0.1780538317.8%
jalview.schemes.IdColourScheme   jalview.schemes.IdColourScheme 0.1739130517.4%
jalview.analysis.scoremodels.ScoreModels   jalview.analysis.scoremodels.ScoreModels 0.1636363616.4%
jalview.ws.jws1.WS1Client   jalview.ws.jws1.WS1Client 0.1616%
jalview.datamodel.Alignment   jalview.datamodel.Alignment 0.150278315%
jalview.viewmodel.ViewportRanges   jalview.viewmodel.ViewportRanges 0.1485148514.9%
jalview.schemes.TCoffeeColourScheme   jalview.schemes.TCoffeeColourScheme 0.1475409914.8%
jalview.datamodel.AlignmentAnnotation   jalview.datamodel.AlignmentAnnotation 0.1467661714.7%
jalview.datamodel.SequenceGroup   jalview.datamodel.SequenceGroup 0.1460674114.6%
jalview.gui.PaintRefresher   jalview.gui.PaintRefresher 0.1408450814.1%
jalview.datamodel.HiddenSequences   jalview.datamodel.HiddenSequences 0.132420113.2%
jalview.datamodel.HiddenColumns   jalview.datamodel.HiddenColumns 0.127358512.7%
jalview.io.AppletFormatAdapter   jalview.io.AppletFormatAdapter 0.12422360512.4%
jalview.ws.rest.params.SeqGroupIndexVector   jalview.ws.rest.params.SeqGroupIndexVector 0.12408759412.4%
jalview.schemes.Blosum62ColourScheme   jalview.schemes.Blosum62ColourScheme 0.1176470611.8%
jalview.ws.rest.RestClient   jalview.ws.rest.RestClient 0.11538461611.5%
jalview.datamodel.Annotation   jalview.datamodel.Annotation 0.11428571511.4%
jalview.util.ShortcutKeyMaskExWrapper   jalview.util.ShortcutKeyMaskExWrapper 0.1111111111.1%
jalview.io.FileFormat   jalview.io.FileFormat 0.1085271310.9%
jalview.util.QuickSort   jalview.util.QuickSort 0.10679611610.7%
jalview.ws.rest.params.AnnotationFile   jalview.ws.rest.params.AnnotationFile 0.10256410410.3%
jalview.gui.AlignFrame   jalview.gui.AlignFrame 0.098700399.9%
jalview.util.StringUtils   jalview.util.StringUtils 0.098461549.8%
jalview.renderer.ResidueShader   jalview.renderer.ResidueShader 0.097560979.8%
jalview.json.binding.biojson.v1.ColourSchemeMapper   jalview.json.binding.biojson.v1.ColourSchemeMapper 0.096774199.7%
org.json.simple.parser.Yytoken   org.json.simple.parser.Yytoken 0.096774199.7%
jalview.util.ColorUtils   jalview.util.ColorUtils 0.096774199.7%
jalview.workers.AlignCalcWorker   jalview.workers.AlignCalcWorker 0.09523819.5%
jalview.datamodel.SequenceFeature   jalview.datamodel.SequenceFeature 0.0863309358.6%
jalview.util.Platform   jalview.util.Platform 0.084905668.5%
jalview.gui.Console   jalview.gui.Console 0.082568818.3%
jalview.schemes.RNAHelicesColour   jalview.schemes.RNAHelicesColour 0.082191788.2%
jalview.gui.ProgressBar   jalview.gui.ProgressBar 0.081300818.1%
jalview.schemes.ColourSchemes   jalview.schemes.ColourSchemes 0.070175447%
jalview.analysis.scoremodels.ScoreMatrix   jalview.analysis.scoremodels.ScoreMatrix 0.069958857%
org.json.JSONArray   org.json.JSONArray 0.0691489356.9%
jalview.gui.IdPanel   jalview.gui.IdPanel 0.067264576.7%
jalview.schemes.PIDColourScheme   jalview.schemes.PIDColourScheme 0.066666676.7%
