|
com.stevesoft.pat.patInf
com.stevesoft.pat.patInf
|
1.0100%
|
|
|
jalview.io.DataSourceType
jalview.io.DataSourceType
|
1.0100%
|
|
|
jalview.renderer.ContactMapRenderer.Shading
jalview.renderer.ContactMapRenderer.Shading
|
1.0100%
|
|
|
jalview.renderer.ScaleRenderer.ScaleMark
jalview.renderer.ScaleRenderer.ScaleMark
|
1.0100%
|
|
|
jalview.ws.WSClient
jalview.ws.WSClient
|
1.0100%
|
|
|
jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
|
1.0100%
|
|
|
jalview.structure.StructureImportSettings.TFType
jalview.structure.StructureImportSettings.TFType
|
1.0100%
|
|
|
jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
|
0.9494%
|
|
|
jalview.util.UserAgent
jalview.util.UserAgent
|
0.885714388.6%
|
|
|
jalview.analysis.Conservation
jalview.analysis.Conservation
|
0.871921287.2%
|
|
|
jalview.util.imagemaker.BitmapImageSizing
jalview.util.imagemaker.BitmapImageSizing
|
0.8709677587.1%
|
|
|
jalview.util.QuickSort.IntComparator
jalview.util.QuickSort.IntComparator
|
0.8571428785.7%
|
|
|
jalview.gui.StructureViewer.ViewerType
jalview.gui.StructureViewer.ViewerType
|
0.8461538684.6%
|
|
|
com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
|
0.8461538684.6%
|
|
|
mc_view.Residue
mc_view.Residue
|
0.8461538684.6%
|
|
|
jalview.structure.AtomSpecModel
jalview.structure.AtomSpecModel
|
0.833333383.3%
|
|
|
jalview.datamodel.ContactListImpl
jalview.datamodel.ContactListImpl
|
0.796610279.7%
|
|
|
jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
|
0.7727272577.3%
|
|
|
jalview.structures.models.SequenceStructureBindingModel
jalview.structures.models.SequenceStructureBindingModel
|
0.7575%
|
|
|
jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
|
0.7575%
|
|
|
jalview.fts.core.FTSDataColumnPreferences
jalview.fts.core.FTSDataColumnPreferences
|
0.745762774.6%
|
|
|
jalview.datamodel.Profiles
jalview.datamodel.Profiles
|
0.7333333573.3%
|
|
|
jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
|
0.7272727572.7%
|
|
|
jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
|
0.7142857371.4%
|
|
|
jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
|
0.7142857371.4%
|
|
|
jalview.datamodel.ContactMapHolder
jalview.datamodel.ContactMapHolder
|
0.7115384371.2%
|
|
|
jalview.jbgui.GStructureViewer
jalview.jbgui.GStructureViewer
|
0.703296770.3%
|
|
|
jalview.renderer.ContactMapRenderer
jalview.renderer.ContactMapRenderer
|
0.693877669.4%
|
|
|
jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
|
0.678571467.9%
|
|
|
jalview.ws.sifts.SiftsSettings
jalview.ws.sifts.SiftsSettings
|
0.666666766.7%
|
|
|
jalview.workers.ConservationThread
jalview.workers.ConservationThread
|
0.655172465.5%
|
|
|
jalview.math.AlignmentDimension
jalview.math.AlignmentDimension
|
0.636363663.6%
|
|
|
jalview.renderer.AnnotationRendererFactory
jalview.renderer.AnnotationRendererFactory
|
0.62562.5%
|
|
|
jalview.util.MapUtils
jalview.util.MapUtils
|
0.608695660.9%
|
|
|
jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
|
0.595238159.5%
|
|
|
jalview.util.ParseHtmlBodyAndLinks
jalview.util.ParseHtmlBodyAndLinks
|
0.594202959.4%
|
|
|
jalview.jbgui.GAlignFrame
jalview.jbgui.GAlignFrame
|
0.581220758.1%
|
|
|
jalview.bin.ArgsParser
jalview.bin.ArgsParser
|
0.57557.5%
|
|
|
jalview.schemes.FeatureSettingsAdapter
jalview.schemes.FeatureSettingsAdapter
|
0.571428657.1%
|
|
|
jalview.util.CaseInsensitiveString
jalview.util.CaseInsensitiveString
|
0.565217456.5%
|
|
|
jalview.renderer.ScaleRenderer
jalview.renderer.ScaleRenderer
|
0.5656%
|
|
|
jalview.datamodel.ContactRange
jalview.datamodel.ContactRange
|
0.555555655.6%
|
|
|
jalview.workers.AlignCalcManager
jalview.workers.AlignCalcManager
|
0.541666754.2%
|
|
|
jalview.ext.jmol.JmolParser
jalview.ext.jmol.JmolParser
|
0.5333333653.3%
|
|
|
mc_view.PDBChain
mc_view.PDBChain
|
0.5329670353.3%
|
|
|
jalview.gui.AssociatePdbFileWithSeq
jalview.gui.AssociatePdbFileWithSeq
|
0.52552.5%
|
|
|
com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
|
0.523255852.3%
|
|
|
jalview.bin.argparser.ArgParser
jalview.bin.argparser.ArgParser
|
0.517293251.7%
|
|
|
jalview.ws.datamodel.alphafold.MappableContactMatrix
jalview.ws.datamodel.alphafold.MappableContactMatrix
|
0.5062761350.6%
