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jalview.io.DataSourceType
jalview.io.DataSourceType
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1.0100%
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jalview.renderer.ScaleRenderer.ScaleMark
jalview.renderer.ScaleRenderer.ScaleMark
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1.0100%
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jalview.datamodel.SecondaryStructureCount.SymbolCounts
jalview.datamodel.SecondaryStructureCount.SymbolCounts
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1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
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1.0100%
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jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
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0.9494%
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jalview.datamodel.Profiles
jalview.datamodel.Profiles
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0.866666786.7%
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jalview.analysis.Conservation
jalview.analysis.Conservation
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0.861575286.2%
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jalview.util.QuickSort.IntComparator
jalview.util.QuickSort.IntComparator
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0.8571428785.7%
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jalview.json.binding.biojs.BioJSReleasePojo
jalview.json.binding.biojs.BioJSReleasePojo
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0.8461538684.6%
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jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
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0.7727272577.3%
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jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
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0.7575%
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jalview.workers.SecondaryStructureConsensusThread
jalview.workers.SecondaryStructureConsensusThread
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0.735294173.5%
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jalview.io.JalviewFileChooser.RecentlyOpened
jalview.io.JalviewFileChooser.RecentlyOpened
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0.7333333573.3%
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jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
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0.7142857371.4%
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
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0.7142857371.4%
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jalview.io.JalviewFileFilter
jalview.io.JalviewFileFilter
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0.71296371.3%
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jalview.datamodel.Profile
jalview.datamodel.Profile
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0.70491870.5%
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jalview.ws.jws2.jabaws2.Jws2InstanceFactory
jalview.ws.jws2.jabaws2.Jws2InstanceFactory
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0.770%
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jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
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0.696969769.7%
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jalview.json.binding.biojs.BioJSRepositoryPojo
jalview.json.binding.biojs.BioJSRepositoryPojo
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0.687568.8%
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jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
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0.666666766.7%
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jalview.util.ParseHtmlBodyAndLinks
jalview.util.ParseHtmlBodyAndLinks
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0.594202959.4%
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jalview.jbgui.GAlignFrame
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0.5731370457.3%
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jalview.workers.ConservationThread
jalview.workers.ConservationThread
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0.5666666656.7%
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jalview.renderer.ScaleRenderer
jalview.renderer.ScaleRenderer
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0.5656%
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jalview.io.BioJsHTMLOutput
jalview.io.BioJsHTMLOutput
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0.53653.6%
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jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
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0.5287356452.9%
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jalview.workers.AlignCalcManager
jalview.workers.AlignCalcManager
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0.550%
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jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
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0.550%
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jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
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0.550%
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jalview.schemes.FlowerColourScheme
jalview.schemes.FlowerColourScheme
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0.550%
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jalview.schemes.NucleotideAmbiguityColourScheme
jalview.schemes.NucleotideAmbiguityColourScheme
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0.550%
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jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
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0.550%
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
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0.550%
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jalview.schemes.BlossomColourScheme
jalview.schemes.BlossomColourScheme
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0.550%
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jalview.schemes.SunsetColourScheme
jalview.schemes.SunsetColourScheme
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0.550%
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jalview.schemes.OceanColourScheme
jalview.schemes.OceanColourScheme
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0.550%
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
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0.4436363644.4%
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jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
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0.4322033843.2%
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jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
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0.4285714342.9%
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jalview.util.ShortcutKeyMaskExWrapper11
jalview.util.ShortcutKeyMaskExWrapper11
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0.4166666641.7%
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jalview.io.FileLoader
jalview.io.FileLoader
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0.4113712341.1%
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
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0.4086538640.9%
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
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0.440%
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jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
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0.440%
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jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
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0.440%
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jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
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0.440%
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jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
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0.440%
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
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0.388888938.9%
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org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
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0.3853503238.5%
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
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0.37537.5%
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jalview.io.AlignFile
jalview.io.AlignFile
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0.36986337%
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jalview.io.FastaFile
jalview.io.FastaFile
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0.3603603536%
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jalview.io.FileFormats
jalview.io.FileFormats
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0.3636%
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jalview.util.MessageManager
jalview.util.MessageManager
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0.3571428735.7%
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jalview.gui.PromptUserConfig
jalview.gui.PromptUserConfig
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0.3522727235.2%
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jalview.util.Comparison
jalview.util.Comparison
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0.350393735%
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jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
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0.3369565333.7%
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
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0.3135313431.4%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
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0.2956419329.6%
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org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
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0.2945544429.5%
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
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0.285714328.6%
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jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
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0.285714328.6%
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
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0.2803571528%
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
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0.279365127.9%
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
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0.273684227.4%
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
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0.2682403326.8%
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jalview.gui.QuitHandler
jalview.gui.QuitHandler
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0.2671480226.7%
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jalview.io.FileParse
jalview.io.FileParse
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0.250696425.1%
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jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
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0.2525%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
