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com.stevesoft.pat.patInf
com.stevesoft.pat.patInf
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jalview.io.DataSourceType
jalview.io.DataSourceType
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1.0100%
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jalview.ws.WSClient
jalview.ws.WSClient
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1.0100%
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jalview.datamodel.SecondaryStructureCount.SymbolCounts
jalview.datamodel.SecondaryStructureCount.SymbolCounts
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1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
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1.0100%
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jalview.structure.StructureImportSettings.TFType
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1.0100%
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jalview.jbgui.GAlignmentPanel
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0.9494%
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jalview.util.UserAgent
jalview.util.UserAgent
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0.885714388.6%
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jalview.analysis.Conservation
jalview.analysis.Conservation
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0.8842364588.4%
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jalview.util.imagemaker.BitmapImageSizing
jalview.util.imagemaker.BitmapImageSizing
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0.8709677587.1%
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jalview.util.QuickSort.IntComparator
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jalview.gui.StructureViewer.ViewerType
jalview.gui.StructureViewer.ViewerType
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0.8461538684.6%
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com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
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mc_view.Residue
mc_view.Residue
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0.8461538684.6%
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jalview.datamodel.Profiles
jalview.datamodel.Profiles
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jalview.structure.AtomSpecModel
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jalview.datamodel.Profile
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0.803278780.3%
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jalview.util.LinkedIdentityHashSet
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0.7727272577.3%
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jalview.workers.SecondaryStructureConsensusThread
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0.7629629476.3%
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jalview.structures.models.SequenceStructureBindingModel
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jalview.gui.FeatureRenderer
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
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jalview.jbgui.GStructureViewer
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jalview.workers.ConsensusThread
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jalview.ws.SequenceFetcher
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jalview.ws.sifts.SiftsSettings
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jalview.workers.ConservationThread
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jalview.jbgui.GAlignFrame
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jalview.bin.ArgsParser
jalview.bin.ArgsParser
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0.5555%
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0.541666754.2%
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mc_view.PDBChain
mc_view.PDBChain
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jalview.util.ImageMaker
jalview.util.ImageMaker
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com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
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jalview.ext.jmol.JmolParser
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jalview.bin.argparser.ArgParser
jalview.bin.argparser.ArgParser
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0.5097744551%
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jalview.gui.AssociatePdbFileWithSeq
jalview.gui.AssociatePdbFileWithSeq
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0.550%
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jalview.viewmodel.ViewportProperties
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0.550%
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jalview.urls.IdOrgSettings
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0.550%
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mc_view.Bond
mc_view.Bond
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0.550%
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jalview.schemes.TaylorColourScheme
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0.550%
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jalview.schemes.FlowerColourScheme
jalview.schemes.FlowerColourScheme
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0.550%
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jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
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0.550%
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jalview.schemes.NucleotideAmbiguityColourScheme
jalview.schemes.NucleotideAmbiguityColourScheme
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0.550%
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jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
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0.550%
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
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0.550%
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jalview.schemes.BlossomColourScheme
jalview.schemes.BlossomColourScheme
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0.550%
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jalview.schemes.SunsetColourScheme
jalview.schemes.SunsetColourScheme
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0.550%
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jalview.schemes.OceanColourScheme
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0.550%
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jalview.io.AlignFile
jalview.io.AlignFile
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0.4863013648.6%
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jalview.jbgui.GStructureChooser
jalview.jbgui.GStructureChooser
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0.4727722747.3%
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jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
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0.4710743747.1%
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jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
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0.466101746.6%
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
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0.4581818345.8%
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jalview.gui.AppJmol
jalview.gui.AppJmol
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0.454887245.5%
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jalview.bin.argparser.ArgValuesMap
jalview.bin.argparser.ArgValuesMap
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0.4523227545.2%
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jalview.bin.argparser.ArgValue
jalview.bin.argparser.ArgValue
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0.447761244.8%
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jalview.io.StructureFile
jalview.io.StructureFile
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0.4465116344.7%
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jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
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0.4414062544.1%
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jalview.bin.Commands
jalview.bin.Commands
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0.4399494244%
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jalview.bin.argparser.SubVals
jalview.bin.argparser.SubVals
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0.432989743.3%
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jalview.datamodel.HiddenCursorPosition
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0.4285714342.9%
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
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0.4256410342.6%
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jalview.gui.ImageExporter
jalview.gui.ImageExporter
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0.4242424442.4%
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jalview.util.ShortcutKeyMaskExWrapper11
jalview.util.ShortcutKeyMaskExWrapper11
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0.4166666641.7%
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jalview.io.FileLoader
jalview.io.FileLoader
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0.414715741.5%
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jalview.ext.so.SequenceOntology
jalview.ext.so.SequenceOntology
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0.412541.2%
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jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
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0.404761940.5%
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jalview.io.FileFormats
jalview.io.FileFormats
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0.440%
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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0.440%
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
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0.440%
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jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
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0.440%
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jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
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0.440%
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jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
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0.440%
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jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
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0.440%
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jalview.structure.StructureImportSettings
jalview.structure.StructureImportSettings
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0.440%
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jalview.datamodel.PDBEntry
jalview.datamodel.PDBEntry
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0.3913043439.1%
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
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jalview.util.Comparison
jalview.util.Comparison
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jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
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jalview.util.Format
jalview.util.Format
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0.3685300436.9%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
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jalview.bin.Cache
jalview.bin.Cache
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0.3608815436.1%
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
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jalview.io.FastaFile
jalview.io.FastaFile
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0.3603603536%
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jalview.util.MessageManager
jalview.util.MessageManager
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0.3571428735.7%
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jalview.bin.argparser.ArgValues
jalview.bin.argparser.ArgValues
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0.3571428735.7%
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jalview.gui.AppJmolBinding
jalview.gui.AppJmolBinding
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0.3551401835.5%
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jalview.jbgui.GStructureChooser.AssociateSeqPanel
jalview.jbgui.GStructureChooser.AssociateSeqPanel
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0.352941235.3%
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
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0.3497942435%
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jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
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0.3489208534.9%