|
|
|
jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
|
0.550%
|
|
|
jalview.urls.IdOrgSettings
jalview.urls.IdOrgSettings
|
0.550%
|
|
|
mc_view.Bond
mc_view.Bond
|
0.550%
|
|
|
jalview.datamodel.GroupSetHolder
jalview.datamodel.GroupSetHolder
|
0.550%
|
|
|
jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
|
0.550%
|
|
|
jalview.schemes.FlowerColourScheme
jalview.schemes.FlowerColourScheme
|
0.550%
|
|
|
jalview.schemes.NucleotideAmbiguityColourScheme
jalview.schemes.NucleotideAmbiguityColourScheme
|
0.550%
|
|
|
jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
|
0.550%
|
|
|
jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
|
0.550%
|
|
|
jalview.schemes.BlossomColourScheme
jalview.schemes.BlossomColourScheme
|
0.550%
|
|
|
jalview.schemes.SunsetColourScheme
jalview.schemes.SunsetColourScheme
|
0.550%
|
|
|
jalview.schemes.OceanColourScheme
jalview.schemes.OceanColourScheme
|
0.550%
|
|
|
jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
|
0.4761904847.6%
|
|
|
jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
|
0.475206647.5%
|
|
|
jalview.jbgui.GStructureChooser
jalview.jbgui.GStructureChooser
|
0.4727722747.3%
|
|
|
jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
|
0.466101746.6%
|
|
|
jalview.io.StructureFile
jalview.io.StructureFile
|
0.465116346.5%
|
|
|
jalview.io.AlignFile
jalview.io.AlignFile
|
0.4589041245.9%
|
|
|
jalview.bin.argparser.ArgValue
jalview.bin.argparser.ArgValue
|
0.447761244.8%
|
|
|
jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
|
0.4436363644.4%
|
|
|
jalview.bin.Commands
jalview.bin.Commands
|
0.4361567543.6%
|
|
|
jalview.bin.argparser.SubVals
jalview.bin.argparser.SubVals
|
0.432989743.3%
|
|
|
jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
0.4285714342.9%
|
|
|
jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.427884642.8%
|
|
|
jalview.gui.ImageExporter
jalview.gui.ImageExporter
|
0.4242424442.4%
|
|
|
jalview.datamodel.FloatContactMatrix
jalview.datamodel.FloatContactMatrix
|
0.4242%
|
|
|
jalview.util.ShortcutKeyMaskExWrapper11
jalview.util.ShortcutKeyMaskExWrapper11
|
0.4166666641.7%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.4153846241.5%
|
|
|
jalview.ext.so.SequenceOntology
jalview.ext.so.SequenceOntology
|
0.412541.2%
|
|
|
jalview.io.FileLoader
jalview.io.FileLoader
|
0.4113712341.1%
|
|
|
jalview.datamodel.Profile
jalview.datamodel.Profile
|
0.410714341.1%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.4094488340.9%
|
|
|
org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
|
0.4012738840.1%
|
|
|
jalview.io.FileFormats
jalview.io.FileFormats
|
0.440%
|
|
|
jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
|
0.440%
|
|
|
jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
|
0.440%
|
|
|
jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
|
0.440%
|
|
|
jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
|
0.440%
|
|
|
jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
|
0.440%
|
|
|
jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
|
0.440%
|
|
|
jalview.structure.StructureImportSettings
jalview.structure.StructureImportSettings
|
0.440%
|
|
|
jalview.log.JalviewAppender
jalview.log.JalviewAppender
|
0.388888938.9%
|
|
|
jalview.datamodel.PDBEntry
jalview.datamodel.PDBEntry
|
0.3832599238.3%
|
|
|
jalview.gui.AppJmolBinding
jalview.gui.AppJmolBinding
|
0.3831775838.3%
|
|
|
jalview.util.ImageMaker
jalview.util.ImageMaker
|
0.3798449638%
|
|
|
jalview.renderer.ContactGeometry
jalview.renderer.ContactGeometry
|
0.37537.5%
|
|
|
jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.3744292337.4%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.3737537.4%
|
|
|
jalview.bin.argparser.ArgValues
jalview.bin.argparser.ArgValues
|
0.3730158837.3%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.3691460236.9%
|
|
|
jalview.util.Format
jalview.util.Format
|
0.3685300436.9%
|
|
|
jalview.ws.datamodel.alphafold.PAEContactMatrix
jalview.ws.datamodel.alphafold.PAEContactMatrix
|
0.3628318636.3%
|
|
|
jalview.bin.argparser.ArgValuesMap
jalview.bin.argparser.ArgValuesMap
|
0.361858236.2%
|
|
|
jalview.io.FastaFile
jalview.io.FastaFile
|
0.3603603536%
|
|
|