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0.2525%
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jalview.renderer.AnnotationRendererFactory
jalview.renderer.AnnotationRendererFactory
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0.2525%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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0.2478813524.8%
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
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0.2134146421.3%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
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0.2097378221%
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jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
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0.1914062519.1%
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
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0.1900552519%
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jalview.log.JLogger
jalview.log.JLogger
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0.1868131918.7%
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jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
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0.1739130517.4%
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jalview.io.JalviewFileChooser
jalview.io.JalviewFileChooser
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0.1716621217.2%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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0.1688311716.9%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
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0.1674876816.7%
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jalview.util.QuickSort
jalview.util.QuickSort
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0.1650485416.5%
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
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0.1636363616.4%
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jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
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0.1562515.6%
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jalview.util.Format
jalview.util.Format
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0.1490683314.9%
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jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
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0.1475409914.8%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
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0.1428571514.3%
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
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0.1408450814.1%
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jalview.util.HttpUtils
jalview.util.HttpUtils
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0.1345029213.5%
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jalview.gui.UserQuestionnaireCheck
jalview.gui.UserQuestionnaireCheck
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0.1325301213.3%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
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0.1281512712.8%
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
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0.1212%
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
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0.1176470611.8%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.1156462611.6%
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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0.11428571511.4%
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jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
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0.1111111111.1%
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jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
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0.1111111111.1%
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jalview.io.FileFormat
jalview.io.FileFormat
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0.1085271310.9%
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jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
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0.10679611610.7%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
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0.10416666410.4%
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jalview.bin.Console
jalview.bin.Console
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0.1034482810.3%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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0.1003460210%
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jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
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0.0993788849.9%
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org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
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0.096774199.7%
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jalview.util.ColorUtils
jalview.util.ColorUtils
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0.096774199.7%
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
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0.09523819.5%
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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0.093186379.3%
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jalview.util.JSONUtils
jalview.util.JSONUtils
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0.090909099.1%
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jalview.util.Platform
jalview.util.Platform
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0.089622649%
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jalview.gui.Desktop
jalview.gui.Desktop
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0.086560368.7%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
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0.084577118.5%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
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0.082191788.2%
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
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0.081300818.1%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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0.079381817.9%
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jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
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0.070175447%
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
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0.069958857%
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jalview.gui.IdPanel
jalview.gui.IdPanel
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0.067264576.7%
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jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
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0.066666676.7%
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jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
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0.066666676.7%
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
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0.063524596.4%
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
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0.059405945.9%
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jalview.ws.utils.UrlDownloadClient
jalview.ws.utils.UrlDownloadClient
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0.0571428575.7%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
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0.0560747655.6%
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
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0.0496894425%
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jalview.bin.Cache
jalview.bin.Cache
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0.0454545474.5%
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jalview.gui.WsParamSetManager
jalview.gui.WsParamSetManager
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0.0429447854.3%
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org.json.simple.JSONObject
org.json.simple.JSONObject
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0.037735853.8%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
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0.037735853.8%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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0.0339393953.4%
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
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0.027397262.7%
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
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0.0257425742.6%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.0246153852.5%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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0.0241691842.4%
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jalview.gui.Console
jalview.gui.Console
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0.0206422022.1%
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
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0.0169491531.7%
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jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
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0.016414971.6%
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jalview.io.BackupFiles
jalview.io.BackupFiles
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0.0161.6%
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
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0.0156251.6%
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
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0.0136518771.4%
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jalview.datamodel.SearchResults
jalview.datamodel.SearchResults
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0.0128205131.3%
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
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0.0128205131.3%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
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0.0127388541.3%
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
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0.0125082291.3%
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
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0.0122699381.2%
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
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0.0103092781%
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jalview.gui.JvOptionPane
jalview.gui.JvOptionPane
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0.0090090090.9%
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jalview.bin.Jalview
jalview.bin.Jalview
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0.0081227440.8%
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org.json.simple.JSONArray
org.json.simple.JSONArray
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0.0080645160.8%
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
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0.007547170.8%
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jalview.project.Jalview2XML
jalview.project.Jalview2XML
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0.00483214670.5%
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