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Coverage Report

Class AlignmentUtilsTests

 
AlignmentUtilsTests 4444 00 00 0.029
1.0100%
 
AlignmentUtilsTests.testAddReferenceAnnotationsAlignmentUtilsTests.testAddReferenceAnnotations 173151444287813 Nov 16:14:02 1PASS 0.0010.001  
AlignmentUtilsTests.testTransferFeatures_withOmitAlignmentUtilsTests.testTransferFeatures_withOmit 173151444292613 Nov 16:14:02 1PASS 0.00  
AlignmentUtilsTests.testMakeCdsAlignmentAlignmentUtilsTests.testMakeCdsAlignment 173151444290913 Nov 16:14:02 1PASS 0.0020.002  
AlignmentUtilsTests.testFindCdsForProteinAlignmentUtilsTests.testFindCdsForProtein 173151444290313 Nov 16:14:02 1PASS 0.0010.001  
AlignmentUtilsTests.testFindCdsPositions_fivePrimeIncompleteAlignmentUtilsTests.testFindCdsPositions_fivePrimeIncomplete 173151444290613 Nov 16:14:02 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_mappedProteinProteinAlignmentUtilsTests.testAlignSequenceAs_mappedProteinProtein 173151444289213 Nov 16:14:02 1PASS 0.00  
AlignmentUtilsTests.testMakeCdsAlignment_filterProductsAlignmentUtilsTests.testMakeCdsAlignment_filterProducts 173151444291313 Nov 16:14:02 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_withUnmappedProteinAlignmentUtilsTests.testAlignSequenceAs_withMapping_withUnmappedProtein 173151444289513 Nov 16:14:02 1PASS 0.00  
AlignmentUtilsTests.testAddMappedPositionsAlignmentUtilsTests.testAddMappedPositions 173151444287613 Nov 16:14:02 1PASS 0.00  
AlignmentUtilsTests.testHaveCrossRefAlignmentUtilsTests.testHaveCrossRef 173151444290813 Nov 16:14:02 1PASS 0.00  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 173151444292413 Nov 16:14:02 1PASS 0.00  
AlignmentUtilsTests.testAddReferenceContactMapAlignmentUtilsTests.testAddReferenceContactMap 173151444288013 Nov 16:14:02 1PASS 0.0010.001  
AlignmentUtilsTests.testIsMappableAlignmentUtilsTests.testIsMappable 173151444290913 Nov 16:14:02 1PASS 0.00  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_prioritiseXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_prioritiseXrefs 173151444291913 Nov 16:14:02 1PASS 0.00  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_withStartAndStopCodonsAlignmentUtilsTests.testMapProteinAlignmentToCdna_withStartAndStopCodons 173151444291913 Nov 16:14:02 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignSequenceAs_withTrailingPeptideAlignmentUtilsTests.testAlignSequenceAs_withTrailingPeptide 173151444289513 Nov 16:14:02 1PASS 0.00  
AlignmentUtilsTests.testShowOrHideSequenceAnnotationsAlignmentUtilsTests.testShowOrHideSequenceAnnotations 173151444292413 Nov 16:14:02 1PASS 0.00  
AlignmentUtilsTests.testMakeCdsAlignment_multipleProteinsAlignmentUtilsTests.testMakeCdsAlignment_multipleProteins 173151444291413 Nov 16:14:02 1PASS 0.0010.001  
AlignmentUtilsTests.testTransferGeneLociAlignmentUtilsTests.testTransferGeneLoci 173151444292813 Nov 16:14:02 1PASS 0.0010.001  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_withXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_withXrefs 173151444292013 Nov 16:14:02 1PASS 0.0010.001  
AlignmentUtilsTests.testFindCdsForProtein_noUTRAlignmentUtilsTests.testFindCdsForProtein_noUTR 173151444290413 Nov 16:14:02 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignProteinAsDna_incompleteStartCodonAlignmentUtilsTests.testAlignProteinAsDna_incompleteStartCodon 173151444289113 Nov 16:14:02 1PASS 0.00  