jalview.renderer.ContactGeometry.contactInterval
jalview.renderer.ContactGeometry.contactInterval
|
0.3571428735.7%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.3571428735.7%
|
|
|
jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
|
0.3568904735.7%
|
|
|
jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
|
0.353305835.3%
|
|
|
jalview.jbgui.GStructureChooser.AssociateSeqPanel
jalview.jbgui.GStructureChooser.AssociateSeqPanel
|
0.352941235.3%
|
|
|
jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
|
0.348993334.9%
|
|
|
jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.3489208534.9%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.3428571534.3%
|
|
|
jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
|
0.3320312533.2%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.3253333332.5%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.3248407532.5%
|
|
|
jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.3215579732.2%
|
|
|
jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
|
0.31531.5%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.3148788831.5%
|
|
|
org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
|
0.3143564531.4%
|
|
|
com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
|
0.3142857331.4%
|
|
|
jalview.renderer.seqfeatures.FeatureColourFinder
jalview.renderer.seqfeatures.FeatureColourFinder
|
0.313725531.4%
|
|
|
jalview.gui.AppJmol
jalview.gui.AppJmol
|
0.3082706630.8%
|
|
|
jalview.structures.models.AAStructureBindingModel
jalview.structures.models.AAStructureBindingModel
|
0.2895662529%
|
|
|
jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
|
0.285714328.6%
|
|
|
jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
|
0.285714328.6%
|
|
|
jalview.datamodel.annotations.AnnotationRowBuilder
jalview.datamodel.annotations.AnnotationRowBuilder
|
0.282051328.2%
|
|
|
mc_view.Atom
mc_view.Atom
|
0.282051328.2%
|
|
|
jalview.gui.structurechooser.StructureChooserQuerySource
jalview.gui.structurechooser.StructureChooserQuerySource
|
0.2828%
|
|
|
jalview.io.IdentifyFile
jalview.io.IdentifyFile
|
0.279365127.9%
|
|
|
jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
|
0.2727272827.3%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.2674094726.7%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.2617602326.2%
|
|
|
jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
|
0.2608695626.1%
|
|
|
jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
|
0.2567975825.7%
|
|
|
jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
|
0.2525%
|
|
|
jalview.io.gff.SequenceOntologyFactory
jalview.io.gff.SequenceOntologyFactory
|
0.2525%
|
|
|
jalview.gui.StructureViewerBase
jalview.gui.StructureViewerBase
|
0.2492581624.9%
|
|
|
jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
|
0.2435897424.4%
|
|
|
jalview.util.ErrorLog
jalview.util.ErrorLog
|
0.2352941223.5%
|
|
|
jalview.bin.BuildDetails
jalview.bin.BuildDetails
|
0.2352941223.5%
|
|
|
jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
|
|
|
jalview.structure.StructureCommandsBase
jalview.structure.StructureCommandsBase
|
0.2317073223.2%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.2312925223.1%
|
|
|
com.stevesoft.pat.Range
com.stevesoft.pat.Range
|
0.2272727322.7%
|
|
|
com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
|
0.22522.5%
|
|
|
jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
|
0.224806222.5%
|
|
|
jalview.util.MapList
jalview.util.MapList
|
0.2242990622.4%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.2216014922.2%
|
|
|
jalview.viewmodel.seqfeatures.FeaturesDisplayed
jalview.viewmodel.seqfeatures.FeaturesDisplayed
|
0.2187521.9%
|
|
|
jalview.io.PDBFeatureSettings
jalview.io.PDBFeatureSettings
|
0.2142857221.4%
|
|
|
jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
|
0.2127659621.3%
|
|
|
jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.2118226621.2%
|
|
|
jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
|
0.2115384621.2%
|
|
|
jalview.util.HttpUtils
jalview.util.HttpUtils
|
0.2105263221.1%
|
|
|
com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
|
0.2072727220.7%
|
|
|
jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
|
