|
com.stevesoft.pat.patInf
com.stevesoft.pat.patInf
|
1.0100%
|
|
|
jalview.ws.WSClient
jalview.ws.WSClient
|
1.0100%
|
|
|
jalview.io.JalviewFileChooser.RecentlyOpened
jalview.io.JalviewFileChooser.RecentlyOpened
|
0.990%
|
|
|
jalview.gui.SplashScreen.SplashImage
jalview.gui.SplashScreen.SplashImage
|
0.8823529588.2%
|
|
|
jalview.io.JalviewFileChooser.recentlyOpenedCellRenderer
jalview.io.JalviewFileChooser.recentlyOpenedCellRenderer
|
0.869565287%
|
|
|
jalview.json.binding.biojs.BioJSReleasePojo
jalview.json.binding.biojs.BioJSReleasePojo
|
0.8461538684.6%
|
|
|
com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
|
0.8461538684.6%
|
|
|
mc_view.Residue
mc_view.Residue
|
0.8461538684.6%
|
|
|
jalview.gui.ItemsRenderer
jalview.gui.ItemsRenderer
|
0.777777877.8%
|
|
|
jalview.ws.jws2.jabaws2.Jws2InstanceFactory
jalview.ws.jws2.jabaws2.Jws2InstanceFactory
|
0.770%
|
|
|
jalview.io.JalviewFileFilter
jalview.io.JalviewFileFilter
|
0.694444469.4%
|
|
|
jalview.json.binding.biojs.BioJSRepositoryPojo
jalview.json.binding.biojs.BioJSRepositoryPojo
|
0.687568.8%
|
|
|
jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
|
0.678571467.9%
|
|
|
jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
|
0.541666754.2%
|
|
|
jalview.gui.SplashScreen
jalview.gui.SplashScreen
|
0.5389610553.9%
|
|
|
com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
|
0.523255852.3%
|
|
|
com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
|
0.550%
|
|
|
mc_view.Bond
mc_view.Bond
|
0.550%
|
|
|
com.stevesoft.pat.wrap.StringWrap
com.stevesoft.pat.wrap.StringWrap
|
0.550%
|
|
|
jalview.ext.jmol.JmolParser
jalview.ext.jmol.JmolParser
|
0.49649.6%
|
|
|
com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
|
0.485714348.6%
|
|
|
jalview.io.BioJsHTMLOutput
jalview.io.BioJsHTMLOutput
|
0.46446.4%
|
|
|
mc_view.PDBChain
mc_view.PDBChain
|
0.4505494545.1%
|
|
|
jalview.ws.utils.UrlDownloadClient
jalview.ws.utils.UrlDownloadClient
|
0.4285714342.9%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.4205128342.1%
|
|
|
jalview.io.StructureFile
jalview.io.StructureFile
|
0.440%
|
|
|
jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
|
0.440%
|
|
|
jalview.log.JalviewAppender
jalview.log.JalviewAppender
|
0.388888938.9%
|
|
|
org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
|
0.3853503238.5%
|
|
|
jalview.util.Format
jalview.util.Format
|
0.345755734.6%
|
|
|
jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
|
0.31531.5%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.3149606331.5%
|
|
|
jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.3141025631.4%
|
|
|
com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
|
0.3055555530.6%
|
|
|
org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
|
0.2945544429.5%
|
|
|
jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
|
0.285714328.6%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.285714328.6%
|
|
|
ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.285714328.6%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.285714328.6%
|
|
|
jalview.structure.StructureImportSettings
jalview.structure.StructureImportSettings
|
0.285714328.6%
|
|
|
mc_view.Atom
mc_view.Atom
|
0.282051328.2%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.2712527.1%
|
|
|
com.stevesoft.pat.Or
com.stevesoft.pat.Or
|
0.2692307826.9%
|
|
|
jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
|
0.2643678226.4%
|
|
|
com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
|
0.250909125.1%
|
|
|
jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
|
0.2435897424.4%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.2404844324%
|
|
|
jalview.util.HttpUtils
jalview.util.HttpUtils
|
0.2397660824%
|
|
|
jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
|
|
|
com.stevesoft.pat.Range
com.stevesoft.pat.Range
|
0.2272727322.7%
|
|
|
com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
|
0.22522.5%
|
|
|
jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
|
0.224806222.5%
|
|
|
jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
|
0.220543822.1%
|
|
|
jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
|
0.2127659621.3%
|
|
|
jalview.ws.rest.InputType
jalview.ws.rest.InputType
|
0.2056074720.6%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.20420.4%
|
|
|
jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.2014388420.1%
|
|
|
jalview.io.AlignFile
jalview.io.AlignFile
|
0.1986301419.9%
|
|
|
jalview.gui.BlogReader
jalview.gui.BlogReader
