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Coverage Report

Class AlignmentUtilsTests

 
AlignmentUtilsTests 4545 00 00 0.034
1.0100%
 
AlignmentUtilsTests.testMapProteinAlignmentToCdna_withStartAndStopCodonsAlignmentUtilsTests.testMapProteinAlignmentToCdna_withStartAndStopCodons 173133813500111 Nov 15:15:35 1PASS 0.0010.001  
AlignmentUtilsTests.testGetSequencesByNameAlignmentUtilsTests.testGetSequencesByName 173133813498711 Nov 15:15:34 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_withIntronsAlignmentUtilsTests.testAlignSequenceAs_withMapping_withIntrons 173133813497311 Nov 15:15:34 1PASS 0.00  
AlignmentUtilsTests.testAlignAsSameSequencesAlignmentUtilsTests.testAlignAsSameSequences 173133813496011 Nov 15:15:34 1PASS 0.0040.004  
AlignmentUtilsTests.testIsMappableAlignmentUtilsTests.testIsMappable 173133813498911 Nov 15:15:34 1PASS 0.00  
AlignmentUtilsTests.testMakeCdsAlignment_filterProductsAlignmentUtilsTests.testMakeCdsAlignment_filterProducts 173133813499411 Nov 15:15:34 1PASS 0.00  
AlignmentUtilsTests.testFindCdsPositionsAlignmentUtilsTests.testFindCdsPositions 173133813498511 Nov 15:15:34 1PASS 0.0010.001  
AlignmentUtilsTests.testAddReferenceAnnotationsAlignmentUtilsTests.testAddReferenceAnnotations 173133813495511 Nov 15:15:34 1PASS 0.0020.002  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 173133813500411 Nov 15:15:35 1PASS 0.00  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 173133813500511 Nov 15:15:35 1PASS 0.00  
AlignmentUtilsTests.testShowOrHideSequenceAnnotationsAlignmentUtilsTests.testShowOrHideSequenceAnnotations 173133813500611 Nov 15:15:35 1PASS 0.0010.001  
AlignmentUtilsTests.testFindCdsForProtein_noUTRAlignmentUtilsTests.testFindCdsForProtein_noUTR 173133813498411 Nov 15:15:34 1PASS 0.0010.001  
AlignmentUtilsTests.testExpandContextAlignmentUtilsTests.testExpandContext 173133813497511 Nov 15:15:34 1PASS 0.0070.007  
AlignmentUtilsTests.testTranslatesAsAlignmentUtilsTests.testTranslatesAs 173133813501111 Nov 15:15:35 1PASS 0.0010.001  
AlignmentUtilsTests.testFindCdsPositions_fivePrimeIncompleteAlignmentUtilsTests.testFindCdsPositions_fivePrimeIncomplete 173133813498611 Nov 15:15:34 1PASS 0.00  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 173133813500611 Nov 15:15:35 1PASS 0.00  
AlignmentUtilsTests.testFindCdsForProteinAlignmentUtilsTests.testFindCdsForProtein 173133813498411 Nov 15:15:34 1PASS 0.00  
AlignmentUtilsTests.testAlignAsSameSequencesMultipleSubSeqAlignmentUtilsTests.testAlignAsSameSequencesMultipleSubSeq 173133813496511 Nov 15:15:34 1PASS 0.00  
AlignmentUtilsTests.testMakeCdsAlignment_multipleProteinsAlignmentUtilsTests.testMakeCdsAlignment_multipleProteins 173133813499511 Nov 15:15:34 1PASS 0.0010.001  
AlignmentUtilsTests.testTransferFeatures_withOmitAlignmentUtilsTests.testTransferFeatures_withOmit 173133813500811 Nov 15:15:35 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_withTrailingPeptideAlignmentUtilsTests.testAlignSequenceAs_withTrailingPeptide 173133813497411 Nov 15:15:34 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_noIntronsAlignmentUtilsTests.testAlignSequenceAs_withMapping_noIntrons 173133813497211 Nov 15:15:34 1PASS 0.00  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 173133813500311 Nov 15:15:35 1PASS 0.0010.001  