0.2068965620.7%
|
|
|
jalview.ws.rest.InputType
jalview.ws.rest.InputType
|
0.2056074720.6%
|
|
|
jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
|
0.2050078220.5%
|
|
|
jalview.util.FileUtils
jalview.util.FileUtils
|
0.2043010720.4%
|
|
|
jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.1914062519.1%
|
|
|
jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.1898734119%
|
|
|
jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
|
0.187763718.8%
|
|
|
jalview.fts.core.FTSDataColumnPreferences.FTSDataColumnPrefsTableModel
jalview.fts.core.FTSDataColumnPreferences.FTSDataColumnPrefsTableModel
|
0.1857142918.6%
|
|
|
jalview.util.ColorUtils
jalview.util.ColorUtils
|
0.182795718.3%
|
|
|
jalview.util.ImageMaker.TYPE
jalview.util.ImageMaker.TYPE
|
0.1818181918.2%
|
|
|
com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
|
0.1805555518.1%
|
|
|
jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
|
0.1803278618%
|
|
|
jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.1789473717.9%
|
|
|
jalview.util.QuickSort
jalview.util.QuickSort
|
0.1779935217.8%
|
|
|
jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
|
0.176470617.6%
|
|
|
com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
|
0.17517.5%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.174528317.5%
|
|
|
jalview.bin.Console
jalview.bin.Console
|
0.172413817.2%
|
|
|
jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
|
0.1710526317.1%
|
|
|
jalview.jbgui.GStructureChooser.CustomComboSeparatorsRenderer
jalview.jbgui.GStructureChooser.CustomComboSeparatorsRenderer
|
0.1666666716.7%
|
|
|
jalview.log.JLogger
jalview.log.JLogger
|
0.1648351716.5%
|
|
|
jalview.ws.dbsources.EBIAlfaFold
jalview.ws.dbsources.EBIAlfaFold
|
0.1604477616%
|
|
|
jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
|
0.1616%
|
|
|
jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
|
0.1549295815.5%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.149819515%
|
|
|
jalview.fts.core.FTSRestClient
jalview.fts.core.FTSRestClient
|
0.1467181414.7%
|
|
|
jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
|
0.1428571514.3%
|
|
|
jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.1425742514.3%
|
|
|
jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
|
0.1419141914.2%
|
|
|
jalview.gui.StructureViewer
jalview.gui.StructureViewer
|
0.1386138613.9%
|
|
|
jalview.util.StringUtils
jalview.util.StringUtils
|
0.1353846213.5%
|
|
|
jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
|
0.1333333413.3%
|
|
|
jalview.datamodel.GroupSet
jalview.datamodel.GroupSet
|
0.1293103412.9%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.1271945512.7%
|
|
|
jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
|
|
|
jalview.io.FormatAdapter
jalview.io.FormatAdapter
|
0.1212%
|
|
|
jalview.structure.StructureCommand
jalview.structure.StructureCommand
|
0.1212%
|
|
|
jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
|
0.11538461611.5%
|
|
|
jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.11428571511.4%
|
|
|
jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
|
0.1111111111.1%
|
|
|
jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
|
0.1111111111.1%
|
|
|
jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
|
0.1095890411%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.1085271310.9%
|
|
|
jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
|
0.10679611610.7%
|
|
|
jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.10389610410.4%
|
|
|
jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.1028806610.3%
|
|
|
jalview.ext.jmol.JmolCommands
jalview.ext.jmol.JmolCommands
|
0.1028037410.3%
|
|
|
jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
|
|
|
jalview.bin.argparser.Arg
jalview.bin.argparser.Arg
|
0.099397599.9%
|
|
|
com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
|
0.098639469.9%
|
|
|
jalview.datamodel.ContactMatrixI
jalview.datamodel.ContactMatrixI
|
0.0970873769.7%
|
|
|
org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
|
0.096774199.7%
|
|
|
jalview.gui.StructureChooser
jalview.gui.StructureChooser
|
0.0955120859.6%
|
|
|
jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
|