|
0.1933701619.3%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.191082819.1%
|
|
|
com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
|
0.17517.5%
|
|
|
jalview.io.JalviewFileChooser
jalview.io.JalviewFileChooser
|
0.1743869217.4%
|
|
|
jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
|
0.1730769317.3%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.1699164417%
|
|
|
jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
|
0.1616%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.1564625815.6%
|
|
|
jalview.log.JLogger
jalview.log.JLogger
|
0.1428571514.3%
|
|
|
jalview.bin.Console
jalview.bin.Console
|
0.1330049213.3%
|
|
|
jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
|
|
|
jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
|
0.11538461611.5%
|
|
|
jalview.ws.sifts.SiftsSettings
jalview.ws.sifts.SiftsSettings
|
0.1111111111.1%
|
|
|
jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
|
0.10679611610.7%
|
|
|
jalview.util.MapList
jalview.util.MapList
|
0.1028037410.3%
|
|
|
jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
|
|
|
com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
|
0.098639469.9%
|
|
|
jalview.util.StringUtils
jalview.util.StringUtils
|
0.098461549.8%
|
|
|
org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
|
0.096774199.7%
|
|
|
jalview.util.ChannelProperties
jalview.util.ChannelProperties
|
0.0965517249.7%
|
|
|
jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
|
0.09523819.5%
|
|
|
jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.09523819.5%
|
|
|
jalview.datamodel.PDBEntry
jalview.datamodel.PDBEntry
|
0.092511019.3%
|
|
|
jalview.util.JSONUtils
jalview.util.JSONUtils
|
0.090909099.1%
|
|
|
jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
|
0.086956528.7%
|
|
|
jalview.util.CaseInsensitiveString
jalview.util.CaseInsensitiveString
|
0.086956528.7%
|
|
|
jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.0833333368.3%
|
|
|
jalview.gui.Console
jalview.gui.Console
|
0.082568818.3%
|
|
|
jalview.io.FileFormats
jalview.io.FileFormats
|
0.088%
|
|
|
com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
|
0.0740740757.4%
|
|
|
jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
|
0.066666676.7%
|
|
|
com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
|
0.06474826.5%
|
|
|
jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
|
0.0616438356.2%
|
|
|
jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
|
0.0577777775.8%
|
|
|
jalview.datamodel.ContactMapHolder
jalview.datamodel.ContactMapHolder
|
0.0576923085.8%
|
|
|
jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.0576131685.8%
|
|
|
jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.0540540555.4%
|
|
|
jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.0514851475.1%
|
|
|
jalview.datamodel.annotations.AnnotationRowBuilder
jalview.datamodel.annotations.AnnotationRowBuilder
|
0.0512820525.1%
|
|
|
jalview.structure.StructureMapping
jalview.structure.StructureMapping
|
0.0466321264.7%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.044428524.4%
|
|
|
jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
|
0.043478264.3%
|
|
|
jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.042553194.3%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.0385674953.9%
|
|
|
org.json.simple.JSONObject
org.json.simple.JSONObject
|
0.037735853.8%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.033018873.3%
|
|
|
jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.0310077523.1%
|
|
|
com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
|
0.0289855082.9%
|
|
|
jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.0211480372.1%
|
|
|
jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
|
0.0156251.6%
|
|
|
jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.0155642021.6%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.0136674261.4%
|
|
|
jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
|
0.0089285720.9%
|
|
|
jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
|
0.0082644620.8%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
org.json.simple.JSONArray
org.json.simple.JSONArray
|
0.0080645160.8%
|
|
|
jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
|
0.0041322310.4%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.00361010830.4%
|
|
|
com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
|
0.00278551530.3%
|
|
|
jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
0.00105042020.1%
|
|