AlignmentUtilsTests.testFindCdsPositionsAlignmentUtilsTests.testFindCdsPositions 173151444290513 Nov 16:14:02 1PASS 0.00  
AlignmentUtilsTests.testTransferFeaturesAlignmentUtilsTests.testTransferFeatures 173151444292513 Nov 16:14:02 1PASS 0.00  
AlignmentUtilsTests.testMakeCdsAlignment_alternativeTranscriptsAlignmentUtilsTests.testMakeCdsAlignment_alternativeTranscripts 173151444291213 Nov 16:14:02 1PASS 0.00  
AlignmentUtilsTests.testMapCdnaToProtein_forSubsequenceAlignmentUtilsTests.testMapCdnaToProtein_forSubsequence 173151444291513 Nov 16:14:02 1PASS 0.00  
AlignmentUtilsTests.testHasCrossRefAlignmentUtilsTests.testHasCrossRef 173151444290713 Nov 16:14:02 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignSequenceAs_keepIntronGapsOnlyAlignmentUtilsTests.testAlignSequenceAs_keepIntronGapsOnly 173151444289113 Nov 16:14:02 1PASS 0.0010.001  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_noXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_noXrefs 173151444291813 Nov 16:14:02 1PASS 0.00  
AlignmentUtilsTests.testAlignAs_alternateTranscriptsUngappedAlignmentUtilsTests.testAlignAs_alternateTranscriptsUngapped 173151444288713 Nov 16:14:02 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignAsSameSequencesMultipleSubSeqAlignmentUtilsTests.testAlignAsSameSequencesMultipleSubSeq 173151444288713 Nov 16:14:02 1PASS 0.00  
AlignmentUtilsTests.testAddMappedPositions_withStopCodonAlignmentUtilsTests.testAddMappedPositions_withStopCodon 173151444287713 Nov 16:14:02 1PASS 0.00  
AlignmentUtilsTests.testExpandContextAlignmentUtilsTests.testExpandContext 173151444289613 Nov 16:14:02 1PASS 0.0060.006  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_withIntronsAlignmentUtilsTests.testAlignSequenceAs_withMapping_withIntrons 173151444289413 Nov 16:14:02 1PASS 0.00  
AlignmentUtilsTests.testAlignAsSameSequencesAlignmentUtilsTests.testAlignAsSameSequences 173151444288213 Nov 16:14:02 1PASS 0.0040.004  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_noIntronsAlignmentUtilsTests.testAlignSequenceAs_withMapping_noIntrons 173151444289313 Nov 16:14:02 1PASS 0.00  
AlignmentUtilsTests.testExpandContext_annotationAlignmentUtilsTests.testExpandContext_annotation 173151444290213 Nov 16:14:02 1PASS 0.0010.001  
AlignmentUtilsTests.testMapCdsToProteinAlignmentUtilsTests.testMapCdsToProtein 173151444291613 Nov 16:14:02 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignProteinAsDnaAlignmentUtilsTests.testAlignProteinAsDna 173151444288813 Nov 16:14:02 1PASS 0.0020.002  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 173151444292213 Nov 16:14:02 1PASS 0.00  
AlignmentUtilsTests.testTransferFeatures_withSelectAlignmentUtilsTests.testTransferFeatures_withSelect 173151444292713 Nov 16:14:02 1PASS 0.00  
AlignmentUtilsTests.testGetSequencesByNameAlignmentUtilsTests.testGetSequencesByName 173151444290613 Nov 16:14:02 1PASS 0.0010.001  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 173151444292313 Nov 16:14:02 1PASS 0.00  
AlignmentUtilsTests.testTranslatesAsAlignmentUtilsTests.testTranslatesAs 173151444292913 Nov 16:14:02 1PASS 0.0010.001