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mc_view.Residue
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mc_view.PDBChain
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mc_view.Bond
mc_view.Bond
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com.stevesoft.pat.oneChar
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jalview.gui.ColourMenuHelper
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jalview.io.StructureFile
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jalview.bin.Commands
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jalview.datamodel.ResidueCount
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jalview.gui.AppJmol
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jalview.bin.argparser.ArgValuesMap
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jalview.util.ShortcutKeyMaskExWrapper11
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jalview.ext.so.SequenceOntology
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jalview.datamodel.Profile
jalview.datamodel.Profile
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jalview.gui.AppJmolBinding
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jalview.util.Comparison
jalview.util.Comparison
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jalview.bin.Cache
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jalview.util.MessageManager
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jalview.datamodel.Annotation
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jalview.io.AlignFile
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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jalview.renderer.seqfeatures.FeatureColourFinder
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com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
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mc_view.Atom
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jalview.ws.jws2.JabaPreset
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jalview.gui.StructureViewerBase
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com.stevesoft.pat.Or
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jalview.datamodel.features.FeatureStore
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com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
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0.250909125.1%
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jalview.gui.JalviewChangeSupport
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0.2525%
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jalview.io.gff.SequenceOntologyFactory
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jalview.ws.rest.params.Alignment
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jalview.viewmodel.AlignmentViewport
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jalview.bin.BuildDetails
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jalview.structure.StructureCommandsBase
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0.2317073223.2%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.2312925223.1%
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com.stevesoft.pat.Range
com.stevesoft.pat.Range
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
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0.22522.5%
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jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
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0.224806222.5%
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jalview.viewmodel.seqfeatures.FeaturesDisplayed
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jalview.util.HttpUtils
jalview.util.HttpUtils
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jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
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0.2056074720.6%
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jalview.io.FileParse
jalview.io.FileParse
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0.2033426220.3%
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
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0.187763718.8%
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jalview.bin.Console
jalview.bin.Console
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0.1871921118.7%
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jalview.log.JLogger
jalview.log.JLogger
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jalview.util.ImageMaker.TYPE
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jalview.schemes.TCoffeeColourScheme
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jalview.util.QuickSort
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com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
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jalview.io.AppletFormatAdapter
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jalview.structure.StructureMapping
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0.1606217616.1%
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jalview.ws.jws1.WS1Client
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jalview.bin.Jalview
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jalview.fts.core.FTSRestClient
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jalview.gui.StructureViewer
jalview.gui.StructureViewer
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0.1386138613.9%
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jalview.datamodel.ContactMapHolder
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0.1346153913.5%
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jalview.schemes.PIDColourScheme
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jalview.gui.AlignFrame
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jalview.ws.rest.params.SeqGroupIndexVector
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jalview.util.Platform
jalview.util.Platform
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jalview.ext.jmol.JmolCommands
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jalview.io.FormatAdapter
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0.1212%
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jalview.structure.StructureCommand
jalview.structure.StructureCommand
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jalview.util.ColorUtils
jalview.util.ColorUtils
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jalview.ws.rest.RestClient
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jalview.renderer.ResidueShader
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jalview.util.MapList
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0.1121495311.2%
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jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
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jalview.schemes.ColourSchemeProperty
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jalview.util.StringUtils
jalview.util.StringUtils
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jalview.schemes.RNAHelicesColour
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jalview.log.JLoggerLog4j
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jalview.util.FileUtils
jalview.util.FileUtils
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jalview.datamodel.Mapping
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jalview.analysis.scoremodels.ScoreMatrix
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jalview.datamodel.DBRefEntry
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jalview.ws.rest.params.AnnotationFile
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jalview.bin.argparser.Arg
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com.stevesoft.pat.parsePerl
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jalview.gui.StructureChooser
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jalview.workers.AlignCalcWorker
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jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient
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jalview.io.FileFormat
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jalview.schemes.FeatureColour
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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jalview.ws.dbsources.Xfam
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jalview.ws.dbsources.Pdb
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jalview.ws.jws2.Jws2Client
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jalview.ext.ensembl.EnsemblSequenceFetcher
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jalview.ws.seqfetcher.DbSourceProxyImpl
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jalview.gui.IdCanvas
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jalview.util.ChannelProperties
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com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
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jalview.gui.Desktop
jalview.gui.Desktop
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jalview.schemes.ColourSchemes
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jalview.gui.IdPanel
jalview.gui.IdPanel
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jalview.util.LaunchUtils
jalview.util.LaunchUtils
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
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jalview.fts.service.pdb.PDBFTSRestClient
jalview.fts.service.pdb.PDBFTSRestClient
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com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
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jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
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jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
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jalview.gui.Desktop.MyDesktopPane
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
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com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
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jalview.gui.Console
jalview.gui.Console
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jalview.gui.structurechooser.PDBStructureChooserQuerySource
jalview.gui.structurechooser.PDBStructureChooserQuerySource
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
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jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
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mc_view.PDBfile
mc_view.PDBfile
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
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jalview.datamodel.SearchResults
jalview.datamodel.SearchResults
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
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jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
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jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
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jalview.gui.QuitHandler
jalview.gui.QuitHandler
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
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com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
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jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
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0.00105042020.1%
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