0.09523819.5%
|
|
|
jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient
jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient
|
0.093759.4%
|
|
|
com.stevesoft.pat.Or
com.stevesoft.pat.Or
|
0.089743599%
|
|
|
jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
|
0.086956528.7%
|
|
|
jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.085106388.5%
|
|
|
jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
|
0.0843373468.4%
|
|
|
jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.0833333368.3%
|
|
|
jalview.structure.StructureMapping
jalview.structure.StructureMapping
|
0.082901558.3%
|
|
|
jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.081081088.1%
|
|
|
jalview.schemes.FeatureColour
jalview.schemes.FeatureColour
|
0.077894747.8%
|
|
|
jalview.util.ChannelProperties
jalview.util.ChannelProperties
|
0.075862077.6%
|
|
|
com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
|
0.0757.5%
|
|
|
jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.074766357.5%
|
|
|
com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
|
0.0740740757.4%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.0717539867.2%
|
|
|
jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
|
0.070175447%
|
|
|
jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.067264576.7%
|
|
|
jalview.util.LaunchUtils
jalview.util.LaunchUtils
|
0.0661764746.6%
|
|
|
jalview.fts.service.pdb.PDBFTSRestClient
jalview.fts.service.pdb.PDBFTSRestClient
|
0.065502186.6%
|
|
|
com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
|
0.06474826.5%
|
|
|
jalview.analysis.CrossRef
jalview.analysis.CrossRef
|
0.063524596.4%
|
|
|
jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.0630252146.3%
|
|
|
jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
|
0.0616438356.2%
|
|
|
ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
|
|
|
jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
|
0.059405945.9%
|
|
|
jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
|
0.0577777775.8%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.0542452825.4%
|
|
|
jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0512820525.1%
|
|
|
jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
|
0.0496894425%
|
|
|
jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
|
0.047619054.8%
|
|
|
jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.0460921864.6%
|
|
|
jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.045317224.5%
|
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.044673544.5%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0431286544.3%
|
|
|
jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
|
0.0416666684.2%
|
|
|
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
|
0.0390879473.9%
|
|
|
org.json.simple.JSONObject
org.json.simple.JSONObject
|
0.037735853.8%
|
|
|
jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.027397262.7%
|
|
|
jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0254237282.5%
|
|
|
jalview.util.MappingUtils
jalview.util.MappingUtils
|
0.0237068962.4%
|
|
|
jalview.gui.Console
jalview.gui.Console
|
0.0206422022.1%
|
|
|
jalview.gui.structurechooser.PDBStructureChooserQuerySource
jalview.gui.structurechooser.PDBStructureChooserQuerySource
|
0.017751481.8%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.0155642021.6%
|
|
|
mc_view.PDBfile
mc_view.PDBfile
|
0.0150375941.5%
|
|
|
jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0136518771.4%
|
|
|
jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0125412541.3%
|
|
|
jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.0122699381.2%
|
|
|
jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
|
0.0089285720.9%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
org.json.simple.JSONArray
org.json.simple.JSONArray
|
0.0080645160.8%
|
|
|
jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.007547170.8%
|
|
|
com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
|
0.0072463770.7%
|
|
|
jalview.gui.QuitHandler
jalview.gui.QuitHandler
|
0.00722021660.7%
|
|
|
com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
|
0.00278551530.3%
|
|
|
jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
0.00105042020.1%
|
|