AlignmentUtilsTests.testTransferFeatures_withSelectAlignmentUtilsTests.testTransferFeatures_withSelect 173133813500911 Nov 15:15:35 1PASS 0.00  
AlignmentUtilsTests.testAlignProteinAsDnaAlignmentUtilsTests.testAlignProteinAsDna 173133813496711 Nov 15:15:34 1PASS 0.0020.002  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_withXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_withXrefs 173133813500211 Nov 15:15:35 1PASS 0.0010.001  
AlignmentUtilsTests.testTransferFeaturesAlignmentUtilsTests.testTransferFeatures 173133813500711 Nov 15:15:35 1PASS 0.00  
AlignmentUtilsTests.testExpandContext_annotationAlignmentUtilsTests.testExpandContext_annotation 173133813498211 Nov 15:15:34 1PASS 0.0010.001  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_noXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_noXrefs 173133813499911 Nov 15:15:34 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_mappedProteinProteinAlignmentUtilsTests.testAlignSequenceAs_mappedProteinProtein 173133813497111 Nov 15:15:34 1PASS 0.00  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_prioritiseXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_prioritiseXrefs 173133813500011 Nov 15:15:35 1PASS 0.00  
AlignmentUtilsTests.testMakeCdsAlignmentAlignmentUtilsTests.testMakeCdsAlignment 173133813499011 Nov 15:15:34 1PASS 0.0020.002  
AlignmentUtilsTests.testAlignProteinAsDna_incompleteStartCodonAlignmentUtilsTests.testAlignProteinAsDna_incompleteStartCodon 173133813496911 Nov 15:15:34 1PASS 0.0010.001  
AlignmentUtilsTests.testMapCdsToProteinAlignmentUtilsTests.testMapCdsToProtein 173133813499711 Nov 15:15:34 1PASS 0.0010.001  
AlignmentUtilsTests.testHasCrossRefAlignmentUtilsTests.testHasCrossRef 173133813498811 Nov 15:15:34 1PASS 0.00  
AlignmentUtilsTests.testHaveCrossRefAlignmentUtilsTests.testHaveCrossRef 173133813498911 Nov 15:15:34 1PASS 0.00  
AlignmentUtilsTests.testAddMappedPositionsAlignmentUtilsTests.testAddMappedPositions 173133813495411 Nov 15:15:34 1PASS 0.00  
AlignmentUtilsTests.testMakeCdsAlignment_alternativeTranscriptsAlignmentUtilsTests.testMakeCdsAlignment_alternativeTranscripts 173133813499211 Nov 15:15:34 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignAs_alternateTranscriptsUngappedAlignmentUtilsTests.testAlignAs_alternateTranscriptsUngapped 173133813496611 Nov 15:15:34 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_withUnmappedProteinAlignmentUtilsTests.testAlignSequenceAs_withMapping_withUnmappedProtein 173133813497411 Nov 15:15:34 1PASS 0.00  
AlignmentUtilsTests.testAddReferenceContactMapAlignmentUtilsTests.testAddReferenceContactMap 173133813495811 Nov 15:15:34 1PASS 0.0020.002  
AlignmentUtilsTests.testMapCdnaToProtein_forSubsequenceAlignmentUtilsTests.testMapCdnaToProtein_forSubsequence 173133813499611 Nov 15:15:34 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_keepIntronGapsOnlyAlignmentUtilsTests.testAlignSequenceAs_keepIntronGapsOnly 173133813497011 Nov 15:15:34 1PASS 0.0010.001  
AlignmentUtilsTests.testTransferGeneLociAlignmentUtilsTests.testTransferGeneLoci 173133813501011 Nov 15:15:35 1PASS 0.0010.001  
AlignmentUtilsTests.testAddMappedPositions_withStopCodonAlignmentUtilsTests.testAddMappedPositions_withStopCodon 173133813495511 Nov 15:15:34 1PASS 0.00