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jalview.structure.StructureImportSettings
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jalview.util.ShortcutKeyMaskExWrapper
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jalview.schemes.ColourSchemeProperty
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jalview.datamodel.Sequence
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org.json.simple.parser.Yytoken
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jalview.gui.SeqCanvas
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jalview.datamodel.AlignmentAnnotation
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jalview.schemes.RNAHelicesColour
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jalview.schemes.ColourSchemes
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jalview.gui.IdPanel
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jalview.schemes.PIDColourScheme
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jalview.ws.dbsources.Pdb
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jalview.analysis.CrossRef
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jalview.analysis.scoremodels.ScoreMatrix
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jalview.gui.ViewSelectionMenu
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jalview.ws.jws2.AAConClient
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jalview.datamodel.ColumnSelection.IntList
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jalview.util.ColorUtils
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jalview.analysis.GeneticCodes
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jalview.util.DBRefUtils
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jalview.ws.jws1.JPredClient
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jalview.gui.WsParamSetManager
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org.json.simple.JSONObject
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jalview.datamodel.HiddenColumns
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jalview.ws.jws1.SeqSearchWSClient
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jalview.ext.ensembl.EnsemblRestClient
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jalview.ws.jws1.MsaWSClient
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jalview.ws.dbsources.Uniprot
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jalview.gui.Preferences
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jalview.analysis.AlignmentUtils
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jalview.ext.ensembl.EnsemblGene
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jalview.controller.AlignViewController
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jalview.analysis.AlignSeq
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jalview.datamodel.features.SequenceFeatures
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jalview.gui.SeqPanel
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jalview.io.SequenceAnnotationReport
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jalview.ws.jws2.RNAalifoldClient
jalview.ws.jws2.RNAalifoldClient
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jalview.gui.SequenceFetcher
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jalview.datamodel.ColumnSelection
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jalview.gui.JvOptionPane
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org.json.simple.JSONArray
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jalview.gui.QuitHandler
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jalview.ext.ensembl.EnsemblSeqProxy
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