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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0.3428571534.3%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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0.335887633.6%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
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0.3248407532.5%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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0.3174740431.7%
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jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
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0.315217431.5%
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jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
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0.31531.5%
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com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
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0.3142857331.4%
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jalview.renderer.seqfeatures.FeatureColourFinder
jalview.renderer.seqfeatures.FeatureColourFinder
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0.313725531.4%
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jalview.structures.models.AAStructureBindingModel
jalview.structures.models.AAStructureBindingModel
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0.2919109229.2%
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jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
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0.285714328.6%
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jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
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0.285714328.6%
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jalview.datamodel.annotations.AnnotationRowBuilder
jalview.datamodel.annotations.AnnotationRowBuilder
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0.282051328.2%
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mc_view.Atom
mc_view.Atom
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0.282051328.2%
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jalview.gui.structurechooser.StructureChooserQuerySource
jalview.gui.structurechooser.StructureChooserQuerySource
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0.2828%
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
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0.279365127.9%
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jalview.io.FileParse
jalview.io.FileParse
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0.2785515227.9%
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jalview.util.FileUtils
jalview.util.FileUtils
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0.2741935627.4%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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0.2697947327%
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jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
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0.2608695626.1%
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jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
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jalview.gui.StructureViewerBase
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0.2522255225.2%
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jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
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0.2525%
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jalview.io.gff.SequenceOntologyFactory
jalview.io.gff.SequenceOntologyFactory
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0.2525%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
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0.2438162624.4%
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jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
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0.2435897424.4%
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jalview.structure.StructureMapping
jalview.structure.StructureMapping
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0.2435233124.4%
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jalview.util.ErrorLog
jalview.util.ErrorLog
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0.2352941223.5%
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jalview.bin.BuildDetails
jalview.bin.BuildDetails
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0.2352941223.5%
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jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
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0.2333333323.3%
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jalview.structure.StructureCommandsBase
jalview.structure.StructureCommandsBase
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0.2317073223.2%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.2312925223.1%
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com.stevesoft.pat.Range
com.stevesoft.pat.Range
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0.2272727322.7%
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com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
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0.22522.5%
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jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
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0.224806222.5%
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jalview.util.HttpUtils
jalview.util.HttpUtils
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0.2222222222.2%
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jalview.viewmodel.seqfeatures.FeaturesDisplayed
jalview.viewmodel.seqfeatures.FeaturesDisplayed
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0.2187521.9%
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jalview.io.PDBFeatureSettings
jalview.io.PDBFeatureSettings
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0.2142857221.4%
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jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
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0.2127659621.3%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
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0.2118226621.2%
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
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0.2115384621.2%
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com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
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0.2072727220.7%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
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0.2056074720.6%
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jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
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0.2050078220.5%
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jalview.fts.core.FTSDataColumnPreferences.FTSDataColumnPrefsTableModel
jalview.fts.core.FTSDataColumnPreferences.FTSDataColumnPrefsTableModel
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0.1857142918.6%
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jalview.util.ImageMaker.TYPE
jalview.util.ImageMaker.TYPE
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0.1818181918.2%
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com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
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0.1805555518.1%
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jalview.schemes.TCoffeeColourScheme
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0.1803278618%
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
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0.176470617.6%
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com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
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0.17517.5%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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0.1731843517.3%
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jalview.bin.Console
jalview.bin.Console
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0.172413817.2%
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jalview.jbgui.GStructureChooser.CustomComboSeparatorsRenderer
jalview.jbgui.GStructureChooser.CustomComboSeparatorsRenderer
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0.1666666716.7%
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jalview.util.QuickSort
jalview.util.QuickSort
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0.1650485416.5%
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jalview.log.JLogger
jalview.log.JLogger
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0.1648351716.5%
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jalview.ws.jws1.WS1Client
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0.1616%
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jalview.gui.PaintRefresher
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0.1549295815.5%
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jalview.bin.Jalview
jalview.bin.Jalview
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0.149819515%
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jalview.fts.core.FTSRestClient
jalview.fts.core.FTSRestClient
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jalview.io.AppletFormatAdapter
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0.1428571514.3%
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jalview.gui.StructureViewer
jalview.gui.StructureViewer
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0.1386138613.9%
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jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
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0.1333333413.3%
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jalview.viewmodel.ViewportRanges
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0.1287128812.9%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.1285714412.9%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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0.1255715812.6%
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
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0.12408759412.4%
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jalview.util.Platform
jalview.util.Platform
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0.1226415112.3%
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
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0.1212%
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jalview.structure.StructureCommand
jalview.structure.StructureCommand
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0.1212%
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jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
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0.11538461611.5%
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jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
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jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
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0.1111111111.1%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
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0.1095890411%
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jalview.io.FileFormat
jalview.io.FileFormat
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0.1085271310.9%
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jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
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0.10679611610.7%
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
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0.1028806610.3%
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jalview.ext.jmol.JmolCommands
jalview.ext.jmol.JmolCommands
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0.1028037410.3%
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jalview.util.MapList
jalview.util.MapList
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0.1028037410.3%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
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0.10256410410.3%
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jalview.bin.argparser.Arg
jalview.bin.argparser.Arg
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0.099397599.9%
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com.stevesoft.pat.RegOpt
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jalview.analysis.CrossRef
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
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jalview.util.DBRefUtils
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mc_view.PDBfile
mc_view.PDBfile
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com.stevesoft.pat.RegRes
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