jalview.log.JLogger   jalview.log.JLogger 0.065934076.6%
jalview.gui.IdwidthAdjuster   jalview.gui.IdwidthAdjuster 0.0657894766.6%
jalview.analysis.CrossRef   jalview.analysis.CrossRef 0.063524596.4%
ext.vamsas.ServiceHandle   ext.vamsas.ServiceHandle 0.061224496.1%
jalview.gui.ViewSelectionMenu   jalview.gui.ViewSelectionMenu 0.059405945.9%
jalview.ws.jws1.Discoverer   jalview.ws.jws1.Discoverer 0.0512820525.1%
jalview.analysis.GeneticCodes   jalview.analysis.GeneticCodes 0.0496894425%
jalview.bin.Console   jalview.bin.Console 0.0492610824.9%
jalview.datamodel.SecondaryStructureCount   jalview.datamodel.SecondaryStructureCount 0.0468754.7%
jalview.gui.AnnotationPanel   jalview.gui.AnnotationPanel 0.044117654.4%
jalview.ws.jws2.JabaParamStore   jalview.ws.jws2.JabaParamStore 0.0416666684.2%
jalview.bin.Cache   jalview.bin.Cache 0.0385674953.9%
org.json.simple.JSONObject   org.json.simple.JSONObject 0.037735853.8%
jalview.datamodel.ColumnSelection.IntList   jalview.datamodel.ColumnSelection.IntList 0.0373831763.7%
jalview.structure.StructureSelectionManager   jalview.structure.StructureSelectionManager 0.0339393953.4%
jalview.ws.jws1.JPredClient   jalview.ws.jws1.JPredClient 0.0310559013.1%
jalview.gui.IdCanvas   jalview.gui.IdCanvas 0.0245614032.5%
jalview.util.DBRefUtils   jalview.util.DBRefUtils 0.0241691842.4%
jalview.renderer.ResidueColourFinder   jalview.renderer.ResidueColourFinder 0.0238095242.4%
jalview.viewmodel.seqfeatures.FeatureRendererModel   jalview.viewmodel.seqfeatures.FeatureRendererModel 0.023474182.3%
jalview.analysis.AlignmentUtils   jalview.analysis.AlignmentUtils 0.0229809582.3%
jalview.gui.ScalePanel   jalview.gui.ScalePanel 0.022471912.2%
jalview.schemes.ClustalxColourScheme   jalview.schemes.ClustalxColourScheme 0.0169491531.7%
jalview.gui.SequenceRenderer   jalview.gui.SequenceRenderer 0.0144230771.4%
jalview.controller.AlignViewController   jalview.controller.AlignViewController 0.0136518771.4%
jalview.analysis.AlignSeq   jalview.analysis.AlignSeq 0.0128205131.3%
jalview.gui.SeqPanel   jalview.gui.SeqPanel 0.0125082291.3%
jalview.io.SequenceAnnotationReport   jalview.io.SequenceAnnotationReport 0.0122699381.2%
jalview.gui.AnnotationLabels   jalview.gui.AnnotationLabels 0.0110497241.1%
org.json.simple.JSONArray   org.json.simple.JSONArray 0.0080645160.8%
jalview.gui.SeqCanvas   jalview.gui.SeqCanvas 0.0080160320.8%
jalview.renderer.seqfeatures.FeatureRenderer   jalview.renderer.seqfeatures.FeatureRenderer 0.007547170.8%
jalview.bin.Jalview   jalview.bin.Jalview 0.00451263550.5%
jalview.renderer.AnnotationRenderer   jalview.renderer.AnnotationRenderer 0.00357142860.4%
jalview.datamodel.ColumnSelection   jalview.datamodel.ColumnSelection 0.00343642620.3%
jalview.gui.Desktop   jalview.gui.Desktop 0.00227790440.2%
  • Report generated by OpenClover v 4.4.1 on Mon Nov 18 2024 09:54:26 GMT using coverage data from Mon Nov 18 2024 09:54:15 GMT.
  • OpenClover is free and open-source software.