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Coverage Report

  1. Project Clover database Mon Nov 11 2024 15:05:32 GMT
  2. Package jalview.ws.dbsources

File EmblSource.java

 

Coverage histogram

../../../img/srcFileCovDistChart6.png
37% of files have more coverage

Code metrics

0
5
5
1
74
30
5
1
1
5
1

Classes

Class Line # Actions
EmblSource 30 5 5
0.660%
 

Contributing tests

This file is covered by 203 tests. .

Source view

1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.ws.dbsources;
22   
23    import jalview.datamodel.AlignmentI;
24    import jalview.datamodel.DBRefSource;
25   
26    /**
27    * @author JimP
28    *
29    */
 
30    public class EmblSource extends EmblFlatfileSource // was EmblXmlSource
31    {
32   
 
33  16 toggle public EmblSource()
34    {
35  16 super();
36    }
37   
38    /*
39    * (non-Javadoc)
40    *
41    * @see jalview.ws.DbSourceProxy#getDbSource()
42    */
 
43  2892 toggle @Override
44    public String getDbSource()
45    {
46  2892 return DBRefSource.EMBL;
47    }
48   
49    /*
50    * (non-Javadoc)
51    *
52    * @see jalview.ws.DbSourceProxy#getSequenceRecords(java.lang.String[])
53    */
 
54  0 toggle @Override
55    public AlignmentI getSequenceRecords(String queries) throws Exception
56    {
57  0 return getEmblSequenceRecords(DBRefSource.EMBL, queries);
58    }
59   
60    /**
61    * return LHD_CHICK coding gene
62    */
 
63  0 toggle @Override
64    public String getTestQuery()
65    {
66  0 return "X53828";
67    }
68   
 
69  2876 toggle @Override
70    public String getDbName()
71    {
72  2876 return "EMBL"; // getDbSource();
73    }
74    }
  • Report generated by OpenClover v 4.4.1 on Mon Nov 11 2024 15:12:36 GMT using coverage data from Mon Nov 11 2024 15:12:26 GMT.
  • OpenClover is free and open-source software.